RNA id: TU2254300


Basic Information

Item Value
RNA id TU2254300
length 1360
RNA type TUCP
GC content 0.48
exon number 3
gene id LOC110505775
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30092455 ~ 30330735 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctccctctcccactgccCAAAGCCAGAGTCCAAGCCAAGCGCCTCTGCCCGCCTGCAATGAATACCAAGAAGAACATGGTATTTCTCCTGGAAGTATAGCTGGGAGACAGCTACAGTGCCATAATGAGGCTTCTTATCTTAATCCGTTACCATGTGAAACTCTGATAGACACTGTTGAATGTTTAGGAGATACTGAAATGCTTGAATCTAACATTTCCCCTGTAATGACTAAGATAAGAGTCTCTTGCTCCAGTACAAATCCTTTAAAAGAGGAAGGCAGCCTCTGTCCCCCAATAAGAAAGTGTGATTCGGATGAAAAAGGATCTACTTCACAGTGGATGAAACAGAAGAATGTCAGGAAAGGCTACAGCTCTCTTCAGGAAGTCAAGTCAACTCATAAACAGAAGCAGTCTCCAAGGTCAGTCCAAGGTTGTGGGGAGGTCGGGGGCCTGCGCCCCTGGGGTAGTGGCCCTGTCTCTGACAACTCATCTGCTTCAAAGACTGGAACTGCCAGGCCCCAGagactgtctgggagtgtAGCCTCAGCCACCTCCAAGGCTCAGCTGTGAGAGAGGATGGTCCATGTCTGTGTGCAGTGTCCATCCTGGTGGCCTGTGGCATGGGCTCTCTCCCATGTTCCCCTGGTCAATGGCTCTCTCTAGCCTGCTACTCAAgcttcctcttcttccttctgGCTACTGTAATGCTGAcccctgacctttgacctctcaGTGACCCGCACCATCCTCTGCTCCTCCAATCCGTCCCAGACTGGAACTGAGCTACCACACTGCTCTGCCACCAACCATACAAACCctcaccaaacacacacagacacatacttcTTCTGTCAGTTTGTATGGCATTTCTCACTATCTCACCAGTACTGTAGAACCAGCTGCAGATGTTATAAGCCCAGGTTTTCCTTGTTTGCTGCATCAGTAAGGTCAAATTTGAAGAGGACACATGGAGTGGGCGAGTACTTTGAGAGCTGCTGTTTGGTGATTAGTTCCATCCTGTCTGGACAGAACAGCACTGCTGAGAGTTCCAGAGCGTTCTGAGAGTTCCAGCTCCATGGCAACTTGTGTTAAGAAAGAGAAAGCCAGAGGGAAAAAGAGGGATTGTTTTGGCACTCAACTGATGAAGGAAATGGAAGTTGGACCTATGTCATAAAGAAAGCCAAATGCAAGTAGATCTATCTATGCAACACGTCCCAGGTTGGAAACAGCTGAACAGTGTTGTGTAGTAAGAGATTGATGATGACTGTTGACTTAAATTCAACATCTATCTACTATttcctttttaattttttattccTAAGACATAAAGGCAGGGTACGACTACGGGGGAAGGTTTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2254457 lncRNA upstream 18787 30303496 ~ 30304726 (+) False G1972048
TU2254458 lncRNA upstream 18787 30303496 ~ 30304726 (+) False G1972048
TU2254459 lncRNA upstream 18972 30303496 ~ 30304541 (+) True G1972048
TU2254385 lncRNA upstream 113954 30209193 ~ 30209559 (+) True G1971986
TU2254358 lncRNA upstream 144069 30176510 ~ 30179444 (+) True G1971961
TU2254503 lncRNA downstream 58322 30388759 ~ 30389010 (+) True G1972092
TU2254505 lncRNA downstream 60461 30390898 ~ 30391174 (+) True G1972094
TU2254526 lncRNA downstream 87541 30417978 ~ 30418310 (+) True G1972114
TU2254529 lncRNA downstream 92090 30422527 ~ 30423680 (+) True G1972116
TU2254535 lncRNA downstream 102452 30432889 ~ 30433146 (+) True G1972122
XM_021585205.2 mRNA upstream 246219 30007361 ~ 30077294 (+) False LOC110505773
XM_021585206.2 mRNA upstream 246219 30007361 ~ 30077294 (+) True LOC110505773
XR_002470865.2 mRNA upstream 382343 29940079 ~ 29941170 (+) True LOC110505772
XM_021585197.2 mRNA upstream 417113 29888717 ~ 29906400 (+) True LOC110505767
XM_021585195.2 mRNA upstream 437154 29859648 ~ 29886359 (+) False LOC110505766
XM_036963003.1 mRNA downstream 6098 30336535 ~ 30846679 (+) False LOC110505776
XM_036963004.1 mRNA downstream 6098 30336535 ~ 30846679 (+) False LOC110505776
XM_036963005.1 mRNA downstream 6098 30336535 ~ 30846679 (+) True LOC110505776
XM_021585221.2 mRNA downstream 661862 30992299 ~ 31000393 (+) False LOC110505785
XM_036963008.1 mRNA downstream 661875 30992312 ~ 31000393 (+) True LOC110505785
TU2253384 other upstream 845130 29474120 ~ 29478383 (+) True G1971104
TU2252207 other upstream 1909594 28413600 ~ 28413919 (+) True G1970001
TU2250361 other upstream 3235197 27081262 ~ 27088316 (+) True LOC110505721
TU2250362 other upstream 3246373 27072415 ~ 27077140 (+) False LOC110505721
TU2250364 other upstream 3266846 26988839 ~ 27056667 (+) False LOC110505721
TU2254659 other downstream 299891 30630328 ~ 30632667 (+) True G1972242
TU2254661 other downstream 306617 30637054 ~ 30655039 (+) True G1972244
TU2254663 other downstream 328967 30659404 ~ 30679995 (+) True G1972245
TU2254670 other downstream 364796 30695233 ~ 30696314 (+) True G1972252
TU2255709 other downstream 827081 31157518 ~ 31157736 (+) True G1973126

Expression Profile