RNA id: TU2255423


Basic Information

Item Value
RNA id TU2255423
length 1014
lncRNA type sense_over
GC content 0.39
exon number 2
gene id sptssa
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30875080 ~ 30880165 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGAACTAATCGGCGATCATTAAAAAGAAGAGAGAATACGACGTAAAGTTATGGCGTTTGAAGATGTCTGGAAGAAAATCTCCTGGTTGTATTACCAGTATATTCTCGTCACGGCTTTATACATGTTGGAACCTTGGGAGAGAGCAATCTTCAACTCCATCCTGATATCTGTAGCAGGGATGGCTGTGTACACTGGCTACGTGTTCATGCCTCAGCACATCATGGCCATACTACAGTACTTTGAGATGGTTCAATGACACGAGTTGTACCCAAGCCTGGGTGTGCCTGTGACTGCTGTCACCATGGAATTAGAATGAATTCTCATTTTAATTTTATGGCTGTCACCTGGACCTGGAGgacagacggggagagagagaacgaggatcTCATTCCATTTCCTGGAACTATTTTTTTCTGTGCTTGTCATCATGGAAACATGAACAGTGTTCTTGGACAGGGTGGGGGGGGAGTACAGAGAGGAGTCCACTGGCACGTCTGATGTTCTAGGACATTAAACCATTGTTGTCTTACTGAGTTGCTTTGCAGTTTGCACAGCAAATGTAACGGTTTTGTTGTTTCCTATTGCACAGATATACACAGTTATTATTCACTGTACCTTTTTAGAAATCGCTTTTTATGACATTCTAAATCCCTCCTGCAATTGTTATTAGAATTTTTTTTCCCGGGGTGGCATATTTTATCACATATTCGTATATACGATTGTATACATATCTGTAAAACTTTCGATTTGATATGTTGGTTAGCAAAAATGTTATATTTGTTATGAAACTAACTGAGCAGTCTCAGGATGGAAAGCCACGTTTTGGGGGCATTGCTGAAGCTAACTGTGACATTATCTTTTCTTTAATATATGTAACAAAAATGACCAAATGTCTGTATTCTAAAtctcaaacatttttttttattttaaacgtTAATGTTTCTGAAGTGTCATTGCTGTTGACACATGCTCTAAAATAAATCTCTTTCGTGTGGAGAATTTTGAGGCTCCA

Function

GO:

id name namespace
GO:0006665 sphingolipid metabolic process biological_process
GO:0017059 serine C-palmitoyltransferase complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004758 serine C-palmitoyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2255402 lncRNA downstream 64685 30810371 ~ 30810708 (-) True G1972872
TU2255399 lncRNA downstream 69738 30805415 ~ 30805655 (-) True G1972869
TU2255398 lncRNA downstream 70054 30804944 ~ 30805339 (-) True G1972868
TU2255391 lncRNA downstream 78830 30795604 ~ 30796563 (-) False G1972863
TU2255479 lncRNA upstream 87593 30967758 ~ 30968041 (-) True G1972932
TU2255487 lncRNA upstream 116600 30996765 ~ 31028122 (-) True G1972937
TU2255523 lncRNA upstream 162198 31042363 ~ 31042565 (-) True G1972967
TU2255529 lncRNA upstream 165406 31045571 ~ 31045859 (-) True G1972973
TU2255555 lncRNA upstream 184329 31064494 ~ 31064783 (-) True G1972999
XM_021585210.2 mRNA downstream 3370 30857050 ~ 30872023 (-) True LOC110505778
XM_021585211.2 mRNA downstream 4870 30857050 ~ 30870523 (-) False LOC110505778
LOC110504221 mRNA downstream 878714 29993757 ~ 29996679 (-) True LOC110504221
XM_021585204.2 mRNA downstream 895868 29942119 ~ 29979525 (-) True LOC110505770
XM_021585199.2 mRNA downstream 895869 29942119 ~ 29979524 (-) False LOC110505770
XM_021585214.2 mRNA upstream 469 30880634 ~ 30891844 (-) False LOC110505780
XM_021585216.2 mRNA upstream 469 30880634 ~ 30891854 (-) False LOC110505780
XM_021585215.2 mRNA upstream 469 30880634 ~ 30891858 (-) True LOC110505780
XM_021585212.2 mRNA upstream 11825 30891990 ~ 30899754 (-) True LOC110505779
XM_021585217.2 mRNA upstream 28810 30908975 ~ 30912793 (-) True LOC110505781
TU2255376 other downstream 109460 30764956 ~ 30765933 (-) True G1972851
TU2255302 other downstream 191990 30626089 ~ 30683403 (-) False G1972810
TU2255303 other downstream 191990 30628261 ~ 30683403 (-) False G1972810
TU2255304 other downstream 199878 30616588 ~ 30675515 (-) False G1972810
TU2255230 other downstream 367335 30507551 ~ 30508058 (-) True G1972746
TU2256456 other upstream 704375 31584540 ~ 31585046 (-) True G1973793
TU2256505 other upstream 734256 31614421 ~ 31618499 (-) True G1973835
TU2256690 other upstream 1106278 31986443 ~ 31986884 (-) True G1974000
TU2258248 other upstream 2439564 33319729 ~ 33324325 (-) True G1975453
TU2258576 other upstream 2676265 33556430 ~ 33556811 (-) True G1975763

Expression Profile