RNA id: XM_021585160.2


Basic Information

Item Value
RNA id XM_021585160.2
length 3883
RNA type mRNA
GC content 0.44
exon number 1
gene id LOC110505748
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29129043 ~ 29136833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAAATTGTACGCAAGGAAGGCGCGTACTCGGCAATATGAGATTCAGGAATACGGGGATTGAGGCGACCAGGCGAGAACTGCAAACAGTGGCATGGACCCCAGTTTGAATAATGAGGAACATTTTGAGGAACCCATAGAAAGGGGGTTGCAAAGGGGATCTACATGTCTTTAATACGAAATATCTAAGCTGCTGCatcaacacagagacaacatATTCGTAGAGGGATGAATCTCCTTCCATTCTGTGGAGGCCCCCCATTTGTGTCCGATGGATTTCCCCGTGAACATTGCATTGCTTGGCACCAGCAACTCCACCGCTCCAGACAACACCTCTGGCACGGGTTTAACGCTAGAAATAGTCACCATAGCACCGGTGTTACACAGCTTTTTTACGAAGGCCAGTCATGGAAACCTTACGGGCGGAGGCGACGAAAACCAACAACACATACCCGTGCAGAGCGCGGAGGGAAACTCTGTCCTCCAGGGCATCACGGTGGCAGCTCAAGCCTTGTTGCTCCTGGTTATCTTCCTCCTCTCTAGTTTAGGGAATTCTGCGGTGGTGATTGTCATAATAAAACATCGACAGCTGAGAACCGTTACCAATGCTTTCATCATGTCCCTTTCACTGTCTGATTTCTTGACGGCCGTTCTTTGTTTACCGTTCTCGTTCATGATGCTCTTCAGCAAAGATGGTGTGTGGATGTTTGGAGACCGTTTCTGCGTCGCCAACGGGTTCTTCAACGCATGCTTTGGTATTATTTCCACACTGACAATGACTCTAATTTCCTTTGACCGGTATTATGCCATCGTGAGGCAACCTCAGGAGAAGATAGGCAGGAGGAAGGCCATAACACTGTTGGTGGCAGTGTGGTTAACAGCAGTGTTTTTCTCCATTCCATGGTACCTGGTGATGCGAACGTCCAAGGATCTAGTCGTCCATAAAAGGGGCTTCTACCACTGTATGTATGTCTTTCACACTGGTACTTCTAGGGTGGGTACCTCTTACAGTATAGCTTTAATAGTGGTGTGTTATCTCCTTCCGTTTGCGCTCATGTGTTTCTGTCATTATAACATATGTAAGACCGTTAGGTTATCAGAAATAAGGGTGCGGCCGGTGACCACTTACGCGTATTTACTCCGGTTTTATAGTGAGATGAGGACGGCCACGACAGTGCTGATTATGATAGTGTGTATCATCTTCTGCTGGGGCCCCTACTGTCTGATGGGTATCATCACCGCCGTGGGAGATTACTCATTCAACCCTGTCATGGACACCGTGGCAATGTGGATGGCATGGGCAAACGGTGCCATAAACCCGCTCATTTACGCAATTAGAAACCCAAACATATCGATGCTTTTAGGCCGAAGCCGAGAAGAGGGATATAGGACTAGAAACATTTCTGCCTACCTATCTACACAAACCCAAAGCAGGGATGTAAGAACCAGAGCCGACCAAATCAGAGACCGGTACGGTGCAAACAACCGGCTGTCTTCCTCCAGCCCAGCGAACGGAGGAGAGGTTGCGATGTGGGCTTGTAAAAACCCCGCGGTGTTCTTCTGTAGGGATGCTCATCCCGATACTCTGTCCGAACCCACGGTGCCAAAAGTTGAAACTGCAGATACAAGTCTGTGATCGTCCTTTTATTTTCGAGAAACTTGATGAATGTCAAAATGTTGAAGTAATTTAAATATGCCAAAGTTTTGAACAAATGGAGAAATCAGAGGAAAAGTAGACCTAACTGTTAATTAGTGATAAGGGATATAAAAGTCAGTCCTATGAATTGACAACCCGCGTTTGAACACTTTACGCAGTGCCAGACGCTATACACACTGATGGAACAGAGTGCACATTTAAAAGCTCAATTTATTTTCAGGCCAATAAAGCAGTGTGATTTATAAAATACTCCAAATGATTAAACATCTCATTTGATTATATGTATTACTTTATGCCTTATCGGATACATGTTTATTGCGCAACCTTTACCACTGGGCGCAGACGTCAGTTCAacttctagttttgatttacatttggttgcgTTGTCAAGTAATGTGAATTCAACAAGAGCCAGTCTTTCGATTCCACTTTGATTTGAGGCATAGTTTATTGCTATAGTATTAAACTGTCAAAAGTGGCACCCCAAACCACTAAATCCCATTGAACTAACCCAAAGGAAAAACTGGATAATGGCGATAGCTGTTTAATTTAGGCTGATTTCCTTTTTGATTTGGGATAGTGCATTTGTGCTCATTTATACTGTATTCAGGGTAGAGGTTTAATATGAAATACTGTGAAGAATTCAGTCATTTAAATAAAGTGTGCGCGCGCTATGATTTGATATTCAAGATGTCATGTATGGCTGGCCATAGCGATTTGCTAGAACACGAAACAATGCTATGAAAACACAATTTAAATGTGCCTGTATTAAAAAAGGTGTATTTTGAATACCATACTCATTAGTTTGTCTATTTAAAATGTCATAATTGTATTGCTTGCCATAAGAAGCTGCGAGTTGTCAGAATGTGATTTTATTGGTGAGTTGTTAAATCATATTTTAacttaaaatgtataaataaatgttttgaagCATCATATATTTATGTATTGTTCCTTATATGTGACACTGCCAATACAGATCCTGACCTAGGACAGGAGTGGTGAAACAGCAGCTAGATGAATTGTTACCAGAGGTTTTATTAGTGACAAAGTCATTATTCACAATGCTTTCTGAATAGTATCCAAAGTATTGCAATTCATAGAAGCAGATGTTTCCTCAGAATGTCTTTAAAACATTTCAGAAATCCTTCACTTTCAGACAAGACCAACAGTAAATGGAACCTGTAGAATAGAGACATGGGCGCATTGGCCACTCCTTACTATAACTCAGATGAATACCTGTCTTTGTTGCACAGTTTGGAAAACAGGGTTAAATTACtttttagtcattcagcagatactcttatccagagtgacatacagttagtgcattcatcttaaaatagctaggtgagacaatcatatcaagtacattttccctGCAAAGTATTTATCAGTGCTAGTGGGGAAAAAGAAAGGGGGAGGGTTGTGAGCATGTTAAGATACTTTTCAAAGAGGTagtgtttcagatgttttcgAAAGATGGGCAGAGACTCCGCTGTCCTGACTTTAGGGGGAAGCTTGTTCcgccattggggtgccaggacaaagAGCTtaaggggtgggagggccaagagaccagaggtggcggaACGGAGGGCTTGGGTTGGAATGttgggtttgagcatagcctgaagtgGGGCATTTCCCCTTGCTGCTCCGAAGGGAAAAAACAGAGTCTTGAAGGTTATGCAAGCTTCAAATGGAAGCCAGTGGCGTGTGCAGAGGAATGGGGTGACATGAGAAAACTAGTGAAGGTTGAACACCATGCGGGTTGCAGCCTTCTGTAAAGtttcaggggtttgatggcacaaatGGTGAGCACAGCCAACAGAGTTGCAGTGGTCTAGATtagagatgacaagtgcctggattatgacctgcgccgcttcctgtgtgagtgAAGGTCGTACTCTAGGGATGATGTAGAGCATGAACCTCCATCACTGccttgatgtttgcagagaatgacagggtgtttTCCAGGGTCACACCAATGTTCTTTGCAATCTGGGAAAGGGACatcgtggagttgtcaaccgtgatggagaagTCTTGGAGTGGGCAGGCCTTCCCTGGGAAGAATAGCAGCTCTGTtatgtcgaggttgagcttgaggtggtgagTAGACATACAAGCTGAGATGTCTGCAAGGTACAGAGAAATGcatgtcgccacctgggtgtcagaagggggaagAGTAGCTGAGTGCCACCCGCAAAGAAacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2253117 lncRNA upstream 14078 29113625 ~ 29114965 (+) True ccdc175
TU2253076 lncRNA upstream 78368 29050463 ~ 29050675 (+) True G1970843
TU2253050 lncRNA upstream 97205 29031426 ~ 29031838 (+) True G1970817
TU2253026 lncRNA upstream 122429 29006365 ~ 29006614 (+) True G1970793
TU2253022 lncRNA upstream 124292 29004390 ~ 29004751 (+) True G1970789
TU2253147 lncRNA downstream 10942 29143867 ~ 29144796 (+) False G1970898
TU2253148 lncRNA downstream 10942 29143867 ~ 29144796 (+) True G1970898
TU2253175 lncRNA downstream 43479 29176404 ~ 29176711 (+) True G1970921
TU2253300 lncRNA downstream 79785 29212710 ~ 29212925 (+) True G1971035
TU2253308 lncRNA downstream 83890 29216815 ~ 29217121 (+) True G1971043
XM_036962819.1 mRNA upstream 15379 29106207 ~ 29113664 (+) False ccdc175
XM_021585157.2 mRNA upstream 15379 29106211 ~ 29113664 (+) False ccdc175
XM_021583111.2 mRNA upstream 23001 29101062 ~ 29106042 (+) True LOC110504335
XM_021585156.2 mRNA upstream 527180 28548548 ~ 28601863 (+) False LOC110505743
XM_021585154.2 mRNA upstream 1022667 28099654 ~ 28106376 (+) True pnn
XM_021585171.2 mRNA downstream 139077 29272002 ~ 29274608 (+) True gjb9a
XM_021585176.2 mRNA downstream 188409 29321334 ~ 29326173 (+) True adprs
XM_021585184.2 mRNA downstream 193349 29326274 ~ 29334901 (+) False LOC110505757
XM_021585182.2 mRNA downstream 193351 29326276 ~ 29334898 (+) False LOC110505757
XM_021585183.2 mRNA downstream 193373 29326298 ~ 29334901 (+) False LOC110505757
TU2252207 other upstream 715124 28413600 ~ 28413919 (+) True G1970001
TU2250361 other upstream 2040727 27081262 ~ 27088316 (+) True LOC110505721
TU2250362 other upstream 2051903 27072415 ~ 27077140 (+) False LOC110505721
TU2250364 other upstream 2072376 26988839 ~ 27056667 (+) False LOC110505721
TU2249960 other upstream 2473707 26654905 ~ 26655336 (+) True G1967965
TU2253384 other downstream 341195 29474120 ~ 29478383 (+) True G1971104
TU2254300 other downstream 1190588 30323513 ~ 30330437 (+) True LOC110505775
TU2254659 other downstream 1497403 30630328 ~ 30632667 (+) True G1972242
TU2254661 other downstream 1504129 30637054 ~ 30655039 (+) True G1972244
TU2254663 other downstream 1526479 30659404 ~ 30679995 (+) True G1972245

Expression Profile