RNA id: XM_021585167.2


Basic Information

Item Value
RNA id XM_021585167.2
length 5323
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110505749
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29220723 ~ 29266875 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAGTGTAATCAGTGTGCCTATTCCTGAGATCACAGCAATTTTAGAATATGATGCATGAAAGCTTGTGAATGATACAAGGTTTCCCCTAAATCCCTGTGCGCATCCGGAGGGTCCCGAATTCTGTCTGCCTGACAGCTGTGGCGCAGGGACTTTATGGCAGCAGGAGCTtggaagagggaggggggtgtaCTCGACCTGCAGTCTGGCTCCAGCAGCGGAGATAGGGAGTAGTGGAAAGAACTGCTGGCACGTCAAAATTGGAACAAAACCCTCACAGGGGTGAAAAATGTATGCTGTCACAAAGTCTCGTCAGCGACGAAGAATGGGCGCTTTTGATCGGCTACATGTTTTAGATGTTCTTAGCCTACGTACATTGTTTTATATTGAGATAGGGGTATTTGTTGTAGAAACATTATCTTTATCAGAGAAAGACAAATACGATCCGTTATCGGACAGGCCTAAATAGATGTGACAACTATCCGGTTGATTCTCGCCCCCTCTGTTTACTGATTTGTAGATCGGCGTGCGAACTCTTGTAGCGGGGACAGCAGGGGACTAACCAACCGCGCTCCTCGAGCCAGAGGAAGAGACTCGTAAATCAACGCATCGGACAAGTGCGAAAGTTCTGATAGGAATCAGTGCACTGTCATTCAGTGGCGCCGTAATCGGCTACATTTTCTGGATTAGCAGAGGAAATATTTGCTAGAAAAAATGGAGTGGAAACATGTTGAGGCTGTACAGGAATTTACAGTTGAAGGACAATGCAGCAAAATTAAGGTGCGATCTTGCAGAATTACATGGGACGCCCACCAGgtggggaACCCTTGCGTGGAGCTGACTCTGTCGGAGCTGCAGGAGATGGCCACACGGCAACAGCAACAGATCGAGACCCAACAGCAGATGCTGGTTGCCAAGGAGCAGCGTCTGAGGTACCTGCAGCAGCAGGACCACAGACAGggccagacggtgtcagaggctGGGAAGCTACAGAGGTTGATGGAGCGAGTGGAAAGTCAGGAGGCCAAACTAAAGAAGATCCGCGCCATGAGGGGCCAGGTGGACTACAGCAAGCTCATCAATGGCAACCTGTCGGCTGAGATCCAGCATGTGAGTGGGCAGTTCCAGGAGAAGCAGGCAGAGCTGCAGTCAGCTGTGGTGAAGGTGGACCAACTCAACCAGCAGCTTGAGGACCTGAGGAGGGGACGTCTCAACGGCCTGCAGCCCCTAGGAGGACCTCTCACTGGCACCGCCGCTCTGGAGCTACGCAAACTCTACCAGGAACTACAGgtGCGTAACAAGCTGAACACGGAGCATAGTGGCAGGCTGCAGCAGAACAAGGAGCTGCTGAATAAGCGCAACACGGAGGTGACTATGATGGACAAGCGCATTGGGGACCTTCGCGAGCGCCTGCACAAGAAAAAAACAGAGCTTAACAGGATAAACGGTCCTCCCTCCCCCCAGCCCACTCCCAGCAGCTCAGGCCGCGTAGCCGCGGTATGTCCGTACATCCAGGTGCCCGTCCCAGGCAGACAAGAGGTGGGCTATGCTCTGCCCCCAGACCCCGTTAAACCACCGTTTGTCCCTGGGACTGGCACCATCAGCCATGGCCACTCCAAATCAGAGGAGGAAGGGTGCGGTGTGAGGAAGCCCTTCGTCCAATGGAAGGTCTCAGATTTAGACATCATAGTGGACCCCGTGGAGATGAGAGAGGTGCCCCGGTCCCCCTCAGGGGCCTGCAGTGCCGACACAGTCTGGAGCCAGGGGCTAGGGCAGCAGAAGCAGAGGGGCCTAAGTAACAGGGCTCAATATCAACAACATAAATCCAATGAAGCAGTGTGGCCCACCCTTAGTAAAAGTGTCTCCTTGATGCAACCTTCAGATTGGAGGAACACCAGCCCAGACCAGAGCCTTGACTTCAGTAAGCTACCAGGAGGATCCGTGTCCAAACCACTACCCATCTACGGGACCTACCCTGCACCTACTGGCCACCCGTCTATAGTCTGCTCTACCAGCTCCCTGACCAGGTCTGCCCCTGCCACTTTAGCCTGGCAGCGTTCAGCCCCAGAACCTCCTGGTTACTCCTCCCAGCAGATCCAGCAGCGTATCTCTGTCCCCCCTAGCCCCACACCCCAGTCAGgtctgggggagggggagagtcaTGACCCCCTGCCGGCTGTGGCTGTGAGGCCCTACGTTCCAGACCGGTCATcctccaggcctcagtcccccaGGAAGGGCCCTGCCACTATGAACTCCTCCTCCATCTACCACATGTACCTGCAGCAGCCTGCAGCAGCCAAGAGCTACCCAGCAGGAGGCAGGTCTGCTGTCAAAGCAGTGTATGGGAAACCCGTGCTTCCCTCCAgcacctctccctcccctgtgCCCTTCCAGCATGGGGCCCTGTCcccaggaggagagagtggagaggacatggtggACAGGGAAGGGGACACCACAGAGGGTAGACTCCTACCCTCTCCCAGCGTGGAGAACATCCCGCGACCCCTGAGCCCCACCAAGCTGACCCCCGTGGCCCACTCCCCGCTGCGCTACCAGAGCGACGCCGACCTAGAGGTCCTGCGCCGGCGGCTGACCAATGCACCGCGCCCGCTGAAGAAACGCAGCTCCATCACAGAGCCAGAGGGCCCCACCGGACCCAACATCCAGAAGCTCCTGTACCAGCGCTTCAACACTCTGGCCGGAGGCATGGAGGGCAGCAACAGCACCCCATTCTACCAGCCCGTCTTCATGGGTGGTGTCCTGGGATGTCCGGACATGGACAACATCAACACTTCTAATGGGAACCTGATCGGGACAGCTTCCCTGGTCGTCACTGCCGCAGACGGTACCAACTCAAACCATCGCCTGTCCTCTTCTATGTCCCCTTCCTCTGACTCCAATGAGAGGAGGACACTCCCAACCAGTGAGACCACTCCCCACATGCCCACCTCCCAGCCCAGCTTGGAAGACAACAACAACCAACCTGGCACCAACTCCACTCCCAGGCCCATCCCCATCCCTGAGGCCTCGTCTCCCCAGCCGAAAGAAACCTCTCCCCGGACTGTCACACCCCCGGCATTGCCTAAGCAGATCAAGAGGACTAACCTGAAGAAACCTGAGTCAGAGAGGACAGGCCACGGGCTGCGGGTTAAGTTCAACCCTCTGGCCCTGCTACTGGATGCCTCTCTGGAGGGAGAGTTTGACTTGGTGCAGCGGATCATCTATGAGGTTGAGAACCCCAGCACGGCCAATGACGAGGGCATCACCCCCCTTCACAACGCCGTATGTGCTGGACGTCACCACATCGTCAAGTTCCTGCTCGACTTTGGAGTTAACGTCAATGCTGCTGACAGCGATGGATGGACCCCACTACACTGTGCTGCCTCCTGTAACAGTGTGCATCTCTGTAAGCTGCTGGTGGAGTCAGGGGCGGCCATCTTTGCCACCACCATCAGTGATGTGGAGACAGCGGCTGATAAGTGTGAGGAGATGGAGGACGGATACACACAGTGTTCCCAGTTCCTCTTCGGGCTGCAGGAGAAGCTGGGGGTGATGAATAAAGGGTCTGTGTATGCGCTGTGGGACTATGAGGCACAGAGCTCAGATGAGCTGTCCTTCCACGAGGGAGACGCCATCACCACCCTGAGTCGCAGCGACCACGCTGAGACAGAGTGGTGGTGGGCCAGGCTACATGACAAGGAGGGCTACGTACCACGCAACCTGCTCGGGTTGTATCCAAGGATCAAGCCTAGACAACGTTCTCTGGCATAGAGAAGACGTGCACTATGCTGAGAACGCAGTGCACGTTGTTGTGCTCTGACTGGGCTCAGAGCTGGGTCTGACTGGATCTGCAGACAGTGGCTGTGCCCGGACAGTGCCCTCTCTTTGTGCCAGTCTGTGCCTCCCCAGAACAAAGGACAAGGGCCAGGGCATGGACAGAAGGGGCcatatccagacagacagacatgcttgGAATTGGTGGTCACTTACCTAAGAGGAAGTAGAGGCAGTATCCATGGCCCAGAGATCTGTCTACATTTTTTTGAAGGTCCCCCCCTGCCCTTCATTGGACCATGAAGCAATGAAGCTCATTGGATCATGAAGCAATgaaacaaaacatttttgttttattttcaatgactccCACCGCCCTGCCACCACCCCTCATTCAGAGAATACTCTGAGCAGAGCTTCCCTCTTTCCCTTCTCACTCAGTGTTTGTCTCCTGTGTGTCAGTCAGAGTTAGGCCTAAATGTGATGATCTCAGAAAAGGGAATAGAGAACAGGGGCAGTCATGAGTTATTGAATATGGGTTTTGCAGTAAGTGCTGTTTGAAGGCGATCAGAGTTCAAACCCTGGAGGTCATATCTTCAGGGTTCAGCAGAGGAAACAAAGGAACAGGTTTTTACAAGATGAGAAAAGGAAGGAAAGTGACGGAAGGTGTAATTGAAAGACTTTGAAGGCCAGTTAAAACTACTAAAAGATGTGTGGAATGTTCTAAACAGTCATATAATGTTGGTGTTATTTATGCAAACCCAAACGTGTTCTGAAGGAATGAGTGGAATATGTAATGCTGGGATGGGAAAGTGAAAGGGGCTGCATTCTCTTCTACAGATGCAATAACTATGAAGCTAACTATGGGTGTGAATTTGAACTAAACTCAAACACTCATAAGCCTACAGTATATAAATGCTTTATCACCTAAAAAGGCCTATAGTTGGATCTCTCTTTGGAGTTTTTCATTTTGAGTTACATTTTAGCAGACGTTTGTACATTGTATTGTTTTCCCTATTTTTGTTTCAAGTTGGTTGTTGTCTTTTTAATTCCCATCATGCAAAGTGATACACATTTTGATCACTGAGTATAGccataccacaggaggttggtggcaccttaattggataGATGGGCTTGTGGTTATGGCTGGAGCggattagtggaatggtatcaaatacagcaaacatggtttccatgagtttgatgccattccatttgctccgttccagccattattgtgagacgtcctcccctcagcagcctcctctgaGCCATACTGTACTATCTTTGGTATAGCCTACCTGTTGACTGATGCTGGCTTGATCTATAGGTTGTGTATTACCATCAGTTCTATGGGATGGTTTATGTGACAAAACGAACACCAAACAATATGCATAATGAAATGTAAATGTACACAATAAATAATGATTTCCCTTAAATgggaataaaaaatgttttaacatatactgaacaaaaatatgaatgcaacatgtaaagtgttggtcccatgtttcataaactgaaataaaagattccagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2253467 lncRNA downstream 3556 29216457 ~ 29217167 (-) True G1971183
TU2253303 lncRNA downstream 6970 29213540 ~ 29213753 (-) True G1971038
TU2253293 lncRNA downstream 10277 29210114 ~ 29210446 (-) True G1971028
TU2253290 lncRNA downstream 11698 29207990 ~ 29209025 (-) True G1971025
TU2253072 lncRNA downstream 173564 29046930 ~ 29047159 (-) True G1970839
TU2253535 lncRNA upstream 33860 29278388 ~ 29278611 (-) True G1971213
TU2253540 lncRNA upstream 37558 29282086 ~ 29282319 (-) True G1971218
TU2253568 lncRNA upstream 100257 29344785 ~ 29349895 (-) False G1971239
TU2253566 lncRNA upstream 103415 29347943 ~ 29349969 (-) True G1971239
TU2253620 lncRNA upstream 160452 29404980 ~ 29405604 (-) True G1971274
XM_036962823.1 mRNA downstream 14501 29135361 ~ 29206222 (-) True daam1a
XM_036962822.1 mRNA downstream 29270 29135361 ~ 29191453 (-) False daam1a
XM_036962824.1 mRNA downstream 51090 29135361 ~ 29169633 (-) False daam1a
XM_036962820.1 mRNA downstream 98546 29113615 ~ 29122177 (-) False LOC110505745
XM_021585170.2 mRNA upstream 22524 29267052 ~ 29270880 (-) True ptp4a2a
XM_021585172.2 mRNA upstream 46176 29290704 ~ 29318925 (-) False si:ch211-266o15.1
XM_036962674.1 mRNA upstream 46176 29290704 ~ 29320877 (-) False si:ch211-266o15.1
XM_036962670.1 mRNA upstream 46176 29290704 ~ 29320878 (-) False si:ch211-266o15.1
XM_036962673.1 mRNA upstream 46176 29290704 ~ 29320878 (-) False si:ch211-266o15.1
TU2252826 other downstream 358736 28857940 ~ 28861987 (-) True G1970606
TU2251917 other downstream 1076961 28143438 ~ 28143762 (-) True G1969724
TU2251892 other downstream 1119287 28099921 ~ 28101436 (-) True G1969699
TU2250152 other downstream 2455352 26716684 ~ 26765371 (-) True LOC110505716
TU2249876 other downstream 2682015 26535364 ~ 26538708 (-) True G1967882
TU2253707 other upstream 278232 29522760 ~ 29525046 (-) True G1971357
TU2254903 other upstream 737756 29982284 ~ 29982900 (-) True G1972454
TU2255230 other upstream 1263023 30507551 ~ 30508058 (-) True G1972746
TU2255304 other upstream 1372060 30616588 ~ 30675515 (-) False G1972810
TU2255302 other upstream 1381561 30626089 ~ 30683403 (-) False G1972810

Expression Profile