RNA id: XM_021585205.2


Basic Information

Item Value
RNA id XM_021585205.2
length 6390
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110505773
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30007361 ~ 30077294 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCGCCATTACTgactgggatgagagagaggagggagcaggtcTCCGATTACACACATACCACCAattaaacaaaatatataaaaacaaacacatttggaATAGAAAGAGGATACACGGAACGTTCCCCGTGAATTGCAGTGCACGAGCCGTTGAAAAATGGAATTTGCTGGAGTAAAATAATACACTTGGAATGCTACCTTTTTTCGTGGTCTCGGAGCTGGGAGCGACCATGTTAGGGAGGTCATAATAATGGAGAACCAGCTGCCCTATCCCAGCTCGAGGATCTAGGAGGATAGAGCGATTCACCACTAAAGGGAGAAAGCCATGAACGTGCACCAGCACCCTATCTAACCAAttggagtggaatgatagctgtgCTGTTAGAAGCCTTTCTTGAAATTGACAAAGCAATGACAGGGGGAATATAATGGCCAAGAACAAGGAGGCACGCCCCCCAACATATGCTGTTAGTGTTGTCGGCCTCTCagggacagagaaggagaagggcAATTGTGGCGTGGGCAAGTCCTGCCTATGCAACAGATATGTGTGTTCCAATGCTGACGGCTACTACACTGAGCACACTTCTGTGTTGAGCACAATTGACTTTGGAGGTCGTGTGGTGAACAATGATCACTTCCTCTACTGGGGTGAAGTGCCACACCGAAGCGATGACGGGCTCGAGTGTAAAATTCAAATCATTGAACAAACAGAGTTCATTGATGATCAGACTTTCTTGCCACATCGCAGCACAAACCTGCAGCCCTATAGTAAACGGGCTGCAGCCTTCAAGCTACAGTCTGCTGAGAAGCTGATGTACATTTGCACCGACCAGCTTGGCCTGGAACAGGATTTTGATCAGAAGCAGATGGCCGATGGGAAACTGAACATTGACGGTTTTTTATTGTGTATAGACGTGAGCAAAGGCTGCAATAGGAAATTTGAGGATCAGATGAAATTTGTCAACAGCCTTTATTCTCAAATGGTCAAATCGAAAAAGCCCATCGTCATTGCTGCAACTAAATGTGACGAGTGCATGGAGCAGTATCTAAGGGACCTTCAGGTGTTCGCTGCAAGCAAAAAGAACCTCCTGGTGGTAGAAACGTCAGCTCGATCGAGAATCAATGTAGACCTCTGTTTTAACGCGTTGACCCAGCAGATGGACAAAACACGAGGCAAACCTAAAATCATTCCTTATTTGGAGGCCTATAAAGTTCAGCGACAATTAGTAGCCACAGTGTCTGACAAGTTTGAAAAAAGGATTGTACAAACCGTCAGAGATTATCACACAAGTTGGAAAACAGTGAGTAACATGTTGAAAAACCACCCCGACTATGAGGAATACATCAACTTGGAAGGCACCCGAAAAGCTAGAAACACCCTCAACAAGCACATCGAACAGCTGAAGCAGGAACATATCAGGAAAAGGAGGGAAGAATACCTCTCGAGCCTGCCAAAAATTCTCAATAACTTGCTCAACAACTTGGAAGAACTCGAGAACCTGAGCTGGTCGGAGGCTCAAGGTATCTTGAAGAGCAGGGCTGAGTTTCATTTCTGGTTTGTGGTGCTGGAGCACACTCCGTGGGATGAGACGGACCAAATTGACAAAGTCAACGACAGAAGAGTGCCCTTTGATCTCCTTAAAACGTTGGAAGGGGAGAAGATTTTTCAGAACCATGTCCAGCATCTGTTCTCAGAGAAAATGCGGTTAGAAATGAAGAATAGATTCAAGAAGACATTGGATAGAGTCCATTTCATCAGCCCTGGACAACCCTGGGAAGAGGTCATGTGTTTTGTCATGGAGGACGAGGCCTACAAGTATATCAGTGAATCTGATCACAGAGATGTTTACAGCCAGCATCAGCAGGAAATAGTTGAAAGGGCCAAAGAGGAATTTCAGGAAATGCTTTTTGAACACGCAGAGCTGTTTTATGACCTTGATTTAAATGCCACCCCAAGCTGTGACAAAATGAGCGAGATCCACACTGTGCTCAACGAGGAGCCCAGATACAGAGCTCTGCAGAAACTGGCCCCTGACAGGGAGTCACTTCTTCTCAAGCACATCGGGTTCGTCTACCACCCCACGAAGGAGACGTGTCTGAGCGGACAGAGCTGCGTTGACATGAATGTCGAGCAGGTACTGGCTAACAGGCTAGTTCAGCTGGACCATGGTCGCTCTAATCTCTACTATAACAGTGCCAACATTGATAAAGTCAATTTGTGTCTCTTGGGAAGGGAGGGTCTCGCACAAGAACTTGCAAATGAAATCCGAGCCCAGTCCACAGACGACGAGTACACCCTGGATGGGAAAATCTATGAACTGGAGCTTCTGCCTGTTGATGTCAACTCAACCTTGCTCTTTAGTCATACGTGGGCGTCGACCTTCAAACCTCACGGAATCTTCTGTGTCTTCAGCTCCATAGAGTCGCTAAATTGTATTGGTGACTGCGTAGGGAGAATCAGGGCAGAGATTGCacagaacaggagggagagatacGCTCCGCCATTGCCATTCATTCTAATCCTAGCAAACCAGAGAGACAGCGTTTGCAAAAATATGCCTATATTAAGGCATCAGGGCCAACAGCTTGCAAATAAGCTACAGTGCACCTTTGTAGATATACCTTCTGCTACCTTTCCACGGAAGTTTAACGAGTTCCAAATTAAACAGGCTCTCAGAGGAGTATTAGAAGGACTAAAGCACAACTTTGATGTGATGAGCCCTCTGCCGTCCATCAAAGACATGTCAGAGACCGACTTGAGGATTGTTATGTGTGCCATGTGTGGGGATCCATTTAGCGTAGACCTCATCCTCTCACCTTTCCTGGATTCACATTCCTGCAGCGCAGGGCAACCTGGCCAAAGTaacactctgatcctcaacaaaATCATTGGCGACAGTCGCAGAAGAATACAGGTTACTGTCCTCTCCTACCACTCCTCCATCGGAATCAGGAAGGACGAGCTCGTCCATGGATACATCCTGGTCTACTCAGCAAAACGCAAGTCCTCCATGGCAATGCTCAGAGCTTTCCTGGCGGAGGTCCAAGATGTCATCCCTGTTCAAATGGTGGCCGTCACAGACAGTCAAGCAGACTTCTTTGAGAATGACCCAATCAAAGACCTCATGACTGAAGGAGAGCACATCGCTACAGAGATAACCGCCAAATTCACagctctctactctctgtctcaGTACCATCGTCAGACGGAAGTCTTCACGCCGTTCTTCAACGAGGTGCTAGAGAAGAAGAGCAGCATCGAGAGCGCCTTCATGTTTGACAGCTCTCGAGACTGCACGGGTGCGAGTGAAGATGTCTTCCCCCAGTCTCCCCACAGCCATTCCCCTGCTTACAGTTACTACCCTGACTCAGAGGACGACACCGAGGCTCCTCCGCCTTACAGCCCCATCGGGGACGACGTGCAGCTTCTTCCAACGCTTAGCGAACGTGGAAAGTGCAGGATCGATCTGGAGGGGAACGAGTACCCTGTCCATAGCACACCTATCGGTGACCAAGAGCGCAACCACAGAGTGCCTCCCCCGGTTAGACCCAAACCTATACTATCCAAGCCCAACGTCAAGAAGTTGGACCCCAATCTCCTGAAGACCATTGAGGCTGGGATGAGGAGCAACAGACGACAACGCAGCCCCATGGCCCAAGGTGAAGACATCGAGGCGTCCGACAATTACGCAGACCCTGTAGACACTCTCCTGAAATCAAAGGGCTTTACCGACAACATCTACGCTGTCCCGGAGGACACCCACAGCAGGACCCTCAAAATGCTCAACTCGTTTGAGGGGCTTCACGTCTCACACGGGGACGAGGAGAACGGCTTCGACCACAAGGCGCAGGCCAGCAGGAGGCCCACCAAGTATAAGCACCGCTCCAAAATACTCTTCAGCAAAACCAAGATGTACCACAGACGTGTCCACTCCGACGTCAGCGATGATGAGTCTGGGCCGGCCatgcagaagaagaagaagggcaggGCCCATCGGGGCAGTGAGGAAGACCCCCTGCTGTCCCCTGCGGACCCCTGGAAGGGAGGGATAGACAACCCTGCCATCACCTCCGATCCAGAGCAGGATGAcatgaagaagaaaaagaagaaaacGCCAAAGACAAAGGAACCTAAAAAGCCAAAATCCAAGCCCACAAAGCCTTTGTACCCTCCCACACGGAGGAATTGGGAGAGCCACTACTTTGGTGTTCCCCTACAGAATCTGGTCACCCCGGACCGGCCAATCCCCTTGTTCATTGAGAAGTGTGTGGACTACATTGAACGCACTGGACTTACAACAGAGGGCCTGTATCGCGTGAGTGGGAACAAGACTGATCAAGACAATATTCAGAAGCAGTTTGATCAAGaCCACAGTATGGACCTGATAGTGATGGATGTGGCTGTGAATGCTGTGGCGGGGGCTCTGAAGGCCTTTTTTTCTGACCTACCTGACCCTCTCATCCCCTACACCCTGCACCCAGAGCTGGTGGAGGCAGCCAAAATTGTGGACCACATAGAAAGACTCCAAGTGCTGAAAGAAATAGTGAGGAAGTTCCCTGCAGTGAACTACGAGGTGTTTAAATACATCATCACTCACCTGAACAGGGTGAGCCAGCAGAGTAAGACCACCCTGATGACAGCCGACAATCTATCCATCTGCTTCTGGCCCACGCTGATGCGTCCCGACTTTGAGAACAAGGACACACTCTCCACCACCAAGCTCAACCAGTCTGTCATCGAGTCCTTCATCCAGCAGAGCCACTACTTCTTCTACAGCGGAGACATCCAGGAGAGCTCCAGCACCGAGagcaccccaccaccccaccactgTCACAGCATGGTGGAGGCCCTGAGGCCCCTGCAGCTGccccctcctcttcagccccagCAGATCCAGCACAGTATGTCCCTGCAGCCTGAACCACTCATATAGACCTAGGTGGGGTAGGGGAAAGGCTGGGCTGGTGGGGGGACATAGGGTGATGtgtcctcctttcccctccctttGGTGTCCCTCTGACTGCAAAACAACAACATTACTAAATGATCAACTTTGTTCTCTGCTCCCCTTTCTGGGTGACTGACTGGATTCAGGGGTGACTGACTGGATTCAGGGGTGACTGACTCATCGAGCTCTCCCCCAGGAACAAAAAACAACATCAAAACAAATGCATTTTTCTTCATTCAGTGCTGTACAGTAATACACAGTAATAAAGATGCTGTATGCCTCCAGCAGACGGACAAAAACATGCGATGCAAAAATGATTTGCTAAATTCTACAACACCTTGCAAAATataaggaaaatatatttatactagttgtgttttgtttttttaaaccctTTATTCATTCAAGTGAACTTGACGTTAGATGAGGCATCATCTGTTATGATACTTCTACCAGCGTAGACATTCTTCTGCTTGTTTCTTTTTGTATGATTTGGCGATGATGATGGATTCTTGTATTTTTACCAGTATGATTTACATTTTTATCTGAACGGTttgagggacagaaagacagtgaACGTTGGCAGGCTTTGTGTCTACCTGCTCCCAACGCCTCGCACTGTTTGGGAGGGAGGGGACTCTACGTGAAAGACTGATGCTGTACTGCACCAGACCGGGACATAAGACAGACTGGCCTCCTATTGGAGCAGAACTCATGCAATTCCTGAAGCTTATGAAGGAAGCATCCCACTACTAGAACCCTACTGGCACATCTCTGTGTTAACTCTGAAATGAACTCATTGCAAAGCAGTCTCGGTCTCTCTTGTTTTGTTTCATTGATGAAATGTCTTGGCGGTCTTGATACTCACCAATAAGAGACCTTTGTTTTCCTCTGTTTGTTCAACTAAATTTGCATGTATTTTTTTGCCTCCAAAAAATgaacaataaaaaaaaagacTGAATTTACAACTCAACATTAACCGCTTTCATTCAGATGATATTTTTTTATCTAACTTGATTGAGGGAAACATTGAAACAGGGCTGAAATTGTATCTATTGTTCATTCATTCTTTTTGCAATGCAAGTTAACTCTTAATATCATATTTTGGTTATCTGTCTAATTGTTTCCCTTAAATAGAGGGGGGGAAATTATATataagtgtatgtgtgtatatatatatatatatatgtgtgtgtgtaagtatatatatatatatatatatatatatatatatatatatatatatatttatcagcagatatgattattattattagcaaaATACCATGGGGTACTGAAATTCTGTATAATCTTGTAAAACCTACTATAATCAGATTTATTTGTGGTATGATGTACAAAAATGTTTGGGCTAGATTAATTGACTGTGTACTTAATGCCATTCATCTTATGAATAAAGAACCATTGCTTCTTTGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2254269 lncRNA upstream 10442 29995972 ~ 29996919 (+) True G1971879
