RNA id: XM_021585171.2


Basic Information

Item Value
RNA id XM_021585171.2
length 1443
RNA type mRNA
GC content 0.48
exon number 2
gene id gjb9a
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29272002 ~ 29274608 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGTATACAGTCCTCACTCCTCACACACCTGGGGCTGGTAGTTTTCCATGTGACACAGGCAGGATttctgagaaaggagagagagatacccgAGGATAGACTCCTGCTCTGTTTGTTCCGCTGGAATATTTACATTTTTCTGATCCCAGTTCATATCCCAAGCCACAGGGATGAACTGGTCAGCACTAGAGAGCCTACTCAGCGGGGTCAACAAGTACTCCACTGTGTTTGGCCgtgtgtggctgtccatggtgTTTGTGTTCCGTGTCATGGTGTTCGTGGTTGCCGCCCAGCGTGTGTGGGGAGACGAGAGCAAGGACTTTGTGTGCAACACCAGGCAGCCCGGCTGCACCAACGTCTGTTATGACAGCATCTTCCCCATCTCACACATCCGCCTGTGGGCCCTCCAGCTCATCTTCGTCACCTGTCCATCTCTCATGGTCATGGCTCACGTCAAGTATCGTGAGGGGAAGGATTCAAAGTACGCTTCCCAGCACCAGGGCTCTCACCTGTACGCCAACCCAGGGAAGAAACGTGGAGGCCTGTGGTGGACCTACCTGGTCAGCCTGATCTTCAAGGCCGTGGTTGACGCAGCCTTCCTTTACATTCTCTACTACATCTACCATGGCTATGACATGCCACGTCTCTCCAAGTGTGCCCTGGAGCCTTGCCCAAACACAGTGGACTGCTACATATCCAGGCCCACGGAGAAGAAGATCTTCACCATCTTCATGGTGGTCTCCTCAGCCGTCTGCATCTTCATGTGCATCCTGGAGATGTTCTATCTGTTGGGAAAGCGGTTACACAAGGTGCTTAAAGTACGGCAGGCCAACAAGAGACTTCTCTTCGCTGAGTGCCATGAGGTGACCAACATCGCTCTGCCGAGGTCATCGTATATCAGGGTAGATCCAACTATTGGGAGCCAGCAGAACATCAGCAGACAGAAGAAGGCAGAGGAGGCTGCTGCCACAAGTCTGTAGTCCTGATCTGTTTGATTTTGGTGCAtatagcactgactttgctgagagctactttattgaggaaaaatttacttagatatgtggttgtcccacctagctatctaaagatgaatgcactaactgtaaattgctctggataagagcgtctgctaaatgactaaaatgtaaatccATATTGCACTGACTTTGGGGTGGCTACTTTATGGAGGAAAAAcatacttactatgactgagatatatggttgtcccacctagatatattaagatgaatgcactaactgtacaTTTTACTCTATACTggagcattttggatttgagatcaagtCTTTTATATGaagcgacagtacagaatgtacCGCTTAGAAATTAAAGGGGGTACAGGGGTACAGGGTTATTGTTGgagatatgtacatactgtataggttggggtaaagtaactaggcaacaggatagataataaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2253306 lncRNA upstream 50235 29221113 ~ 29221767 (+) True G1971041
TU2253308 lncRNA upstream 54881 29216815 ~ 29217121 (+) True G1971043
TU2253300 lncRNA upstream 59077 29212710 ~ 29212925 (+) True G1971035
TU2253175 lncRNA upstream 95291 29176404 ~ 29176711 (+) True G1970921
TU2253147 lncRNA upstream 127206 29143867 ~ 29144796 (+) False G1970898
TU2253331 lncRNA downstream 1500 29276108 ~ 29276731 (+) True G1971066
TU2253336 lncRNA downstream 7276 29281884 ~ 29282087 (+) True G1971071
TU2253338 lncRNA downstream 9274 29283882 ~ 29289836 (+) True G1971073
TU2253354 lncRNA downstream 35545 29310153 ~ 29310649 (+) True G1971088
TU2253357 lncRNA downstream 39273 29313881 ~ 29314303 (+) True G1971091
XM_021585160.2 mRNA upstream 139077 29129043 ~ 29132925 (+) False LOC110505748
XM_036962819.1 mRNA upstream 158338 29106207 ~ 29113664 (+) False ccdc175
XM_021585157.2 mRNA upstream 158338 29106211 ~ 29113664 (+) False ccdc175
XM_021583111.2 mRNA upstream 165960 29101062 ~ 29106042 (+) True LOC110504335
XM_021585156.2 mRNA upstream 670139 28548548 ~ 28601863 (+) False LOC110505743
XM_021585176.2 mRNA downstream 46726 29321334 ~ 29326173 (+) True adprs
XM_021585184.2 mRNA downstream 51666 29326274 ~ 29334901 (+) False LOC110505757
XM_021585182.2 mRNA downstream 51668 29326276 ~ 29334898 (+) False LOC110505757
XM_021585183.2 mRNA downstream 51690 29326298 ~ 29334901 (+) False LOC110505757
XM_021585180.2 mRNA downstream 51709 29326317 ~ 29334901 (+) False LOC110505757
TU2252207 other upstream 858083 28413600 ~ 28413919 (+) True G1970001
TU2250361 other upstream 2183686 27081262 ~ 27088316 (+) True LOC110505721
TU2250362 other upstream 2194862 27072415 ~ 27077140 (+) False LOC110505721
TU2250364 other upstream 2215335 26988839 ~ 27056667 (+) False LOC110505721
TU2249960 other upstream 2616666 26654905 ~ 26655336 (+) True G1967965
TU2253384 other downstream 199512 29474120 ~ 29478383 (+) True G1971104
TU2254300 other downstream 1048905 30323513 ~ 30330437 (+) True LOC110505775
TU2254659 other downstream 1355720 30630328 ~ 30632667 (+) True G1972242
TU2254661 other downstream 1362446 30637054 ~ 30655039 (+) True G1972244
TU2254663 other downstream 1384796 30659404 ~ 30679995 (+) True G1972245

Expression Profile