RNA id: XM_021585221.2


Basic Information

Item Value
RNA id XM_021585221.2
length 2237
RNA type mRNA
GC content 0.44
exon number 17
gene id LOC110505785
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 30992299 ~ 31000393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATACAGGGGCTGCAAAGAAGTAAACATAACCCCGGAACTAGATAGGCATTCTGGGATATCTGGTATTGAGATGACGTTCGTTTGGTTGCTTTTCTCAAGCCAGTTGGCAAACTTTAGTTAAGGAAGTCAACAACGGACGTTTGATCACCAATAAGTGTCAGTGAAAGGTGTGGAGACAAGGGGGTTCCCTCAACATTGAAGCCGAAGAGGCCTTATTTCTCAACTGATTTTGTTCAACAAGACCTGCCAACATGGTGTTAGCCGATTTGGGAAGAAAAATAACCTCGGCATTGCGATCACTGAGCAATGCCACCATCATCAATGAGGAGGTATTAAATGCCATGCTGAAAGAAGTGTGTGCTGCCCTCCTGGAAGCTGATGTCAACATCAAGTTGGTAAAGCAGCTCAGAGAAAATGTAAAATCATCCATTGACCTGGAGGAGATGGCCTCTGGGCTGAACAAGAGGAGAATGATCCAGCATTCTGTGTTCAAGGAGCTTGTCAAGCTGGTGGATCCAGGGGTCAAGGCTTGGACACCCACAAAGGGAAAGAACAATGTCATCATGTTTGTGGGTCTTCAGGGCAGTGGGAAAACCACAACCTGTTCCAAGCTGGCGTACTACTACCAAAGAAAAGGGTGGAAAACCTGTTTGATTTGCGCTGACACTTTCAGAGCTGgtgcctTCGATCAGTTGAAGCAAAATGCAACAAAAGCCAGAATTCCATTCTATGGAAGTTACACAGAGATGGACCCTGTCGTCATAGCTGCGGAAGGTGTGGAAAAGTTCAAAAATGAGAGCTTTGAAATAATCATTGTTGATACCAGTGGCCGACACAAGCAAGAAGATTCCCTTTTTGAGGAGATGTTGCAGGTTTCCAATGCAGTGCAACCTGACAACATTGTGTACGTAATGGATGCCTCCATTGGCCAAGCTTGTGAAGCCCAGGCGAAGGCCTTCAAAGACAAAGTAGAAGTTGCGTCCGTCATAGTGACAAAGCTGGATGGTCATGCCAAAGGTGGTGGTGCTCTCAGTGCAGTGGCTGCTACTAAGAGTCCCATCATTTTCATTGGTACTGGAGAACACATTGATGACTTAGAGCCATTTAAGACACAACCCTTCATCAGCAAGCTACTGGGCATGGGAGACATTGAAGGTTTGATAGACAAAGTCAATGAACTCAAGCTGGATGACAACGAGGAGTTAATTGACAAGCTGAAACATGGTCAGTTCACTCTTCGTGACATGTACGAGCAGTTTCAAAACATCATGAAGATGGGACCTTTCGGACAGATCATGGGTATGATCCCAGGTTTCGGAACAGACTTCATGAGCAAAGGCAACGAGCAGGAGTCCATGGCTAGGTTGAAGAAACTCATGACAATTATGGACAGCATGAACGACCAAGAACTTGACAACAAAGACGGTGCAAAGCTCTTCAGCAAGGGGCCGAACCGAATCGCCAGAGTGGCACGCGGTTCAGGGGTTGCCACCAGGGACGTCCAGGAGCTGCTCACCCAGTACACCAAGTTTGCCCAGATGGTGAAGAAGATGGGTGGCATCAAGGGCCTGTTCAAAGGTGGTGATATGTCCAAGAATGTCAACCCCTCTCAGATGGCTAAGTTGAACCAACAGATGGCAAAGATGATGGACCCAAGGGTTCTCCACCATATGGGTGGAATGTCTGGTCTCCAGTCCATGATGAGACAGTTCCAACAGGGTGCAGCTGGCAACGCGAAAGGAATGATGGGATTCAACAATATGTGAACCACTGAGCCTTAACCCGGTTAAATAAAAGGTTGTCATTTGGATTTAGCAAGAAGGAGATGCAAGTTATTTTGCCTCTAATATAATTAATTACAATGTTTGTGTATAAAATTATGCAGAGGCTTATTTACTTATCAGGATAAATCAAAAGAAGTTCTGTGATTTTTACACTAATTGTAAAATAGGCACAAAAGATGCATAAATGATGGGATTATGAAGCTTGTCCTCAGttatgttcattaggcaccaaacagaagaaaatagaCTTCAATCCGGAGTCACTattggacttgtccaataagataCCCTAATTTGTGTTTTTAATTGCAAAACAACTTAAAATGTTTTCCGGTGTACCCTAATGAACCCAACCAAGATTTGGAGATGTTGTAAAGGATATGCTGAAATTAGTtggacattttttgttgttgtcataatGTAATAAAATTTGTATTGCAATGTTTTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2254843 lncRNA upstream 19234 30972171 ~ 30973065 (+) True G1972408
