RNA id: XM_036962821.1


Basic Information

Item Value
RNA id XM_036962821.1
length 1410
RNA type mRNA
GC content 0.45
exon number 8
gene id LOC110505745
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29113615 ~ 29122177 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTgcttgtggtaactagtgacgaccgaaCCACTGTAGGAGGAGCTTCCGGTTTGTCGGTTGATGTAGCAGAAATTAAATCGTTGTTTGGAAACATCATGTACCAAGTATTCATCTAAATCTTATGGATATTGAATAATAATATGGCCGTAGCCATGAGTTCAACCTGTCCGGGACATTATTGTGGCAAGATGTTGATAAATGGCTCATTTGATGGAGAATGTGGGTTGAATTATCAGGTATGTCCCAGAGGAGAGAAGACAAACATGCAGAAGATCTGTGAGAAGTGTACAGAATCCCCTGAACTTTATGACTGGCTGTACCTGGGCTTCATGGCAATGCTGCCACTGGTTCTACACTGGTTCTTCATCGAGTGGTACTCTGGGAAGAAAAGCTCCAGTGCCCTCTTCCAACACATCACAGCCCTGTTTGAGTGCAGCGCTGCGGCTATGGTGACTCTGCTGGTCAACGACCCAGTGGGTCTGCTGTCTATCAGGTCCTGCAGAGTCCAGATGCTTTCAGACTGGTACACCATGCTGTACAACCCCAGCCCAGACTACATCACCACTCTACACTGCACACAGGAAGCTGTCTTTCCCCTGTACACTATAGTGTTGATCTACTACGCCTTCTGCCTGATGTTTATGATGCTGCTGCGGCCACTCCTGGTCAAGAAGATTGCCTGTGGTCTGGGGAAATCTGACCGCTTCAAGAGCATCTACGCTGCTCTCTACTTCTTCCCCATCCTGACAGTCCTGCAAGCTGTGGGAGGCGGCCTGCTCTATTATGCTTTTCCATACATTATTTTGGTGTTGTCCCTGGTTACCCTGGCAGTGTACATGTCAGCCTCAGAAATACAGTCTTTCAAGAATCTCGCTGCCAAGAAGAAGAGGTTGGTGGTGCTCTTCAGCCATTGGCTACTTCACGCGTATGGCATCATCTCCATCTCCCGATTGGATAAACTGGAGCAGGACCTACCTCTATTGGCCCTGGTACCTGGACCCGCCCTTTTCTACCTGCTCACTGCCAGGTTCACTGAACCTAGCCGGATTCTGTCAGAAGGCGGCAACGGCCACTAGAACTATTATAGATGGATGTGGGTATCAAAAATGGAATGAAAATTATCCTGCTGTTTCCCCGTAAATTATGTTGGGGAAATACGCTTGCTGGATAGTAAGGAAATTAAATTGTGAATGTATTTTATGCATGCTCATAGAATGCTTGTAAATAGATGACAATGGATGTGTTTattagaaatatatatttttattgcaGTGTAAAACATACAGAACGAGGACTTGACTAGCTACAACTTTGACTTGTAAAATGTATTGTTCAAAAAAACTTGTGAAATGCAGTGTTATAAAGTATGATTTTTCTGAAATAAAATCAGAAGTGTGTACTCATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2253072 lncRNA downstream 66456 29046930 ~ 29047159 (-) True G1970839
TU2253057 lncRNA downstream 76584 29036702 ~ 29037031 (-) True G1970824
TU2253037 lncRNA downstream 94488 29018809 ~ 29019127 (-) True G1970804
TU2253031 lncRNA downstream 104707 29008699 ~ 29008908 (-) True G1970798
TU2253010 lncRNA downstream 117891 28995392 ~ 28995724 (-) True G1970777
TU2253290 lncRNA upstream 85813 29207990 ~ 29209025 (-) True G1971025
TU2253293 lncRNA upstream 87937 29210114 ~ 29210446 (-) True G1971028
TU2253303 lncRNA upstream 91363 29213540 ~ 29213753 (-) True G1971038
TU2253467 lncRNA upstream 94280 29216457 ~ 29217167 (-) True G1971183
TU2253535 lncRNA upstream 156211 29278388 ~ 29278611 (-) True G1971213
XM_021585144.2 mRNA downstream 1019380 28066100 ~ 28094235 (-) True ctage5
XM_036963130.1 mRNA downstream 1019381 28066100 ~ 28094234 (-) False ctage5
XM_036963131.1 mRNA downstream 1019381 28066100 ~ 28094234 (-) False ctage5
XM_036963132.1 mRNA downstream 1019381 28066100 ~ 28094234 (-) False ctage5
XM_036963134.1 mRNA downstream 1019382 28066100 ~ 28094233 (-) False ctage5
XM_036962824.1 mRNA upstream 13184 29135361 ~ 29169633 (-) False daam1a
XM_036962822.1 mRNA upstream 13184 29135361 ~ 29191453 (-) False daam1a
XM_036962823.1 mRNA upstream 13184 29135361 ~ 29206222 (-) True daam1a
LOC110504220 mRNA upstream 95204 29217381 ~ 29221732 (-) True LOC110504220
XM_021585169.2 mRNA upstream 98546 29220723 ~ 29238348 (-) False LOC110505749
TU2252826 other downstream 251628 28857940 ~ 28861987 (-) True G1970606
TU2251917 other downstream 969853 28143438 ~ 28143762 (-) True G1969724
TU2251892 other downstream 1012179 28099921 ~ 28101436 (-) True G1969699
TU2250152 other downstream 2348244 26716684 ~ 26765371 (-) True LOC110505716
TU2249876 other downstream 2574907 26535364 ~ 26538708 (-) True G1967882
TU2253707 other upstream 400583 29522760 ~ 29525046 (-) True G1971357
TU2254903 other upstream 860107 29982284 ~ 29982900 (-) True G1972454
TU2255230 other upstream 1385374 30507551 ~ 30508058 (-) True G1972746
TU2255304 other upstream 1494411 30616588 ~ 30675515 (-) False G1972810
TU2255302 other upstream 1503912 30626089 ~ 30683403 (-) False G1972810

Expression Profile