RNA id: XM_021585185.2


Basic Information

Item Value
RNA id XM_021585185.2
length 5860
RNA type mRNA
GC content 0.52
exon number 20
gene id LOC110505758
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29342451 ~ 29377849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGCCATGCATCATTGTATTCCCGCGAGACTAGGAAGTCGTAGGGTTGTTGACAACCAGAGCGCTTGACATTCTCGAATAATAAATCATAGAAAGATGCGATAGCAATGTCGCCAGCGCTATCTTTTATACACGATTTTAGCGTAACGTATGTGTCATCTATATGATAACAGGATATAGGGACATAATATAATAGCAGAGCATTGCCTGTGCACTATGGCAGCCCAAACTCCCCCACAGAGCGCCCTGAGGGAGTTCTGTCCCCTATACTACTTGCTTAATGCAATACCTGCCAAGGTCCAGAAAGGCTTCCGCTCTGTAGTGGTCTACCTGACTGCTCTGGACACCAACAGCGATTACATTGCTGTGGGGAGCAGTATCGGGATGCTCTACCTGTACTGCAGGCGGGTCAGCCAGATTAATAAATACAGCATAGAGGGGAAATCCGAAGCTATCACAGCAGTGAAGCTGCTCAGTTGTTTTGATGACTTGGTGGCAGTGGGCACGGTGTTTGGTCGGGTTGCTGTCTTTCAACTGGTGTCTCAACTTCCAGGCAGGAACAAACAGCTAAGGCGATTTGATGTGGTTGGTTTGCACAAAAGCACAGTCACTGCCTTGGCCTGGAGTGCTAATGGAATGAAGCTCTTCTCTGGTGATGACAAAGGAAAGGTTGTGTACTCTACCGTGGACCTGGATCAGGGTGTGTGTAACCCAGTGCTACTGTTTGAGGAGCTCTCAGCCATAGTCCAGCTGGAGTACAGTCAGAAGGTCCTGCTCATCTCCTCTTATCAGAGATCCCTGCTGTTCTACACCCAGGAACAGAACCTGCAGCAGCTGGGCACCAAGCCTAGGAAGAGCAATGGGAAGTTTGGTGCGTGCTTCCAGCCAGGCCTGTGTAAGCAGAGTGACCTGCTTGTCTATGCAGCGAGGCCTGGCCTCCGGCTGTGGCGGACGGATGTAAGTGGGCATGTGGTGGACACACTGGTCCTCAAGCGTCTGTTCAACCAGGAGGTGCCACAGTTTGAGCTGTTTGCCAGGCCGGGCCCCACGGGGGGTTGTCGGCCCCACGAGAGGCAGCTGGGTGTGGTGAGCTGCTTCCTCAGAGAGGGCTGGGTCCTCAGCTGGAACGAATATAGTGTCTACGTGTTGGACTGCCTCAACCAGGTGATCATCGGTGCACTGGAGAGCTGTGGGGACATCGTCTCTGTATCATGCACCGAAAATGAAATCTTCATCCTGAAAGGAGATCGGGACATTGTTCGCATCTCAAATGCTCCTGAGGACTTGGCTTCCAACATTTCTGAGTTGTCCTTCCGTCTGACCTCTCCCCTGACCACTCCAACCATCCTGCTCCCTCCCACCGGCTCTGTGGAGACAGTCCAGACTATCAGGACAATGGCCATCATCACAGAGCCGGGGGAGCGGGAGAGGCTGGTGGATGAGGAGGTGCTGGAGCAGGACCAGCTGAGTAACAGCCCCGAGGCGGGGAAGGCCGGAGCCCTGATGGAGAGGCCTGAAGTGGGGGAGCGACTGGACCACCAGAGAGGGGGCAGTGTAGGGGGCACCAGTGATTTTCATAGCCGCAGCAGTTCCATCACGTCCTGCGACAGCGTTCAGGGCATGATGCTCTCCACCAGCACCATGGAGCAGTCAGAGCTCTCCTCCAGCCAATACAGTGCCATCAACCAGGAGGACTTTCAGCATGAGCTGGTGGTCCAGGCCATAAAAGTCAAGAAGAAGGCCAAGAGGAGGAGGCAAGAAAGTGGAAACCGCATCAGTGAGCAGCACAACAGCTGGTCCGAGAGCATTTACAGTCAGGATGGAGGAGGGGGCAGCGACGGGGGGACCCGCACCTCTATCAGTGAGCCCCCCTCAGCTTCCGACCACACAAGTTTCCCGTGCAGCAGTCTGGACCTACAGAGCAGGAGCAGCGGATCCCCCGACCAGGAGGGCTCCATCAGTGGGGGCTCTCCAGAACTCACTGCCTCTGGAGCTCAGAGCCAGGGTGGTGACCAGAGAGAGGACCCTCTGACTCAGACTCAACCCCCTGGGACTCAGCCTCCCTCCTGCCCCATGTCCCTGCCCTCCCAGTACATGGAGTGCCAGTCCTACCCAAAGAATGGCAACAGCCCCTCCATCACTAACAAAGAGGGGGAGGCTCCCACCCGACACGTAGACCTATTACTGGAGTGCACCTTTGCCTACATGCAGACCTCGAAGGAGCAGGACCCCATGGAGGATCAGGAGGATGATCTCCTGAGCCCCCTCATTGGGCTGGATGACTTGGACCAGGACGACCCCCACCACCAGCACTGTCTGCTGGATCTGGAGCCTCCTAGCTGTGTTGATCAGATGTGTTATTCCCTGGAGCCTGAGCAGGGCCCCTCAAGTGACGAGGAGGACATTTACGCTGTCCACAGAGTTCCGTACTCAGCCTCCAGCGCCAGCCTGGGAGACGGACTCAATGCCCTCAACCTCCAGGGTTCCAACATCAGGCAGCAGGACCAAGACAAGACAttgGCAGAGAGCTGGATGGGCTACACAGGGCCAGGCTGTGGCATCCTCAACCTGGTTGTGACTGACCAATACATCTGGTGTCTGGACTTTAAAGGAGGCCTGTACTGCAGTGCCCTCCCAGACAGGGGCCTGAGCTGGCAGAAGTTTGAGGACAATGTGCAGCAGGTGGCACTGTCACCTTCAGGGTCCCTGCTATGGAAGGTGGAACAGAAGACCATGACAGCGTATGCATGTGGTAAAGTCACCATCAAAGGAAAGAGGCACTGGTACAAGGCCCTGGAGGATTCTGCCTTTGTGGCGCTTGGTGAAGACACAGCATGGATCATCCGAACCAGCGGGGACCTCTACATGCAGACAGGTTTGAGTGTGGACCGTCCGTGTGCACGAGCTGTGAAGGTGGACTGCCCATGTCCTATGGCCCAGATCGCAGCGCGTGGCGGGGTGGTGTGGGCCCTCAGCCAACACAGGGCCGTCTTCTACAGAGATGGCGATGGCCTGGGGGAAATGTGGAAGTATGACAAAATCAGTGAGAGTCAGGGTCTGGAGGCCATCTGTATAGCCCTGGGAGAGAGCAACACGGCTTGGGCTCTGGACACCAGCGGCAGTCTGTGGTTCAGGACTGGAGTCACTGCCAGGAAGCCCCAGGGGGAAGATGACCACTGGTGGCAGGTGAGCATCACAGACTATGTGGTGTTTGATCAGGGAAGTCTGTTCCAGACTCTGATCCAAGCCACTCAGAACATGGCCACAGCCACCAAGGCCCCGGTGGAGCGGGTTGCAGAGTGCCTCCGCATGGCCTTCCTGTCCCAGCAGTTCCAGTGCCAGCCCAGCCTGGTCTCCTCCAACACCAGCGGCGTCTGGATTGCATCCGGCAGGAACAACTTCCATGTCGCCAAGGGCAGCCTCAGCGGTACATTCTGGCAGGGTGTGGTACCCAGAGGAACCGTCTCAGCCACCAAGTGGGCATTTGTCTATTCCTCGGCTGTACTCAGTAAAGAAGgGAGCTTCCTGTGGCTGGGCCAGAGCAGGAAAGACCTGTTCTGTTTTTGGGACCAGGATGGTCAGATGCACCCCACCACAGTCCAACTGCCCCAGGACACAGAGATGGTCCAGCTCTCTGCCTGCCGCGATGCCCTGTGGGGATTGGACCAACATGGCCGCGTCCACATCCGCACCCTCTCCACTAGCTGCCCCACCGGCATGCACTGGAACCTACTGGACCTCAGCCAGCTCGATCAGGTAAGGCTGGTCAGCGTATCGTGTGGCAGTCAGAACGTGTGGGCGTGTGATGGCTATGGGATGGTCTATTTCCGCGTCGGTACGCAACCCCTCAACCCCAGCATGATGCTTCCTGCCTGGATTTGTATCGAACCACCAGAGCAGCCACTAGGAGTGCATTTTATTAGAATCCACACCAGTCCCAACGACAGCATGCTGTGGGCCATGGACAACAGAGGGAATGTACATGTCCGCACTGGAATCACAGACGAGATGCCTATCGGCACAGACTGGGAACACATTCCAGGCTTGCAGGCCAGTCAGCTGGTGCTGAGTGTGAAGACTGTTTGGGTGCGCTGCCCCAACGGGGAGGTGGCGAGGCGCTATGGTATCACTGACAAGAACCCAGCAGGGGACTACTGGAAGAAGATACCAGGCCTGGTCAACTGGCTGACAGTGACACCCATGGACGAGCTGTGGGCTGTGAGTGTGTCTGGAGGTCTGAGGCACCGGCTCACCGAGACCCTGGTGCACACCATCAATTCCCATGTCAACACAGGCTccctgagaggagaggacctggaggaggagtgggaggtcaTCTAAAGAAGACTTAAATTGtgttatattccctatatagtgcactacatttgactaggGATagtgcatagggctctggtcaagtcgtggactatgaagggaatagggtactatttcTCACGTTTCTCCCCAACTGGAACAACCACTCTTTATTAATATTCACTTTCACTACTGAAATGGGCTGCATTGCATTTATTGGTGGGCACTTtacctactgtatgtatttttaaTGTTATCATCCTATGTACATAATAGATTCTAAGGCAACTGCTAGGTGCTTATGAATCAGTACGGATTGCACAATGGCTCTGTGGACAGACAGGATGGGATGATTGGTGTTACCAAGGGAACGGGGTGTCTCCCAGACCACCTCATGCTGTGTACAACCAGTGTTTACTTTTAACCTAACCCAACCAATCCCTATTGAATTTAATTTAAGGAATTAATTGTTATATTAGTTTTTAAAAAAGTAATTATTGGTGACATTTTAGGAAGGCAATATTTTTCTTCATTTTAGTTAGTTTGCACTTTAATTGAAGTGGGAAGGTAACTGCACTCCCAGTACACAGCACTAGTCAAGACTTGCTACCCTGAGACCGTACACAGCATTAGTCTAGACTTTATACCCTAAGACAGTCTGTTGTTTTCTTAGAAAACATCCTCTCCCAAAGGAACTTACTGTAGCTCTTGTATTGTTTTTTACTTATCGATTTATTCCGATGAATACTGTACGTACCACAACACACTTAGAGCCTTCCAATAGTGTATCTTCAATTAAATATTTAGATCTGTCATACCTCTAGTCCAGTTGAACCACTATCACAGGAGTTATATAGGGCCATGGTCTTTGAATTATGTTTTCATGTTGTTTTAAAGGAAACTACGATGGTAGTATGAAGGAGATCCATTTTTTTTAATAACACAGAAGTAACGTGACTGTAAGTACTTGAATGGAGAAATGTATCATGTTAGTCACAGTGCAAGGGTACCACATAAGTGTAGGTGCTTGCTGTGCACATATTGATTGATGCTTCCTTTTTTTACTGTGGAATACTGTACTCACTAAGGAAGGGATATTTGCAGGAGTTTGTTCTGGGAGATTTATAACACGTGTATTTTGTATAACTACCAGAAAGGGAAACGAACCAAATAATTTATTCCGTCTTAATACAGCTACTGAATAATTAAGGGAATCATGCATTTAATGGTATCATATTGTTGCTTCTGAATACTGTACTCTAGTGCTATTTAATCCTTAGGAGTTTGCCAGTTCAATTCAGATTGACAAAGTCCGGGCCagaagtagtgcacaatatagatgaatagggtgccatttgagatgtaaAATCAGATTTAATGACAGATGTTTTACACTAGACAGGAAAACCCAAAGATCGTGTTGAAGTatcccctctgtgtgtgtctatatgggATACACAGCACTGCAAGTCCACTGAATCCTGTTGTATGAATCCATGCCTCTCCTCCATATGAATGAACTTCCttaataaaggtgtttacagAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2253357 lncRNA upstream 28148 29313881 ~ 29314303 (+) True G1971091
TU2253354 lncRNA upstream 31802 29310153 ~ 29310649 (+) True G1971088
TU2253338 lncRNA upstream 52615 29283882 ~ 29289836 (+) True G1971073
TU2253336 lncRNA upstream 60364 29281884 ~ 29282087 (+) True G1971071
TU2253331 lncRNA upstream 65720 29276108 ~ 29276731 (+) True G1971066
TU2253704 lncRNA downstream 144473 29522322 ~ 29522574 (+) True G1971354
TU2253715 lncRNA downstream 152325 29530174 ~ 29530374 (+) True G1971365
TU2253726 lncRNA downstream 159420 29537269 ~ 29537535 (+) True G1971376
TU2253730 lncRNA downstream 161218 29539067 ~ 29539326 (+) True G1971380
TU2253739 lncRNA downstream 167227 29545076 ~ 29545490 (+) True G1971389
XM_021585184.2 mRNA upstream 7550 29326274 ~ 29334901 (+) False LOC110505757
XM_021585183.2 mRNA upstream 7550 29326298 ~ 29334901 (+) False LOC110505757
XM_021585180.2 mRNA upstream 7550 29326317 ~ 29334901 (+) False LOC110505757
XM_036962677.1 mRNA upstream 7550 29326478 ~ 29334901 (+) False LOC110505757
XM_036962676.1 mRNA upstream 7550 29328540 ~ 29334901 (+) False LOC110505757
XM_036963068.1 mRNA downstream 3864 29381713 ~ 29392098 (+) False LOC110505760
XM_021585187.2 mRNA downstream 3880 29381729 ~ 29392098 (+) False LOC110505760
XM_021585188.2 mRNA downstream 3884 29381733 ~ 29392098 (+) True LOC110505760
XM_021585191.2 mRNA downstream 14707 29392556 ~ 29405607 (+) True LOC110505762
XM_021585192.2 mRNA downstream 30958 29408807 ~ 29451622 (+) True LOC110505763
TU2252207 other upstream 928532 28413600 ~ 28413919 (+) True G1970001
TU2250361 other upstream 2254135 27081262 ~ 27088316 (+) True LOC110505721
TU2250362 other upstream 2265311 27072415 ~ 27077140 (+) False LOC110505721
TU2250364 other upstream 2285784 26988839 ~ 27056667 (+) False LOC110505721
TU2249960 other upstream 2687115 26654905 ~ 26655336 (+) True G1967965
TU2253384 other downstream 96271 29474120 ~ 29478383 (+) True G1971104
TU2254300 other downstream 945664 30323513 ~ 30330437 (+) True LOC110505775
TU2254659 other downstream 1252479 30630328 ~ 30632667 (+) True G1972242
TU2254661 other downstream 1259205 30637054 ~ 30655039 (+) True G1972244
TU2254663 other downstream 1281555 30659404 ~ 30679995 (+) True G1972245

Expression Profile