TU2254821 lncRNA upstream 76187 30915738 ~ 30916112 (+) True G1972392
TU2254777 lncRNA upstream 142314 30847889 ~ 30849985 (+) True G1972350
TU2254768 lncRNA upstream 164385 30827404 ~ 30827914 (+) True G1972341
TU2254766 lncRNA upstream 166856 30825225 ~ 30825443 (+) True G1972339
TU2255521 lncRNA downstream 42064 31042457 ~ 31042706 (+) True G1972965
TU2255525 lncRNA downstream 43498 31043891 ~ 31044178 (+) True G1972969
TU2255526 lncRNA downstream 43976 31044369 ~ 31044625 (+) True G1972970
TU2255541 lncRNA downstream 55120 31055513 ~ 31055926 (+) True G1972985
TU2255690 lncRNA downstream 148974 31149367 ~ 31149567 (+) True G1973107
XM_036963003.1 mRNA upstream 145620 30336535 ~ 30846679 (+) False LOC110505776
XM_036963004.1 mRNA upstream 145620 30336535 ~ 30846679 (+) False LOC110505776
XM_036963005.1 mRNA upstream 145620 30336535 ~ 30846679 (+) True LOC110505776
XM_036962725.1 mRNA upstream 661564 30092455 ~ 30330735 (+) False LOC110505775
XM_021585205.2 mRNA upstream 915005 30007361 ~ 30077294 (+) False LOC110505773
XM_021585220.2 mRNA downstream 123 31000516 ~ 31040820 (+) True LOC110505784
XM_036962802.1 mRNA downstream 80286 31080679 ~ 31082541 (+) True LOC118944303
XM_021585223.2 mRNA downstream 102891 31103284 ~ 31109026 (+) True LOC110505788
XM_021585224.2 mRNA downstream 214430 31214823 ~ 31220599 (+) False LOC110505789
XM_021585226.2 mRNA downstream 214430 31214823 ~ 31220599 (+) True LOC110505789
TU2254670 other upstream 295985 30695233 ~ 30696314 (+) True G1972252
TU2254663 other upstream 312304 30659404 ~ 30679995 (+) True G1972245
TU2254661 other upstream 337260 30637054 ~ 30655039 (+) True G1972244
TU2254659 other upstream 359632 30630328 ~ 30632667 (+) True G1972242
TU2254300 other upstream 661862 30323513 ~ 30330437 (+) True LOC110505775
TU2255709 other downstream 157125 31157518 ~ 31157736 (+) True G1973126
TU2255776 other downstream 203222 31203615 ~ 31203991 (+) True G1973193
TU2255965 other downstream 387085 31387478 ~ 31387736 (+) True G1973369
TU2256257 other downstream 718131 31718524 ~ 31718968 (+) True G1973635
TU2256301 other downstream 786852 31787245 ~ 31789449 (+) True G1973669

Expression Profile