RNA id: XM_036963005.1


Basic Information

Item Value
RNA id XM_036963005.1
length 8474
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC110505776
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30336535 ~ 30846679 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCGCTCACACGCGCTAGGAATGGCATTGCTACCAGATCAAACAACAACACCGTCTATGGGAACATTCACAAAGACAGCAACAAGCTTATTTACAAATGTTCTGCTGCACATTAGGGCATAGCAAGTTGAGAGAACCTGTTCCGGAGACACCTCACACAAACAACAGCACATAGAGCACCTGTCAAGAGGAGAGGGTTTCAGTCCTTCAAAGAAAGATAAGAAAACATCACACTTCAATTGTTGGAGACAAACTGAACGCTTCAGCGTTATTTGGAAGTTTTTTAAAGCGAATTTTTCACACTAGCCTATCAACACATCTAGGCATCCTTACAAATAGCATCGGTCCTGTTTTGGAAGTGACGCTGTGCCAACAGTAGTGGAGGGCATAAAATACTTTAACTTTTTGCAATCCTCTAATCTAGGTTTAACGATTTGGTCAGCGACCTACTGCCAACTTCTGTATTGCCTATAATGTAAGTGCAAATAGTTATCCATTTCAAAACTTGATCTTGCATGGTTTTGTTCGTAATAACACGTGGATTGGAATGATGCTGTGCGCACGGAGGATGCAAACCGGTCGGAGATTGTGGCTTTAAGCCTTTTATTTTTCTAATCGTCTAAGCATCTTAAAGAGATAACATTTCAGTAAATTCAAAATAAGGTTATTGGTGAGCTTTTTATGACAAGAAACCGGTTCCAAAGAAGCGCCTGAAATGTGTTAATCTGTTTAACTTTTTAAGTAAAAGTTCCTGACCGCCTGTCACTTCTTATATTTAAACTTCTAGATCACCAGTCATCAATAACCCTAATCAATGTTCCACTTTTACATAGAGAACATGCTAAAGTAAATTAATATATCTTATTTCTGAATAGTTCAGTAACATAAGGCTAGACTTTACAATATTTTACGCAAGAATTACGCGTAATGCTGCAATAGCCTATTTGGCACAACATATTCGAAATTTTATCATTCTAGATAAAGAACAATATTCACTGATCTCCACTGTCTCCAACTACAAATCCGTGCGTAGAGGACGCGTTTCCTGCCCCGCACATCACCGGCATCAATGTCATTGTTAACCTCCTGAAAGCTGTGAAAGCTAGAGAAATCAAGACGTAGAATGGCCGATGAGCTGGTAACCATCACTAATAGGATTGTGATGTGACTTGTTTGGCTGGAGGGACGGCTGCTGCTACTCGTTGAAATATCTCCATAGACTCGGTGCGTGTTCAATCTACCAGAGCTGGGATGATCAGAATCTTCCCGGATTTCAGCGTTCAGGTGACAGCGGCAGGTGGAGGAGCCGGGGGAATGCCATCAGGTCACGCCATGGGGAGAGTCCCCGGTACAACTAACGGGAACCCGCAGAACGTCCAGGGGATCACCTCCTATCAACAAAGCGACCCTTACTGGGAGAGGCCTGCTAATGCCAGCTCCTGTTCTGTCTCTAGGCCCAAGACACTCCACCTTGGAGGAGGGCAACAACATACCTCATCGCCATGGTTGCAGGCTCTGAGGAAGGAGAAGTCCCGGGATGCAGCTCGCTCGCGGCGAGGGAAGGAGAACTTTGAGTTCTACGAGCTGGCTAAGATGCTGCCCCTGCCCGGCGCCATCACCAGCCAGCTGGACAAGGCTTCCATCATCCGCCTCACCATCAGCTACCTTAAGATGAGGGACTTTGCCAACCAGGGGGACCCACCATGGAACCTGCGCATGGAAGGCCCACCGCCCAACACCTCGGTCAAAGCTATAGGAGATCAGCGAAGGAGGACTCCCAGTGCGGTAGCCTCAGAGATCTTCGAGCCACACCTCGGGAGCCACATATTGCAGTCCCTGGATGGATTTGTATTTACACTAAACAAGGAGGCAAGGTTTTTGTACATCTCTGAGACGGTGTCTATATACCTGGGTCTTTCACAGgtGGAGCTGACAGGAAGTAGTGTGTTTGACTATGTCCACCCTGGCGATCATGTGGAGATGGCAGAGCAGCTGGGCATGAAGCTGCCCCCGGGGCGAGGCCTCCTTTCTCAGGGCACCGCCACCGAGGACGGCGCCAGCTCTGCTTCCTCCTCCTCACACGCAGAGACCCCCGAGCCAgTCGAGTCGACCAGCCCCACCCTGCTTCCCCCAGACAACATTCTAGAACGCTCCTTCTTCGTCCGTATGAAGTCCACACTGACCAAGAGAGGTGTCCACATCAAGTCTTCAGGCTATAAGGTGATCCATGTTACAGGCAGGCTGAGGATCCGTATGGCATTGACCCACAGTCGGTTGGTACCCATTCAGATCAtgggcatggtggtggtagcccacgccctccccccccccaccatcaACGAGGTGCGCATAGACTGCCAGATGTTTGTCACCAGGGTCCACATGGACCTCAACATTGTCTACTGTGAGAATAGAATTAGCGACTACATGGACCTGATGCCAGTGGACATCGTAGGGAAGAGGTGCTACCAGTTTATTCACGCAGAGGATGTGGAGGGCATCCGGCACAGCCATTTAGACTtGATAAACAAGGGCCAGTGTGTGACCAAGTACTACCGCTGGATCCAGAAGAACGGTGGGTACATCTGGATCCAGTCCAGTGCCACCATCGCCATCAATGCCAAGAATGGCAATGAAAAGAACATAATCTGGGTCAACTACGTACTCAGTAATCCAGAGTACAAGGACACGCCCATGGACATCGCCCAGCTACCCAACCTTCCAGAGAAAGCCTCAGAGTCTTCAGAGACATCCGACTCTGAGTCCGAGTCCAAGGACAACTCTGACGACAACGAGAACTCCAAGTGGGACAGGAAGGGGAACCAGACTGAGAACACAGAGGACCCGGAAACAGACAGTaaaaagcagcagcagggccAGTCGTCCTCAGAGCAGGAGATGAGGcgtcaggaggagggagacagctcCTCCAACCCAGAGAGCCAGGAGAGCGAGGACGATCTGGAGCCCAGCGACTGTGAGGTGGAGACCAAGGAGGGCAGACTGGGCCGGCTGGAGGACCTGCACATCAAGGTGGAGCACTACGGAGATGGAAACGGAGGGGTGGAGCTGCACGACTCGCCTtcctctgaagaagaggaagatgatgatgacgatgaggaAGATGACGACAGCTTTAAAGACTGTGACAGCGCCACCGAGACTCTCGCCACCCCCGCTGCCAGTAAGCAGCAGAAGCgtaagaagaggaggaaaaagcAGAAATGGGACGGTAGTCGTCCTAAACGTATGTGCCTCTCCTCTGCCACCCCCAGCTCTAACACCTTTGTTGGGGCTGTCCCCCTCCTGCCGCCCCCCTCCCCTGCCAGTGCCTCTGTGCTCAAGATCAAAACGGAAATGTCCGAGCCTATCAACTTCGACAATGACAGCATCATCTGGAACTACCCACCCAACAGAGAGATCTCCAGGAACGAGTCTCCCTACAGCATGACGAAGCCCGTCCCAGCCCACGATACCTTCCCCTCCCCACAGCCTGGTAGTCTGCAGGCCTCCATCCCAGACTCAGTGCTCACTCCCCCAGGAACAGAGGGGGGCAGTGGGGGCGCAGGTACCAGGAAGGGCGTACCCCCCTCTTTCAGCGGTTATAGCAGCGCCCCCTCCTCAGCCTCCAGCGCCGCCAGCCTGGCCCCTCCCTCTGGCTCTGGGTCATCCTCCGACCCCCTGTCCCCGCCCCTCTCGGCCTCGCCGCGCGACAACCAGCAATGTCAGAGCACCCCCACCACGTCCGGCTCCTCCCTGCTGTACACCGGCGACTTGGAGTCCCTGCAGAGGCTGCAGGCCGGGAACGTGGCGCTTCCGCTGGTCCAACGTGTCACCGGCACCCTCGCCACGACCAGCACTGCTGCCTCACGGGTCTACACCACTGGCACCATCCGCTACGCCCCCGCCGACGTCACTCTGGCCATGCAGGCAGGCGCCAACCTGCTGCCCAACAATGTGGCCCACGCTATGAACTTTGTGGATGTCAACGGTAGCCCCAGCTTTGGCATCGACCCCAAGACACCCATGGAGATGCTGTATCATCATGTCCACCGGCTCAACATGGCTGGCCCTTTTGGGGGTACCATGTCCGGCGCCAGTCTCACCCAGATGCCAGCAGCCAATGTATTCACCACGGCAGAGGGACTGTTCTCTACTCTTCCATTCCCTGTCTACAGTAACGGGATACACACCACACAAACTCTGGAGCGCAAAGAAGATTAGAGCAAAACGCCAAGACCATATTACTGTGTTCAACTGTCAAAGACTCTTTGAGGTATAAGACTGTGTTTCAagtggaaaataaatatattcTAGCATTTTGAATTTGAGCAATTGAGCTTGAGTACTAGAAATTAATGGCTCCTTGTCTTtctatccttttctctctctctattgactCCCATTCTATCAATCTCTCGTCCTCTTCCTACTCCTCTTACAGTACTATCAATTATATTTTCTCTGATCAAACTAAACTGACTATTGTTAATTGTAAAGAATTCATTTTTGCCTACAGAGAATTCATATTACCGTTGGTCTCCTACTGGAGTCTGGGGTAAACTACTTTTTATTTGAGTTGATTATGTTGCATCTTTATGAAGATGTCTAGTGTATTTAAAGAGTGATGGTGGAAGATATATTTCTATGGAAAGAAACCCTTGGATGGTTTTGCTTCATATCTTGATGTGATCAAGGTTGACTATGACAAAGGGATGTTACTCTGTTTGACATTGTCATAGAAATAACCTTAAGAAATACGTTTTAAGGTTGGATCATAATAAGGGTATAGTAGTTTATTTTATCattcattttgtttattttttatagaaCAGATTTAACTTTCAAATCAAGCATTAAAAAGCAATTTTAGCAGGGTATTATCCTGTGAATAGAATGTTATAAATCCCAGGACTTTGGAACAAGTACAGGTCGGTGTGAGAAACAAGTATTCCCCCGGTTCCATTTCCTTGGttatgtctcaaatggcaccctgttccctatttattgcattacttttgaccagggcccatagggctctggtcaaaagtagtgcactatttagggaataggatgccatttggaatgcactcATCATCTGCAGATCCATGGTGCTACTGTTCCATCAAGTTACTACCCTCCTTCAGGCTGATGTAGGTTCTTCTGTTCCACAGCTCTCTCACAGAGATGAGTGATTGAGTGACAGCTGGGGAGTCAAACCTCTAATCAACATAGTTTCGTGTTCATTACTACTCCCCTCAGTCAAGTTCAAGGGCTCAATCAGATTGGGCCTGAAGCAGGTTATGGAGCAGGTTGattttgtttgtattttttgAAAACTAGATCACTTTCTAGTCTCAGTGTAACAGAGGCTAATTTGCATCATTAACTTGAAAAATGAATGTTTAACTTTGACTGGCTTCTGTCAGTTGTTTTTTCTACTCTACCCTTCCTCTTTCTTTTACATCCTAAACCTCACTACTATCAACGTCAGTCTCCCAAATCCGTTCTTCCATCAGCCATTGTCCGATTCCTGAAATCACATATCAAGGAGATTgtaataaagacatgtgtttcaATCAAAATGGAATATGTTTTTGGAAAAATCACATTCCCTAATTTTTCtctgttgccaaaaaagttatCTCACAGTTTGGTGTTAAGAACACTGTGAttgctgtttaaaaaaatgtaataaaatggaaAAACTGTCACTTCATCTTTTGACAGCCGTCCATCAAGTAATCTATTACTAAGCGTGATAACCGTAAACGTGTACAATGTGTAAGTGTCACTGGCTGTCAGTCTCCATAGCGATTTCAGTGTGTGTTACTATATGCAGTGTTACTGAGCTGATGTAACTGTTTTGTCCTTTGTCTTCTCTGTGCTTTATCTGTAGTCTGGGGTTGGACAGGGAACGTGTGtaaccctctccttctcctctgcagtCTTAGTGGACCCGTGGAGGTTAGTGGATTTCGTGTGGTGGCCTTCCaatgtagcgtcaccttttgctgcttCCTTCTGTCTGTATTTCTTTCTGTTTCTGCTGTTGCTTTGCTGTTGTGTAGTCTacagacctctctttctctcagagaTAAAAGACTCTTAACTAGCTCAAAGGTTTAAGGAGCCATTTTTTGCCATTGAGGAATTCTGGGTTTACAGTTTCCAGCTTGCATTTACCTACCCTATGAAAAATTACGACAAAAAGCTAAAGTAGCATTTAGATGTATCTTCTAGACTGGAACCATAAAAGCCTCAGTTGTGAAACATTCCCAGAGTCCCTTGTGCTTCTTGTATGCATTGGGTGTATTTCATTGGTTTCCACCAAACCTGTTGACTTCAAGGACCATGCAACTCACAGGACAAAAAGATGATGGTAGTATTTCAGGACAataaacaattttaaagatttctaaagaaatgaaaataaaaaatatttcgCACTATAAATCTATTTTTATAGATGTTTTGGAAATGCATGTTTACTAAGTTGATTGTTAGTTTACTTGATTTCATTCGGTCCAGCAGCTTTGTCTCAACGTTCAGTGTTTTTTAGTCTGTCCAACAAAGGGAGGGGGAGCCTTTGTCTTTTGAACTGAATCAGGCTACTCCCCTACATCAGGAAACAGTGTCTGTAGTTTCTGTGTAGATGTGTTGTTAATCAAATCCAGGTCATGAAATAAATGTAAGAAAAATAATAAACAATGAACGTTTGGGGTTGGTTGATTGGAATGCTGGAATGGTTGCAGGGGACCTTGGTGTCACCACTTGAGATTGATTCTATCCTAGATGTTAGTGTTTTCTAAGATGAAGCGAAGCGGGATGAGACTGTCGGGTCGGGGGCACAGCTCACTTAAAACAGACACTGTGGACGGACCAGGAAATACACCCATATGTTACAACAGAACAGCAGGATGAGCTGTTTTAATGTCTCTGTGTTGTGTCTAAATGAATTGCTGGTGATTTCAACTTAAACTAATCTCAGCTACTGTCGGATACATAGTGTTTAAAGTTTAAATATGAAAAATGACTTCATTACCTGTGaagactgtgtctgtgtttttaacAATTTCTTGTACAATTATACAGATTATTTTAAGAGAAACCAAGTAGATGAATACTACAGGAGAAGGGGATTCTCTTAGTATCAATGTTAACAGTGTTATAAATTCTAAAtacaaacaaattaaaatattaaAAAGAGAACTATGGTACATTTATTATTTAattagttttattttttatttttgaagaAAAACAACAACTAACTGAAGCTAACTTTGAGTGCCTGgcttattttgtatatattttttttttaaacatttttatttccattttttaataatgctGCAatttcagaaatgtacatactTCATTTTACAACAGGGTTATTTTATACTTTTGTAGGTTTCCATTTGTTCAAATAAACCTGTCATCATCATCCATGGTTGTTTTCTGTCTGTAACACTTTTTTTTACCATCTAACAGGTGCCATATTCATAATAAACTTCTCAAAGATTTGTTAATATCTGGCATACTTTATTTAATGTTCAGCCATGTCAATGAAGGCTCCACACCTCAGTAAGCTGCCtcagtttttctttctttctgcctTTCTTTTCTGATCTTGCTTGAAAAAAGTGATACTGGTCTAATGCTTTTCCTAGTTGGAATCTGTGTACATTGCTGGGACATCCATTCAGGTACTGTATGTTCACACTTAACAATCCTGCCATAATGGTAGCTATGTCAGACCACAGTCTGGGTTCATTCCCCTCCAATCAGAATACTTTGGTCATTATTTAATGTAGTCTGATTGGTCACATCATTAATCAGAGGGCAGCTAGTACTGGTTGTTAGAGTACAGTGATTTAACTCACATTGTCACTTAGATAAAAGCACACACAGTATTATGTTAGCTCACCCATGGATAAAATAACATTACTGTGATCATGTGTGAAATACTTTAACAGGATAAATTAACCGACTATCATCACATGGAACAACACTCACACACGCATCATCTTGGACGGACAATCTTACGATCTTGTCAATATCATTGTGGTATAATACCAGTTTAAAGCGGAAACTGTCTTTCAAACTATGCCCTCTACAATGTTTTGTCTCTCATTTTGTTTGCCCAGTATCATGCATAGAGAGACGTCTAGTGTAAATGCATCGAAAACAATGAGGTCTTAAGAAATGACATAGTTATCTGCAGATACGTTTGATTTGAGTAATGAGTCAACCATTAGACTAAGGCACCAAGCAGaagaaaatgtgtaaaaaaaaaatgtgaacacTTTCCCCAGATATTGCAGACAAGGCCTGTCTAGAAAAAGGATGCCCAAGCCATCAAATGTCTCTCTATTGGTGTTTTTTTAATGAGCATAATCTGTTAATATAATTTATCATAATGTGATAAATGACTAACTACATCTGTAATAAATGCAGTAAATGATATGATCA

Function

GO: NA

KEGG:

id description
K09098 NPAS1_3; neuronal PAS domain-containing protein 1/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2254457 lncRNA upstream 31809 30303496 ~ 30304726 (+) False G1972048
