RNA id: XM_021585223.2


Basic Information

Item Value
RNA id XM_021585223.2
length 2381
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110505788
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31103284 ~ 31109026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCCTGTGTGTTTGGTAGTGGTATTCGAGCGAGCGTTGTCATAGTTTTCCGTTGTTTGTAGctagtgcagtaatacccacaagGAAAGGGTTACGACTCATTTGTGTCCCAAAAATTAGATGCAAGCTTTGAAGTGGGAGCGGTGTGTCCAATCGAAATGAGTAAATTCAATGTGGATTTACCTCACTATATCGCTATtagattagctagctagctgacactCCCTTGCCTAGGCTGGTGAAACGGCCTCCCTCTGAAGGCCTCTTCTTTGGTTCTTCTTTGACTTTGGTAGCTAACTCAGCTGTCAATCACCCTCCTGCAACATCCAGCCAATTACAGCACACCATTTCCTAGGATACATTTTCCCAAAACTTCAATCTGAGGAACTGCATGTTTACGATTTGTGGATTTCTACCATAATGTTGGGAACAGTGAAAATGGAAGGTCACGAAACACCAGATTGGAGCAGCTATTACAACGACGCACAAGAGGTATATTCACCCATGGCAAACAGCGGCATGAATGCAGGACTGGGTTCCATGAATAGTATGAACAGTTACATGAGTATGTCTACCAGTGGAAATATGACCTCCGGTTCTTTCAACATGTCCTACGCGAACCCCGGCCTGGGAGCCGGAATAAGCCCCGGTACAATGGCAGGGATGCCTCCGAGCACGTCCATGAATGGAATGTGCGGCGGGGTATCGTCAATGGGCACTGCCCTTAGCCCCTCGAACATGGGCGCAATGTCGGCTCAGCAGGCTTCCATGAACGCTCTGAATCCATACGCCAGCATGAGCCCTACAATGAGCCAAATGTCCTATAATCAGCCCAACCTGAACCGAGCAAGGGACAACAAGTCGTTCAGGAGAAGCTACCCGCACGCAAAGCCTCCGTATTCATACATATCCCTGATAACCATGGCCATTCAGCAAGCACCAAGCAAGATGCTCACGCTTAGCGAAATCTACCAATGGATAATGGACCTATTTCCATACTACAGACAGAACCAACAGAGGTGGCAGAACTCTATTCGCCATTCCTTGTCTTTTAATGATTGTTTCATCAAAGTGTCTAGATCACCGGATAAACCAGGCAAAGGCTCATACTGGGCCCTGCACCCAGATTCTGGAAATATGTTCGAGAACGGTTGTTATCTCCGCAGACAAAAGCGCTTTAAATGCGAAAATAGAAAGCTATCTTCAAGTAAAGGAGACGGAAGGAAAGACCAGTCTGGTTCTGGGTCACCTTCGAGCGACAACAGCAAGACTGGACATGTGGACCCCAACTCCCTCTCCACCTGCAACCAGTCCTCCAGCCCTCACATAATGGACCGCAGGAGCAGTAGCAGCGCCTCTGAACTAAAGAGCAGCGGGCCACCTCTCCACCCTGTGGCCAGCTCCGTCAcgtccctgtcctctctccctttacctccGCACTCAATGGCGCACGAGTCCCAGCTGCACCTAAAAGGGGATCCCCATTACTCATTCAACCACCCCTTTTCAATAAATAATTTAATGTCATCTTCAGAGCAACAGCACAAACTGGACTTGAAAGCCTACGAGCAAGCTTTGCAATACTCCTCCTACGGCTCAAGTATGTCCTCCAGTCTACCCCTCGGCAGCGCGTCCATGGTAGGCAGAGCCATGGACCCATCCGCAATAGAGGCGTCATACTATCAAGGTGTGTATTCCAGACCGGTCCTCAACACTTCTTAGTATCTTCTCATTTTTATAGTGCTCGACAAAAGGACAAACAGAAAACATTTATCTTATTTTTGCATGCACCTGGTGCATAAGGACTGTTACTTCAATGTATAACAATATGTATGAGTAAAATACAATAGTCCTGTAAAGTGTTTCCAATTGAATGATTGTATATCCAGCTGTAAATCATTGCTAGTGTATTTAAAACAATTTCGAGCTTGTAAAATAATGTTGTATTCCCAAAACTTGTAGTCCCCACAATGAATATGTCCATGTGTTACAATTTGCAtgaatgaaggtcagtcaataaggtCTCGTGGAACGCGTGACGCAGGTGAAGCGCAAAACACCTGTCTGTTACAGATACAGCCTACTTTTTTGAATGGATGTTGTCACTTTACGCATTGCTTTGGTTTCATTTGCTAAATATCTGACAAACATATTTTTTAAGCAATCTTGTAATACAATCTTAAATTCCAAGTGGAAATGAAttataaataaaatgttattctTTATAGGCTACAGCAAAATTCCAGTCTTTTTTGTGGTATTTTTCAAACCAGAAAATGGGTGATTATGTGCAGCTTAATGTCAGCGTTTTGTCTTTCTCTGTTTTTTTGATGTCTCTGCATGTGCTTAACTTATTTCTTGTTCATTTCCAAATAAAACAA

