RNA id: XM_021585197.2


Basic Information

Item Value
RNA id XM_021585197.2
length 2402
RNA type mRNA
GC content 0.48
exon number 24
gene id LOC110505767
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 29888717 ~ 29906400 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaaaacaactgggaactcggaaaaatacTAGATCTAGGCCCGAGTTgccgagttggaattccgagttgggtGGCCGTCCTAATCgaattttcccagtcggagctcgtttttttccGAGTTCACATTTATGTTGAACGCACGGAAATCGGAGATTTTCGAGTTCTCGGTTGTTTTGAACGCGACATTGAAAGCACCACTTGAGATCGCGGTAATGAGCGATATAGCAGACATCGAACGAGACTTGCCTGACCGGTCATCCTATGCCCGGTGTGATTGCATAAACAGAAAAGATGGCCGCCTCCGTCCGTGAAAAGCAGGCAGCTGCCTTGAAGCGCATGCTGAATTTCAATGCTCCTCCTTTGAAAAACACTGCTGCTGAGCCAGTATGGAAGGTGCTGATCTACGACAGGTGTGGCCAGGACATCATCTCCCCTCTACTGGCAGTCAAGGAGCTACGGGACATGGGGATCACATTGCACTTGTTGCTTCATTCAGACAGAGATCCCATCCCCGATGTGccagccatctattttgtgatgccGACAGAGGAGAACATTGACCGGATATGCCAAgaCCTTCGTAGCCAGCTGTATGAGTCTTACTATTTTAACTTCATCTCAGCCATATCTAGAAGTAAACTAGAGGATATTGCCAGTGCAGCTCTCTCAGCCAACGCTATCACACAGGTTACCAAGGTGTTCGATCAGTATTTGAACTTCATCACACTTGAAGATGATATGTTCATCCTCGGCAATCAAAATAAAGAGTTCATCTCCTACCATGCAATTAACAAGCCAGACATCATGGACACAGAGATGGAGGCCATCATGGATACTATAGTAGACAGTCTCTTCTGCTTTTTTGTCACTCTGGGTACTGTCCCCATAATCCGCTGTCCAAGAGGGAATGCTGCGGAGATGGTCGCGGTGAAACTTGACAAGAAGCTTCGGGAGAACCTGCGAGACGCCAGAAACAGCCTGTTCACTGGGGACAACATGGGGGCCAGCCAGTTCAGcttcCAGAGACCCTTATTTGTACTTGCTGACCGCAACCTGGATCTTGCCACCCCCCTCCACCACACATGGACCTACCAGGCCCTCATCCACGACGTGCTGGACTTCCACCTGAACAGGGTTAGTATGGATGAGTCTGTGGGGTCAGAATCCTCTCCTGCCGGAGCCAGACCcaagaagaagaacaagaagagTTATGACCTCACATCAGCCGACATGTTCTGGCAGAAACACAAGGGCAGCCCGTTCCCCGAGGTGGCTGAGTCTGTACAGGAGGAGTTAGACACATACCGAGCCCAAGAGGACGAGGTGAAACGCCTCAAGAGCATTATGGGTTTGGAGGGTGAGGATGAGGGACccattagtagtattagtatgtCAGACAACACCGCAAAACTTACCTCAGCTGTCAGCTCTCTGCCAGAACTTCTGGAGAAGAAGAGGCTGATTGACCTCCACACTAATGTAGCCACTGCCGTTCTGGATCACATTAAGAGCCGTAAACTAGATGTGTACTTTGAGTACGAGGAGAAGCTGATGAGCAAATCCACCCTGGAGGAGTCTTTACTGGACATAATCAGTGACCCTGACGCGGGAACACCGGAGGACAAGATGAGACTCTTTCTGATTTTCTACATCACAGCCCTGCAGCCCACTTCAGAGACTGATCTGGACCAATACAAGAAGGCTCTGCTAGACACAGGCTGTGACCTGTCCCCTGTCAACTACATCAAGCAGTGGAAGGCTTTCACTAAGATTGCTGCCACACCATCTAACTATGGGAACAGCGGTGTAAAACCtatgggCCTCTTCTCTAGGGTGATGAACTCTGGCTCCCAGTTTGTCATGGAGGGGGTGAAGCACCTGGTGCTCAAACAGCATAACCTGCCCGTCACACGTATCCTGGACAACCTGATGGAGATGAAGTCCAACCCGGAGACAGATGACTACAGATACTTTGATCCCAAGATGCTACGTGGCAGTGAGAGCTCCATCCCAAGGAACAAGAACCCGTTTCAAGAGGCTATCGTCTTCATGGTGGGAGGAGGGAACTACGTAGAATATCAAAACCTGGTGGACTACACAAAGGCAAAGCCAGGGAAGAGGGTGCTGTACGGATGCAGTGAGCTCTTCAATGCAGGACAGTTCATCAAGCAGCTGTCCTCACTCGGCCAAAAgtaaaaacaagaaaatatatgaacatttttattttcttcaatTCCATTTCTCCTAAATACTCAAGACCTCCCGAATTATACTGTAGAATCTTACCTCTAGGTTCTCTCTCTGATATTCCATGTATTTTATCATGTGTACTGTACTTACATTGTTTGTTTACCTAATTATCTTTACACTCTCAACAAATAAAGATTAACAGTCTTACTCAG