TU2254458 lncRNA upstream 31809 30303496 ~ 30304726 (+) False G1972048
TU2254459 lncRNA upstream 31994 30303496 ~ 30304541 (+) True G1972048
TU2254385 lncRNA upstream 126976 30209193 ~ 30209559 (+) True G1971986
TU2254358 lncRNA upstream 157091 30176510 ~ 30179444 (+) True G1971961
TU2254777 lncRNA downstream 1210 30847889 ~ 30849985 (+) True G1972350
TU2254821 lncRNA downstream 69059 30915738 ~ 30916112 (+) True G1972392
TU2254843 lncRNA downstream 125492 30972171 ~ 30973065 (+) True G1972408
TU2255521 lncRNA downstream 195778 31042457 ~ 31042706 (+) True G1972965
TU2255525 lncRNA downstream 197212 31043891 ~ 31044178 (+) True G1972969
XM_036962725.1 mRNA upstream 5800 30092455 ~ 30330735 (+) False LOC110505775
XM_021585205.2 mRNA upstream 259241 30007361 ~ 30077294 (+) False LOC110505773
XM_021585206.2 mRNA upstream 259241 30007361 ~ 30077294 (+) True LOC110505773
XR_002470865.2 mRNA upstream 395365 29940079 ~ 29941170 (+) True LOC110505772
XM_021585197.2 mRNA upstream 430135 29888717 ~ 29906400 (+) True LOC110505767
XM_021585221.2 mRNA downstream 145620 30992299 ~ 31000393 (+) False LOC110505785
XM_036963008.1 mRNA downstream 145633 30992312 ~ 31000393 (+) True LOC110505785
XM_021585220.2 mRNA downstream 153837 31000516 ~ 31040820 (+) True LOC110505784
XM_036962802.1 mRNA downstream 234000 31080679 ~ 31082541 (+) True LOC118944303
XM_021585223.2 mRNA downstream 256605 31103284 ~ 31109026 (+) True LOC110505788
TU2254300 other upstream 6098 30323513 ~ 30330437 (+) True LOC110505775
TU2253384 other upstream 858152 29474120 ~ 29478383 (+) True G1971104
TU2252207 other upstream 1922616 28413600 ~ 28413919 (+) True G1970001
TU2250361 other upstream 3248219 27081262 ~ 27088316 (+) True LOC110505721
TU2250362 other upstream 3259395 27072415 ~ 27077140 (+) False LOC110505721
TU2255709 other downstream 310839 31157518 ~ 31157736 (+) True G1973126
TU2255776 other downstream 356936 31203615 ~ 31203991 (+) True G1973193
TU2255965 other downstream 540799 31387478 ~ 31387736 (+) True G1973369
TU2256257 other downstream 871845 31718524 ~ 31718968 (+) True G1973635
TU2256301 other downstream 940566 31787245 ~ 31789449 (+) True G1973669

Expression Profile