Function

GO: NA

KEGG:

id description
K09387 FOXA1, HNF3A; forkhead box protein A1, hepatocyte nuclear factor 3-alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2255541 lncRNA upstream 47358 31055513 ~ 31055926 (+) True G1972985
TU2255526 lncRNA upstream 58659 31044369 ~ 31044625 (+) True G1972970
TU2255525 lncRNA upstream 59106 31043891 ~ 31044178 (+) True G1972969
TU2255521 lncRNA upstream 60578 31042457 ~ 31042706 (+) True G1972965
TU2254843 lncRNA upstream 130219 30972171 ~ 30973065 (+) True G1972408
TU2255690 lncRNA downstream 40341 31149367 ~ 31149567 (+) True G1973107
TU2255701 lncRNA downstream 44561 31153587 ~ 31153859 (+) True G1973118
TU2255723 lncRNA downstream 56687 31165713 ~ 31165945 (+) True G1973140
TU2255740 lncRNA downstream 67854 31176880 ~ 31177158 (+) True G1973157
TU2255743 lncRNA downstream 69517 31178543 ~ 31178762 (+) True G1973160
XM_036962802.1 mRNA upstream 20743 31080679 ~ 31082541 (+) True LOC118944303
XM_021585220.2 mRNA upstream 62464 31000516 ~ 31040820 (+) True LOC110505784
XM_021585221.2 mRNA upstream 102891 30992299 ~ 31000393 (+) False LOC110505785
XM_036963008.1 mRNA upstream 102891 30992312 ~ 31000393 (+) True LOC110505785
XM_036963004.1 mRNA upstream 256605 30336535 ~ 30846679 (+) False LOC110505776
XM_021585224.2 mRNA downstream 105797 31214823 ~ 31220599 (+) False LOC110505789
XM_021585226.2 mRNA downstream 105797 31214823 ~ 31220599 (+) True LOC110505789
XM_036962213.1 mRNA downstream 112466 31221492 ~ 31271457 (+) False LOC110505790
XM_021585230.2 mRNA downstream 112786 31221812 ~ 31271457 (+) False LOC110505790
XM_021585232.2 mRNA downstream 112989 31222015 ~ 31271457 (+) False LOC110505790
TU2254670 other upstream 406970 30695233 ~ 30696314 (+) True G1972252
TU2254663 other upstream 423289 30659404 ~ 30679995 (+) True G1972245
TU2254661 other upstream 448245 30637054 ~ 30655039 (+) True G1972244
TU2254659 other upstream 470617 30630328 ~ 30632667 (+) True G1972242
TU2254300 other upstream 772847 30323513 ~ 30330437 (+) True LOC110505775
TU2255709 other downstream 48492 31157518 ~ 31157736 (+) True G1973126
TU2255776 other downstream 94589 31203615 ~ 31203991 (+) True G1973193
TU2255965 other downstream 278452 31387478 ~ 31387736 (+) True G1973369
TU2256257 other downstream 609498 31718524 ~ 31718968 (+) True G1973635
TU2256301 other downstream 678219 31787245 ~ 31789449 (+) True G1973669

Expression Profile