Function

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process
GO:0031101 fin regeneration biological_process

KEGG:

id description
K19998 SCFD1, SLY1; sec1 family domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2254021 lncRNA upstream 42297 29808077 ~ 29846420 (+) True G1971652
TU2253997 lncRNA upstream 108283 29766363 ~ 29780434 (+) True G1971628
TU2253891 lncRNA upstream 241275 29647138 ~ 29647442 (+) True G1971541
TU2253888 lncRNA upstream 242588 29645817 ~ 29646129 (+) True G1971538
TU2253885 lncRNA upstream 244883 29643591 ~ 29643834 (+) True G1971535
TU2254227 lncRNA downstream 32960 29939360 ~ 29939648 (+) True G1971840
TU2254220 lncRNA downstream 35743 29942143 ~ 29943150 (+) True G1971833
TU2254218 lncRNA downstream 41192 29947592 ~ 29948425 (+) True G1971831
TU2254269 lncRNA downstream 89572 29995972 ~ 29996919 (+) True G1971879
TU2254280 lncRNA downstream 122878 30029278 ~ 30031807 (+) False G1971889
XM_021585195.2 mRNA upstream 2358 29859648 ~ 29886359 (+) False LOC110505766
XM_021585196.2 mRNA upstream 2709 29860415 ~ 29886008 (+) True LOC110505766
XM_021585193.2 mRNA upstream 363641 29522690 ~ 29525076 (+) True LOC110505764
XM_021585192.2 mRNA upstream 437095 29408807 ~ 29451622 (+) True LOC110505763
XM_021585191.2 mRNA upstream 483110 29392556 ~ 29405607 (+) True LOC110505762
XR_002470865.2 mRNA downstream 33679 29940079 ~ 29941170 (+) True LOC110505772
XM_021585205.2 mRNA downstream 100961 30007361 ~ 30077294 (+) False LOC110505773
XM_021585206.2 mRNA downstream 100961 30007361 ~ 30077294 (+) True LOC110505773
XM_036962725.1 mRNA downstream 186055 30092455 ~ 30330735 (+) False LOC110505775
XM_036963003.1 mRNA downstream 430135 30336535 ~ 30846679 (+) False LOC110505776
TU2253384 other upstream 410334 29474120 ~ 29478383 (+) True G1971104
TU2252207 other upstream 1474798 28413600 ~ 28413919 (+) True G1970001
TU2250361 other upstream 2800401 27081262 ~ 27088316 (+) True LOC110505721
TU2250362 other upstream 2811577 27072415 ~ 27077140 (+) False LOC110505721
TU2250364 other upstream 2832050 26988839 ~ 27056667 (+) False LOC110505721
TU2254300 other downstream 417113 30323513 ~ 30330437 (+) True LOC110505775
TU2254659 other downstream 723928 30630328 ~ 30632667 (+) True G1972242
TU2254661 other downstream 730654 30637054 ~ 30655039 (+) True G1972244
TU2254663 other downstream 753004 30659404 ~ 30679995 (+) True G1972245
TU2254670 other downstream 788833 30695233 ~ 30696314 (+) True G1972252

Expression Profile