RNA id: XM_036962676.1


Basic Information

Item Value
RNA id XM_036962676.1
length 1752
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110505757
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29326274 ~ 29334901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggggagggctttgtatgcatcgcagaagttTGAGTAGCAGTGGTCAAGTGTTTTACCCCCACCCgtagtgcaatcaatatgctgatagaatttaggtagccttgttctcaaatttgctttgttcaaatccccagctacaataaatgcatcctcaggatatatggtttccactTTATATCGAGTCAGTGAAGTTTCTTTAGGGCTGTCTTAGTGTCTGCTTGAGGTGTTATGTATCCAGATGTGACGATAACTGACGAGAATTATCTTGGAAGGTAATATGGCCGGCATTTGATAgtgaggaattctaggttgggtgagcggaaggacttgagttcctgtatgttgttatgattacaccgtgagtcgttaatcatgacgGCGCGATGCATGGGGAAGCCCAgtggctgaaccgattccgacaatgtatcccgagagagccatgtttctgtgaaacagagaatgtagcaatctctgatgtctctctggaaggcaccCTTGCTCTAATTTCGTCTTtgaccttgttgtcaagagactggacattggcgagtagtatacttggaagcggtgggcgatgtgcacgtctatggagcctgaccaggccgctccgtctgccccttctgcgccGCCGTTGTCTTGGGTCGgctctgggattagatccattgtcctgggtggtggtccaaacagaggatccgcttcgggaaagtcatattcctggtcgtaatgttgTAGGCCTACAAGGATCAGAGACGACCACTCCTGGCAGAAAGTCCCAGTCTGCAGTGACTGGCAGTGCAAGGAAAGTGAAGGACAACGCAGCAGACTGGCACAATCTGATTCTGAAGTGGGACCGACTGAATGATGAAGGATCCACCATGGCAAATAAGATAGTCAATTTAGGATTCAATAAAAGTTCACAGAAAGAGATGCAAGTCATGATGGCGGGTCAGGACACCTCTGCCAGCTCTAATTCAGAGAATGCTTTTGAAAACAGTAGAGAACTAGAAGAGGAGTGTGACAAGTTGCTAAGTGTCGTGGACAAAATGACTCATATTGTATCAAAAATGGAGAAGTTAGTTTCCTCTGAGAAGGGGATCGTCGATCTAGAGACATTCCAGTATGGAACAGGAGGAAGACAAACTCCTTTGTTTCAGACCTGGCCTACGTCACAGTTCGACGTCTCCAACAAGCTCTATGAAGCATACAAGCAAGAACTGACTCTGAAACGGGCTATTCTTCAGGAGCTAGCTCACACAACTAACCCAGACCTTTCAATGGTGTACCTGTCCTGCTGGCTGTATCAGCCGTACACAGATGACAGGGCAAAGTTACTGTTAGAGGGTCTTCTTTTAGAGACAGGGCATAGGCCAATTTAACCAACTTCAGTTGGAACATTATATTTTGTTTATGGACTTATGGCTACTGTACTAACAAGTCCATAAATAAATGACAACTACTGTATGGCCATTACAAAGGAACTCATGCACAGCAATGCTGCTGGTTTCAACTCCATGAAATAATAGAATGATTTGGTTCTCGCATCCTTTATTAGGAAAATGAGTTCAACTGTACAGCATATGAAATGGTTGTATTGCAACAATGAGTCACAAATGAAACATGGAAATGAATAACCACAATTTCTTAACTTTTGATTTTATTTCCCCTCATTTGCATTCATTTTCAATGGTATTAGAAACCTATTTTTTGAAAATGTTACACCCAAATATATAAAAAGTAATAAAATAGTGCAACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2253357 lncRNA upstream 14237 29313881 ~ 29314303 (+) True G1971091
TU2253354 lncRNA upstream 17891 29310153 ~ 29310649 (+) True G1971088
TU2253338 lncRNA upstream 38704 29283882 ~ 29289836 (+) True G1971073
TU2253336 lncRNA upstream 46453 29281884 ~ 29282087 (+) True G1971071
TU2253331 lncRNA upstream 51809 29276108 ~ 29276731 (+) True G1971066
TU2253704 lncRNA downstream 187421 29522322 ~ 29522574 (+) True G1971354
TU2253715 lncRNA downstream 195273 29530174 ~ 29530374 (+) True G1971365
TU2253726 lncRNA downstream 202368 29537269 ~ 29537535 (+) True G1971376
TU2253730 lncRNA downstream 204166 29539067 ~ 29539326 (+) True G1971380
TU2253739 lncRNA downstream 210175 29545076 ~ 29545490 (+) True G1971389
XM_021585176.2 mRNA upstream 2367 29321334 ~ 29326173 (+) True adprs
XM_021585171.2 mRNA upstream 53932 29272002 ~ 29274608 (+) True gjb9a
XM_021585160.2 mRNA upstream 195615 29129043 ~ 29132925 (+) False LOC110505748
XM_036962819.1 mRNA upstream 214876 29106207 ~ 29113664 (+) False ccdc175
XM_021585185.2 mRNA downstream 7550 29342451 ~ 29377849 (+) False LOC110505758
XM_021585186.2 mRNA downstream 7840 29342741 ~ 29377849 (+) True LOC110505758
XM_036963068.1 mRNA downstream 46812 29381713 ~ 29392098 (+) False LOC110505760
XM_021585187.2 mRNA downstream 46828 29381729 ~ 29392098 (+) False LOC110505760
XM_021585188.2 mRNA downstream 46832 29381733 ~ 29392098 (+) True LOC110505760
TU2252207 other upstream 914621 28413600 ~ 28413919 (+) True G1970001
TU2250361 other upstream 2240224 27081262 ~ 27088316 (+) True LOC110505721
TU2250362 other upstream 2251400 27072415 ~ 27077140 (+) False LOC110505721
TU2250364 other upstream 2271873 26988839 ~ 27056667 (+) False LOC110505721
TU2249960 other upstream 2673204 26654905 ~ 26655336 (+) True G1967965
TU2253384 other downstream 139219 29474120 ~ 29478383 (+) True G1971104
TU2254300 other downstream 988612 30323513 ~ 30330437 (+) True LOC110505775
TU2254659 other downstream 1295427 30630328 ~ 30632667 (+) True G1972242
TU2254661 other downstream 1302153 30637054 ~ 30655039 (+) True G1972244
TU2254663 other downstream 1324503 30659404 ~ 30679995 (+) True G1972245

Expression Profile