RNA id: XM_036962945.1


Basic Information

Item Value
RNA id XM_036962945.1
length 4013
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC110505765
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29716602 ~ 29766891 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCGCTCAGCTCTTCTTTCCTCTCGCATCACCCTGTCTCACTGATGATGAGATCTATCATCTGTCAGCCAGGCAGGAGGCGGGCTCTGATCACATCCGAACAATCAAACATAACTGACGTAGGCTATACTTCATCGTCTTTCACCTCTCAAATGATTTAAGAGATTTTTCATAATCTCTCTGATTTCTATCATTCGTTTTATTATCCTTATAATCTCGTCATATTTTGCGTTCATGACACGATCGGAGATTTGACATTTTAGTTTGATATTCAAAACAGGCGGTTGTTTAGCGGTTAGACAAGTACGTAGATTTACACACCTATGTCAAATCGGTATTGTTTTGACTCCCGGGAGATTCATATGAGCGCTCCGCCAGTGATCCGACCGCCAAGTCCCCTGTCCCCGGGGTCCAATGGCATATCTTTCCAGATACAGATCGGGTTGAGCCGCGAGCCTGTTCTTTTGGACTCTGTCGACTTCAGCCTCGCTCAGGTCCGGGAGATGGCATGCTCCATCGTGGACCAGAAGTTACCCGAGTGTGGCTTCTATGGGATGTATGACAAGATCCTGCTGTTCCGCCACGACCCAGGCTCAGAGAACATCCTCCAGCTGGTGAAATGTGCTACAGACATCACAGAGGGAGACCTGGTTGAGGTGGTCCTGTCAGCCTCTGCCACAGTGGAGGACTTCCAGATCCGTCCCCATGGCTTGTTTGTCCACTCCTACCGGTCCCCTGCCTTCTGTGACCACTGTGGAGAGATGCTGTGGGGCCTAGTGAGACAGGGTCTCAAGTGTGAAGGTTGTGGTCTGAACTATCACAAGCGCTGTGCCTTTAAAATCCCAAATAACTGCAGTGGTATCCGCAAGCGGAGGTTGTCCAATGTCTCTCTGACCGGTTTGACCACACTGACCACCACACGGTCTAATGAACCTTCGCCTTTCACCTCCGACGAGGCCTTACTGTCTCCTGTCAGTCCCGGCATGGAGCAGAAGACACAGACAGACTTCTTTTCTGGCAGAGAGAGAAGGTCCTCTTCCTACATCGGCCGGCCTATAGAGTTAGACAAAATCCTCCTGTCCAAAGTTAAGGTGCCTCACACCCTTGTCATCCACTCCTACACACGCCCCACCGTCTGCCAGCACTGCAAGAAGCTACTCAAGGGCCTGTTCCGTCAAGGCCTGCAATGCAAAGATTGCAAATTCAACTGTCATAAACGATGTGCGCCCAAAGTGCCAAACAACTGCCTTGGAGAAGTGTCTAAAACTGAAGatcTGCTGAGCTCAGGGGCGGAGTCTGATGTGGGGATGGGGGAGGGTTGTGACGACCACGACAGTGACATGAACAGTGGTCTGATGGATGACATGGAGGAGGCCATAGTGCCTGACTCGGGCCTGCTGGAGGCTGGCCATGGGGAAATGGGAGACCTCCATGACCCAGAGGATGACTGCAACAGGGCTATAAgCCCATCTACTAGCAACAACATCCCACTTATGCGAGTGGTCCAGTCAGTCAAAAACACCAAGAGGAAAAGTAGCAATATCATGAAGGAAGGTTGGCTAGTGCACTTCAGCAGCAAAGACACTCTGAGGAAAAGACACTACTGGAGGCTGGACAGCAAATGCATCACCCTTTTCCAGAATGACACAGGCAGCAAATACTACAAGGAAATTCCATTGTCAGAGGTGTTGTCTCTGGACCCAGCGAAGACCTTCAACCTACTGTCTGAGGGCTCCAACGCCCACTGCTTTGAGATCGCCACGGGCAGCCTGGTCTACTATGTAGGGGAGAACCTGGCGAGGCCGGAGGGCCCGGGGAGCATGTCGGCCCACAGCAGTATGCTGGTCAGCGGGGTCGGGCCGGATGTGGCCAGGATGTGGGAGATGGCCATCCAGCATGCCCTCATGCCCGCCATCTCTAAAGGACTGTCACACGGGTCACGTCACAGTGGCCACAAGGATGTTTCCATCAGTATTTCAGTGTCCAACTGCCAGATTCAAGAGAATGTGGATATCAGCTCAGTGTATCAGATATTCCCAGATGAAGTCCTTGGATCGGGCCAATTTGGGATTGTTTATGGAGGAAAGCACCGAAAAACTGGCCGGGATGTAGCAATTAAGATCATTGACAAGTTACGCTTCCCCACCAAGCAGGAGAGCCAGCTACGCAATGAGGTCGCCATCCTTCAGAACCTGCACCACCCTGGGGTAGTGAACCTGGAGTGCATGTTTGAGACTCCGGAGCGCGTCTTCGTTGTCATGGAGAAACTCCACGGAGACATGCTGGAGATGATCCTGTCCAGTGAGAAGGGGAGGCTGCCTGAACGCATCACCAAGTTCTTCGTCTCACAGATTCTTCAGGCTCTTCGTCATCTCCACTTCAAGAATATCGTCCACTGTGACCTCAAACCAGAAAACGTCTTACTGGCGTCCGCAGATGCTTTTCCACAAGTGAAGTTGTGCGACTTTGGCTTTGCCCGCATTATTGGAGAGAAGTCTTTCCGTCGGTCAGTGGTGGGCACTCCGGCCTACCTGGCCCCTGAGGTCCTGAGGAATAAAGGCTACAACCGCTCCCTGGACATGTGGTCTGTGGGGGTCATCATCTACGTCAGCCTCAGCGGCACCTTCCCCTTCAACGAGGACGAGGACATTCACGACCAGATCCAGAATGCTGCCTTCATGTACCCACCCAACCCCTGGAAGAAGGTGTCCCAGGAAGCAATTGACCTCATTAATAACTTGCTGCAAGTCAAGATGAGGAAGCGCTACAGCGTGGACAAGTCGCTCAGCCATGCCTGGCTACAGGACTACCAAATGTGGCTGGACCTACGTGGCCTAGAATGGAAGATGCACGAGCGCTACGTCACGCATGAGAGCGATGACACCCGCTGGGAACGCCACGCTGAGCAGCACGGCCTGACGTACCCCGCCCACCTCGTCAACCCACACGCCGACGTTAGCGAGGGGGTGGAGCCTGACCACGAGTCGGAGGAGGTGGACTCCATGGCGGCCCTCAGCGACAGAgtcagcgtgatgtgaatactgTAAATGCAGGGATACTGTCCCCTTAAGAGTCAACGTGCTGTAGTACTGAACACTGCTGCCTCTGCCCCCTTAAGAGCCGTCTCACTCCCTCCACAACACAActaactgagtgactgactgagccCTCCATTCCCAGCCAGCAGCTAGGGGCTCGATATCCAAACTCTGCCTTTAAACTAACTTTCTAACTAACAAATAATCAAATTTCTAATTGTCTGTATATGAGTCAATCAGGTGTATTGCCTCCCTGCCTCATGAAAGACAATCTAACGTCTTATACTGTATAACTCTGGGTGTGAAGGATCATCCAGGTGTACTGTATGTTAAGTCAACAGCagcaaacaaccccccccccccaaaaaagccaGCTAAACGATTTAGTCAAAACCAAAATTAGATGTGTTTCACTGTGATTGGGTACGACCCAACGAGACAGCTCAGGACTAACCTTAGCGGTATTAAGAGTGAGAACTGATACTATTATTACTCAAGTTTTATTTCACTCTTGAATGTACCTTTATATGATGACATGATAAGAATTCACAGAAAACCAGTATAGCCAGAAATGGTggaaagacaaagacagagagggagatagagagcggACTCGGCTTCAAGAGTGTGGAGGCAAAATCCTGAGGCCTGGATACAGAGAAACAGTGAATGTAGAATACCTGTAAGCATTTGTTCTCATCATGAGCTAGCTGCTTTTCTAGTCTATAGTGTTGAAATGTGTTCATGATGTGATGCTGAATGTTGCGTATGTggctactgtacagtatgtttgtgCTCTTTGCGCGATTGCAACCAGCCTTTAATGCATTTTTGCCTACAGGGAATACATTATTTTCTCTGGCTacacatttaaataaatatatttcaaaGCTGATATGTAAGTCTTTAATACCATGGATTTATTACATGATTTGTGAGTTTGCTTTACACATACACCCCAATGCCTCGTGCCTT

Function

GO: NA

KEGG:

id description
K06070 PKD; protein kinase D

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2253942 lncRNA downstream 43799 29672124 ~ 29672803 (-) True G1971583
TU2253890 lncRNA downstream 69576 29646767 ~ 29647026 (-) True G1971540
TU2253846 lncRNA downstream 100810 29615569 ~ 29615792 (-) True G1971496
TU2253844 lncRNA downstream 101146 29615051 ~ 29615456 (-) True G1971494
TU2253823 lncRNA downstream 116544 29599841 ~ 29600058 (-) True G1971473
TU2254126 lncRNA upstream 31275 29798166 ~ 29828725 (-) True G1971747
TU2254196 lncRNA upstream 129849 29896740 ~ 29906400 (-) False G1971812
TU2254198 lncRNA upstream 134821 29901712 ~ 29906400 (-) False G1971812
TU2254197 lncRNA upstream 138177 29905068 ~ 29906400 (-) True G1971812
TU2254896 lncRNA upstream 172409 29939300 ~ 29939549 (-) True G1972448
XM_021585189.2 mRNA downstream 336063 29378279 ~ 29380539 (-) True LOC110505761
XM_021585174.2 mRNA downstream 376681 29334672 ~ 29339921 (-) False znf839
XM_021585175.2 mRNA downstream 376681 29334672 ~ 29339921 (-) True znf839
XM_036962672.1 mRNA downstream 395594 29290704 ~ 29321008 (-) True si:ch211-266o15.1
XM_036962671.1 mRNA downstream 395723 29290704 ~ 29320879 (-) False si:ch211-266o15.1
XR_005039594.1 mRNA upstream 71383 29838274 ~ 29857889 (-) True LOC118944366
XM_021585198.2 mRNA upstream 151390 29918281 ~ 29937851 (-) True LOC110505769
XM_021585200.2 mRNA upstream 175228 29942119 ~ 29979523 (-) False LOC110505770
XM_021585201.2 mRNA upstream 175228 29942119 ~ 29979523 (-) False LOC110505770
XM_021585203.2 mRNA upstream 175228 29942119 ~ 29979523 (-) False LOC110505770
TU2253707 other downstream 191556 29522760 ~ 29525046 (-) True G1971357
TU2252826 other downstream 854615 28857940 ~ 28861987 (-) True G1970606
TU2251917 other downstream 1572840 28143438 ~ 28143762 (-) True G1969724
TU2251892 other downstream 1615166 28099921 ~ 28101436 (-) True G1969699
TU2250152 other downstream 2951231 26716684 ~ 26765371 (-) True LOC110505716
TU2254903 other upstream 215393 29982284 ~ 29982900 (-) True G1972454
TU2255230 other upstream 740660 30507551 ~ 30508058 (-) True G1972746
TU2255304 other upstream 849697 30616588 ~ 30675515 (-) False G1972810
TU2255302 other upstream 859198 30626089 ~ 30683403 (-) False G1972810
TU2255303 other upstream 861370 30628261 ~ 30683403 (-) False G1972810

Expression Profile