TU2254218 lncRNA upstream 58936 29947592 ~ 29948425 (+) True G1971831
TU2254220 lncRNA upstream 64211 29942143 ~ 29943150 (+) True G1971833
TU2254227 lncRNA upstream 67713 29939360 ~ 29939648 (+) True G1971840
TU2254021 lncRNA upstream 160941 29808077 ~ 29846420 (+) True G1971652
TU2254248 lncRNA downstream 825 30078119 ~ 30078514 (+) True G1971858
TU2254293 lncRNA downstream 7230 30084524 ~ 30086043 (+) True G1971900
TU2254311 lncRNA downstream 27266 30104560 ~ 30112578 (+) True G1971918
TU2254356 lncRNA downstream 93374 30170668 ~ 30177362 (+) False G1971961
TU2254355 lncRNA downstream 97141 30174435 ~ 30178141 (+) False G1971961
XR_002470865.2 mRNA upstream 66191 29940079 ~ 29941170 (+) True LOC110505772
XM_021585197.2 mRNA upstream 100961 29888717 ~ 29906400 (+) True LOC110505767
XM_021585195.2 mRNA upstream 121002 29859648 ~ 29886359 (+) False LOC110505766
XM_021585196.2 mRNA upstream 121353 29860415 ~ 29886008 (+) True LOC110505766
XM_021585193.2 mRNA upstream 482285 29522690 ~ 29525076 (+) True LOC110505764
XM_036962725.1 mRNA downstream 15161 30092455 ~ 30330735 (+) False LOC110505775
XM_036963003.1 mRNA downstream 259241 30336535 ~ 30846679 (+) False LOC110505776
XM_036963004.1 mRNA downstream 259241 30336535 ~ 30846679 (+) False LOC110505776
XM_036963005.1 mRNA downstream 259241 30336535 ~ 30846679 (+) True LOC110505776
XM_021585221.2 mRNA downstream 915005 30992299 ~ 31000393 (+) False LOC110505785
TU2253384 other upstream 528978 29474120 ~ 29478383 (+) True G1971104
TU2252207 other upstream 1593442 28413600 ~ 28413919 (+) True G1970001
TU2250361 other upstream 2919045 27081262 ~ 27088316 (+) True LOC110505721
TU2250362 other upstream 2930221 27072415 ~ 27077140 (+) False LOC110505721
TU2250364 other upstream 2950694 26988839 ~ 27056667 (+) False LOC110505721
TU2254300 other downstream 246219 30323513 ~ 30330437 (+) True LOC110505775
TU2254659 other downstream 553034 30630328 ~ 30632667 (+) True G1972242
TU2254661 other downstream 559760 30637054 ~ 30655039 (+) True G1972244
TU2254663 other downstream 582110 30659404 ~ 30679995 (+) True G1972245
TU2254670 other downstream 617939 30695233 ~ 30696314 (+) True G1972252

Expression Profile