RNA id: XM_021585217.2


Basic Information

Item Value
RNA id XM_021585217.2
length 1592
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110505781
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30908975 ~ 30912793 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTATCCCTTCGAATCCCACTGCTGATCCCGCCCGCCGCAAGTGCAGTGGCTCATACTCGCGCGCCCCGTACCCCCACCCCGTCAGGACGTTCATTCCCATATCTCTTTACCCCTAAAGATTTCCCCACATAATAGCAAATCTCACAGGACCGACGATCTTACAACATGGCCTCGGGTGTCACTGTCAACGATGAAGTCATCAAGGTCTTCAATGACATGAAGGTCAGGAAGTCATCCTCTACCGAAGATGTAAAAAAGCGTAAAAAGGCTGTGCTGTTTTGCCTCAGCGATGACAAGAAGAAGATCATCGTAGAGGAGGGCAAGTGGATCCTCGTTGGTGACATTGGGGAGTCGGTGGACGATCCATACGCATGTTTCGTCAAGCTTCTACCGCTCAACGATTGCAGATATGGCCTATACGATGCCACATACGAAACAAAAGAATCCAAGAAAGAAGACCTGGTATTCATATTTTGGGCACCTGAGGGTGCGCCCTTGAAAAGCAAGATGATCTATGCTAGCTCTAAAGATGCCATTAAAAAGAAGTTCACAGGTATCAAACACGAATGGCAAGTCAACGGATTAGACGACATCCAGGACCGCGCCACCCTGGCAGACAAGTTGGGTGGAAACGTGGTGGTATCACTCGAAGGGTTACCATTGTAAATGGAAAATACTACGTGCCATCTGGATTCCAGACGCTTTCATCTTAGCAGCTGTATCTATAGCATTTGAATCTAAAGGAATAGCTTTAGGCTTTTTTGGTCTGTATTTTTTCCACACAAtggaagagatggatggagatcTCATTAACATATGCGAAAGCCTACAAGTTATTTTGCCAGAAAACttcaacttctttttttttttttttttttttaccttcaaGGAATGATCACACATCACAGGTTTTTCCAAAACAAATATGAACAGCAACGCCACACTACCTGAGATTAATAACACTCCCACAATAAAAACATTAAGATTAGCACTGTTTTTGCGTTCTTGGCCACTTAAACAATGATGACTAAATGCTCAGTAGCATAGGGAAATGTGAATGCTTTCTATAATGCCTTGACAGTCATATTCACTGCCTAGGTTACAGCTAATGGCAAGTATTTTGCACTCATGAGGTTTTcatatgactgacttatttatTTACAATGTTCTATTTTATCCAATATGTTATTTGACATGGCAAAACACGTAATAGACTATGCATATACTAAGCACTTTGTTTATACACTACAAAAGTTGAGGCAAAAAGGTCAAGAATAACTAAAGAATATCTGTATTTATGTTAACTAGATAGAGATGTTACCAGTTTTCATTCCTTTTATGCATATGGACAAGAACAGATCAGTATTTGACTGTTCAATTGCCGCCTTGCTTTCATTTGAATGTACAGGACACCACAGTAAAAAGGGGGGTTGGTGCTTGCAGTTTTTTTTAACACTAAAATAAAGATATTTCAAATATATCAATAAAGATGGCAATATGTGCATTTGGAGCCTTAAGTGGAACATTGTTTTTGAGATTGGGTGAGGAGGTTGCCACTTTACAATAAAACCTTGTGGCAGATAACAGAAA

Function

GO:

id name namespace
GO:0030042 actin filament depolymerization biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05765 CFL; cofilin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2255424 lncRNA downstream 28810 30875080 ~ 30880165 (-) False sptssa
TU2255425 lncRNA downstream 28810 30875210 ~ 30880165 (-) False sptssa
TU2255423 lncRNA downstream 28810 30875393 ~ 30880165 (-) True sptssa
TU2255402 lncRNA downstream 98267 30810371 ~ 30810708 (-) True G1972872
TU2255399 lncRNA downstream 103320 30805415 ~ 30805655 (-) True G1972869
TU2255479 lncRNA upstream 54965 30967758 ~ 30968041 (-) True G1972932
TU2255487 lncRNA upstream 83972 30996765 ~ 31028122 (-) True G1972937
TU2255523 lncRNA upstream 129570 31042363 ~ 31042565 (-) True G1972967
TU2255529 lncRNA upstream 132778 31045571 ~ 31045859 (-) True G1972973
TU2255555 lncRNA upstream 151701 31064494 ~ 31064783 (-) True G1972999
XM_021585212.2 mRNA downstream 9221 30891990 ~ 30899754 (-) True LOC110505779
XM_021585215.2 mRNA downstream 17117 30880634 ~ 30891858 (-) True LOC110505780
XM_021585216.2 mRNA downstream 17121 30880634 ~ 30891854 (-) False LOC110505780
XM_021585214.2 mRNA downstream 17131 30880634 ~ 30891844 (-) False LOC110505780
NM_001165152.2 mRNA downstream 28822 30875394 ~ 30880153 (-) False sptssa
XM_036962346.1 mRNA upstream 249 30913042 ~ 30985619 (-) False LOC110505782
XM_036962348.1 mRNA upstream 249 30913042 ~ 30985636 (-) False LOC110505782
XM_036962344.1 mRNA upstream 249 30913042 ~ 30985675 (-) False LOC110505782
XM_036962345.1 mRNA upstream 249 30913042 ~ 30985760 (-) False LOC110505782
XM_036962343.1 mRNA upstream 249 30913042 ~ 30985764 (-) False LOC110505782
TU2255376 other downstream 143042 30764956 ~ 30765933 (-) True G1972851
TU2255302 other downstream 225572 30626089 ~ 30683403 (-) False G1972810
TU2255303 other downstream 225572 30628261 ~ 30683403 (-) False G1972810
TU2255304 other downstream 233460 30616588 ~ 30675515 (-) False G1972810
TU2255230 other downstream 400917 30507551 ~ 30508058 (-) True G1972746
TU2256456 other upstream 671747 31584540 ~ 31585046 (-) True G1973793
TU2256505 other upstream 701628 31614421 ~ 31618499 (-) True G1973835
TU2256690 other upstream 1073650 31986443 ~ 31986884 (-) True G1974000
TU2258248 other upstream 2406936 33319729 ~ 33324325 (-) True G1975453
TU2258576 other upstream 2643637 33556430 ~ 33556811 (-) True G1975763

Expression Profile