RNA id: XM_036962346.1


Basic Information

Item Value
RNA id XM_036962346.1
length 5450
RNA type mRNA
GC content 0.51
exon number 26
gene id LOC110505782
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30913042 ~ 30985764 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTAAATCTCTTGAATTCTTCCTCTAGTATGCGAAAATGTTCTCGGGTGGTTTAAACATCGAGCTTTTTAATTGCTAATATCAGACAGGTTCCCATTCATTGAGCACATTTTCATAGGACAAATCGGAGACGAAGATAAAGAAAGATGCCGCTTCTCCACAGAAAGCCGTTTGTCAGACAGAAGCCCCCAGCGGACCTCAAACCAGATGAAGAAGTGTTTCTTTGCAAAGTCACACATGAAATCTTCAGGACATACGATGACTTCTTTGAGAGGACCATCCTATGCAACAGCCTAGTGTGGAGCTGTGCGGTGACGGGCAAGCCTGGCCTGACCTacctggaagctctggactgtgagaAGAGAGGTCGTCAGAGCCTCCAGAGCTTCCCCTCAGCCCTGGTGGTCCCCCTGCTGCACCTCACAGCCCTCACATACCGTACCCGGCTCCATGAGATCTGTGATGATGTGTATTCTTACGTCAAGGAGAGGTTCTTCCCTGGGGAGATTGTGGACGTTGTGACCCGCTCCGGTACCAGGCAGCTATGTGAAATCTTGGATGTGCAGTCTCCCCACCATTCCAACGGGCCGGTCAATGGGCATGCCAAACTTCAGATGGAGGGGGACTTCATCATCATCAGTGACAGTGAGGAGGACTCTCCTAAAAGCCCCAAATCAAAGGCCAATGGCAAGACAAAGAAATCTGTCAACCCGTCTGTGTTCAAGTACAAAGTACAGCCCATCAAGGAAGGCAGTGTTCCCATATTCACCAAGGCTGGTCAGATGAGCCGTAAGAAGAACACGTTTTCACGAGACAGACTAAAGCTGCTGCTCAAACAGCATTGTGAACCACAGAACGGAGTCGTTATGATCAAGGCATCAACTGTTGCTAAGTACAAGTTGGCAGAACAGCACTTCTCCCAGTTTTTCCCTGACCAGCCGCCTGTGTTTGTCTTCAGTCCTCCTCCTAAAGGGCGGAGCAGGCCCAAGAATGATTCTTCTCCTCGAGAGGCAGCAGAGGAAAAGCTTCGTCTGATGCAGCAGAAAGAGGAGATGATAGCTATGGCACATGAAAAGGCCAATCGGGAGAGGGAAGATGACCTGGGGGCcaaaaagaaagagaaggaggacaAAGAAAAGAAGAGGGAAGAGATGAAAAAGATGTTTGAAGAGGAGAAGCAGAGGAGGAAAGACGAGAAAGAACGTATGAAAGTGGAAAAGGAAAAAgagagagagaagctgaaggaggagaagaagaaataTGCAGAGAGACTAAAGATCTGGAGCAAACCCAGAGAAGACATGGAGTGTGACGACCTGAAGGATCTCCCAGCCCCAGTGCCGGTGGAGACCCGTCTGCCTGCAGAGCTGTTCGGAGATGCTCTCATGGTGCTGGAGTTCCTCAAAGCCTTCGGAGAGCTCTTTGACCTCAAGGACGAGTTCCCAGAAGGCCTCACACTCGaggTTCTGGAGGAGGCCCTGGTGGGGTCGGACCCCGAGGGGCCACTTTGTGAGCTGCTCTTCTTCTTCCTGTCGGCCATCTTCCAGGCCCTGgctgaggagcaggaggaggtggCCCGCGACCAGGTGGCTGAGGTTGACGCCAAAGATCTGAGTGAGGCTCTGGATGATGATGCGGACCCCACCCAGTCTGCCATCAGTGCTGTGGCTTCCCTGGCTGCTGCCTGGCCTCAGCTCTACCAAGGCTGCAGTCTGAAGCAGTTGGACCTGGACAGCTGTACTCTGTCAGAGATCCTGAGGCTGCACATCCTGGCATCGGGGGCCGACTGCAACTCTGCCAACGCCAAGTTCCGCTACCAGAAACGTGGAGGATTCGGCTCTACAGACGACCCCTGTGTTGAGCTAAGGCTGGCCAACCCTGGGTTGCTCAAGAGGCTGTCCTGCACTGCTGTCTACGACCTGctgccagGTGAGAAGCTGAAGATCCTCCATGCGTTGTGTGGTAAGCTGCTGACTCTAGTGTCTACCAGGGACTTCATAGAGGACAGTGCTGACGAGCAGAGACAGGCCAAGCAGGAGCTCAGGGAACTGAAGGCTGAGCAGCAccgcagagagagggaagaggctGCAATCAGAGTAcggaagaggaaggaggagaagttAAAAGAACAGGAGATGAAATTGAAAGAGCTGAAAGAGAAACATGGAAAGCTGATGGAAGGAAGAAATGGCGACATGAAAACTGAAGAGATGAACACCAGCACTGAGAGCCTGAAGGAGGAACATCAGACTGAAGATGAGGAGGAGCAGACGATCAACAGGACTAGGAAGATGATGGGCAGCAATCTCCAGGAGAAGCAGCCTAAAGAGGTGAGCGCTGAGCAGCAGCCGAGAGAGAAGGATCTCCTGGAGCGCATCCAGAAGGTTGCAGCCTGCACTTATATCCTCCCCCTGGGGCGTGACCGTCTATACCGTCGTTACTGGCTCTTCCCCTCCACATCTGCCCTCTTTGTGGAAGAGGACTATTTCGGCCTGACTGAGGACATGCTGGATCCCCAGGAACCGACCTCTGAACAGGAGCCAGCCACGGCTGAGGAGATGGAGGTGTCTCAGAACGAGGCCGGACAACCAGAGGACCTCTCCCAGACAGGCTCTACCCCAGTCCCTGACTCCAAACCCATCATCCCAGCCCCCGTCCAGAGCAGCTCTGCTCCCCCAGTGAATCGTCCTAACCACTGGGCCTTCTACAGCAGTCCCCAGGAGGTGGAGGCACTGATCGAGGCCCTGAATCCACGGGGTCACAGGGAGAGCACCCTGAAGGAGGTCCTGGTGCAGGAGAAGGAACGTATTGCACAGCTCTTCTGTACAGCAACCGCTGACCGCTACCACCAGACAGataTTAAACCAGAGGCTGGTGTTAACAAAGCTGTCTCAGCCAAGTCCAAGGCTGCTTCTGCTCTTCTCCCAGAGGGCACAGCGGCTCCTGCTGAGGACTTCATGGGCAACAGGCTGAGAGATCTGCTGCTAGATATAGAGGACCGCATCTACCAGGGTACACTGGGACAAGTCAAGGTGATGGAGAGGAGTGTATGGAGGAAAGCACTGGAGGAAGGCCACTATGAACTACTGACCCCTGAGCTGAAGGAGAATGGTGTCACTAAAAGAGAGAACTGTGACGTGGAGAACATGGAAATACATTACTTGAAAAAAGACAGGTTACAGGTGTCATTGTTCAGGCTACAGGAACTGAAGGGGGATAGTATGAGCACAACGTCCACCAGCCCCAACACCCCTCAGATGGTCAACAACACTGTCCACTACCTGGCTCAGGCCCTGGCCCACATTCAACAGGGAATTGAGAGAAAGTTCCTCAAGGCTCCACTAGGCGATGAAGACTCTAAAAGGGACCAGAAGgcaaagaagaaggagaagaaagatGAGGATCAACACAGTGAAGacggtAGTGACAGTGGTCGGTTGGTGAAGACGGTCCAGGAGCGTTGGAGGGAGTCTCTGCTGGGTTGTTCCAGCATGTCCCaggtcttcctccacctctccaccctgGAGCGCAGTGTCATTTGGGCCAAGTCCCTGCTCAACGCCCGCTGTAAGGTCTGTCGTAGGAAGGGAGATGCAGAGAACATGCTGCTGTGTGACTGCTGCGACCGAGGACACCACATCCACTGTGTCCGCCCCAAACTCAAGGCCGTCCCAGAAGGGGACTGGTTCTGCCCGGAGTGCCGTCCCAAACAGCGAGCCAACCGCCTCCCCTCCCGCCAACGGTCCTCTGTCAACTCTGAGGAATTGGAGGAAGAAGACTCTGGGGAGGAGACGACGGAGGAGAAGAGtGCCGCTAAAAAGGTCCGGACTGCTGTGAAACCTGCTGTGCCTACTACCAAAGGAAGTCGGTCGAGCAGGACCAACTCAAGTCATTCCACCCCCCGGAGCCAGCAGACCACCCCCAAACAGGCCCCCTCAGCTGGGAAGGGAGCTGCTTCCAGGTCCTCAGGGAATAAGCCCACCCCAGTCTCCAATAAGCCCACCCCAGTCTCCAATAAGCCCACCCCAGTCTCCAACGGCAGACCTCCACCACGGCCAGGCAGCAGAGTCAGCTCCCGGCTCAGTCATGAGATATTGGCAACCAACGGTACCTCCAgcaggccaggcagccagctcactccatctctgtctctggcaGACTCCCGTAAAAGACCAATCTCAGCAGAGGTCTCCCACAAACCCAAGCTGGTCCTGACTCCCTCAGTCTCAGGTTCTTCTTCCAATCGTCGCAGCTCAGGGAGGAACCTAGGAGTCCATGAGCTGTCTGCCTGCGAGCAGCTGACTGTAGAGCTAGTCAGACATGAAGACAGCTGGCCCTTCATGAAACTGGTGTCTAGGACACAGGTTCCAGACTACTTTGACATTATCAAAAAGCCCATTGCGCTGAGCACTATCCGAGAAAAGGTTAACAACTGTGCATATAAAACAGCCACTGCTTACGTTGAGGACGTGGAGCTTATGTTCGCCAACTGTTTACAATACAACCCTCAGCACACAAATGAAGCTAAAGCAGGAACAAGGCTCCAAGCCTTCTTCAACTCAGAGATCTTTAACCTGGGGCTGGCGGACCGGACCACTCCTCCACTGAAGCGGTCCCGGATGTAAAGCCGACTGGCTGAAACTACTTGGTCGTATTCATTAATGCACACCGTAGCAATTTGTTTTTTACCTGGATGTTTTTCAACAAAAAACAATTTCTtcttggacaaattcaggtagtccCTTCCTGTTTCGCTTTTGTTTTCATCCATTTTTTTCTCTAGTGAATACCATAATTCATTGGAAAGTCTGAACATTCCCAAAGCATTGTGCAGTGTAATATCATTCCCTCAAGATAATGCAGGAACAACTAACTCGCTGTGAAAGTATTTGCACTCAATATTTGAAAACAACTCTTTTCTATTCGTATTCACTCAGGGAAAATGAATTGTGGTTGGAAAGAAGTGTTTTTAACAGTGCATTTTTATATTTTGTATCTTGTGAGGATTTCTAGACTTTCTTTGTGCACGTAATTTTCTTTGACCATTTCAGTTCATTTAGATGACTTAAGTATTAACTTTAATATGGACAGTTTTGCATTTGTTCGTTTCACAGTACTGAACAGTAAACTAATTTTGCATGGACTGTTTCAGGTTCCCATCTTTCAGGGAAACACTACACTGGAATCTGATTTACTGTTCCTTATTTCCTATAATTCATTGGTTATTTATTTTAGTTAAGCTAAGAACTTGctttaaattatatttttatagaacatgtttgtttttgtaaAGAATTATTGGCATAGGTTTTAGTTCAAACTATAGAAAACTGTTTTGTGGTAGGGTTTAAATACTGAGTTTTGTCCCCCTAACTTTCTCACCTCTGCTTTTGTATTTGCTATCGTGTATATTTTCTATATGTAAAAATAAATTCACTGTTTTAATATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2255424 lncRNA downstream 32877 30875080 ~ 30880165 (-) False sptssa
TU2255425 lncRNA downstream 32877 30875210 ~ 30880165 (-) False sptssa
TU2255423 lncRNA downstream 32877 30875393 ~ 30880165 (-) True sptssa
TU2255402 lncRNA downstream 102334 30810371 ~ 30810708 (-) True G1972872
TU2255399 lncRNA downstream 107387 30805415 ~ 30805655 (-) True G1972869
TU2255487 lncRNA upstream 11146 30996765 ~ 31028122 (-) True G1972937
TU2255523 lncRNA upstream 56744 31042363 ~ 31042565 (-) True G1972967
TU2255529 lncRNA upstream 59952 31045571 ~ 31045859 (-) True G1972973
TU2255555 lncRNA upstream 78875 31064494 ~ 31064783 (-) True G1972999
TU2255665 lncRNA upstream 121541 31107160 ~ 31108981 (-) True G1973082
XM_021585217.2 mRNA downstream 249 30908975 ~ 30912793 (-) True LOC110505781
XM_021585212.2 mRNA downstream 13288 30891990 ~ 30899754 (-) True LOC110505779
XM_021585215.2 mRNA downstream 21184 30880634 ~ 30891858 (-) True LOC110505780
XM_021585216.2 mRNA downstream 21188 30880634 ~ 30891854 (-) False LOC110505780
XM_021585214.2 mRNA downstream 21198 30880634 ~ 30891844 (-) False LOC110505780
XM_021585219.2 mRNA upstream 1146 30986765 ~ 30992089 (-) True LOC110505783
XM_021585222.2 mRNA upstream 101741 31087360 ~ 31089298 (-) True LOC110505787
XR_002470590.2 mRNA upstream 129249 31114868 ~ 31148068 (-) True LOC110504336
LOC110505792 mRNA upstream 286430 31272049 ~ 31273966 (-) False LOC110505792
XM_021585245.2 mRNA upstream 636423 31622042 ~ 31630448 (-) False LOC110505798
TU2255376 other downstream 147109 30764956 ~ 30765933 (-) True G1972851
TU2255302 other downstream 229639 30626089 ~ 30683403 (-) False G1972810
TU2255303 other downstream 229639 30628261 ~ 30683403 (-) False G1972810
TU2255304 other downstream 237527 30616588 ~ 30675515 (-) False G1972810
TU2255230 other downstream 404984 30507551 ~ 30508058 (-) True G1972746
TU2256456 other upstream 598921 31584540 ~ 31585046 (-) True G1973793
TU2256505 other upstream 628802 31614421 ~ 31618499 (-) True G1973835
TU2256690 other upstream 1000824 31986443 ~ 31986884 (-) True G1974000
TU2258248 other upstream 2334110 33319729 ~ 33324325 (-) True G1975453
TU2258576 other upstream 2570811 33556430 ~ 33556811 (-) True G1975763

Expression Profile