Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021585226.2 |
| length | 1142 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 10 |
| gene id | LOC110505789 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048589.1 |
| NCBI id | CM023243.3 |
| chromosome length | 47542702 |
| location | 31214823 ~ 31220599 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0019773 | proteasome core complex, alpha-subunit complex | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004298 | threonine-type endopeptidase activity | molecular_function |
| id | description |
|---|---|
| K02727 | PSMA3; 20S proteasome subunit alpha 7 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU2255780 | lncRNA | upstream | 6726 | 31207882 ~ 31208097 (+) | True | G1973197 |
| TU2255765 | lncRNA | upstream | 22883 | 31191660 ~ 31191940 (+) | True | G1973182 |
| TU2255753 | lncRNA | upstream | 28882 | 31185549 ~ 31185941 (+) | True | G1973170 |
| TU2255743 | lncRNA | upstream | 36061 | 31178543 ~ 31178762 (+) | True | G1973160 |
| TU2255740 | lncRNA | upstream | 37665 | 31176880 ~ 31177158 (+) | True | G1973157 |
| TU2255805 | lncRNA | downstream | 57211 | 31277810 ~ 31278060 (+) | True | G1973219 |
| TU2255803 | lncRNA | downstream | 60860 | 31281459 ~ 31281739 (+) | True | LOC110505794 |
| TU2255815 | lncRNA | downstream | 75570 | 31296169 ~ 31296369 (+) | True | G1973226 |
| TU2255822 | lncRNA | downstream | 85813 | 31306412 ~ 31306667 (+) | True | G1973233 |
| TU2255827 | lncRNA | downstream | 91212 | 31311811 ~ 31312111 (+) | True | G1973238 |
| XM_021585223.2 | mRNA | upstream | 105797 | 31103284 ~ 31109026 (+) | True | LOC110505788 |
| XM_036962802.1 | mRNA | upstream | 132282 | 31080679 ~ 31082541 (+) | True | LOC118944303 |
| XM_021585220.2 | mRNA | upstream | 174003 | 31000516 ~ 31040820 (+) | True | LOC110505784 |
| XM_021585221.2 | mRNA | upstream | 214430 | 30992299 ~ 31000393 (+) | False | LOC110505785 |
| XM_036962213.1 | mRNA | downstream | 893 | 31221492 ~ 31271457 (+) | False | LOC110505790 |
| XM_021585230.2 | mRNA | downstream | 1213 | 31221812 ~ 31271457 (+) | False | LOC110505790 |
| XM_021585232.2 | mRNA | downstream | 1416 | 31222015 ~ 31271457 (+) | False | LOC110505790 |
| XM_021585229.2 | mRNA | downstream | 1418 | 31222017 ~ 31271457 (+) | False | LOC110505790 |
| XM_021585227.2 | mRNA | downstream | 1419 | 31222018 ~ 31271457 (+) | False | LOC110505790 |
| TU2255776 | other | upstream | 10832 | 31203615 ~ 31203991 (+) | True | G1973193 |
| TU2255709 | other | upstream | 57087 | 31157518 ~ 31157736 (+) | True | G1973126 |
| TU2254670 | other | upstream | 518509 | 30695233 ~ 30696314 (+) | True | G1972252 |
| TU2254663 | other | upstream | 534828 | 30659404 ~ 30679995 (+) | True | G1972245 |
| TU2254661 | other | upstream | 559784 | 30637054 ~ 30655039 (+) | True | G1972244 |
| TU2255965 | other | downstream | 166879 | 31387478 ~ 31387736 (+) | True | G1973369 |
| TU2256257 | other | downstream | 497925 | 31718524 ~ 31718968 (+) | True | G1973635 |
| TU2256301 | other | downstream | 566646 | 31787245 ~ 31789449 (+) | True | G1973669 |
| TU2256365 | other | downstream | 659511 | 31880110 ~ 31880820 (+) | True | G1973717 |
| TU2256317 | other | downstream | 673384 | 31893983 ~ 31909469 (+) | False | LOC110505805 |
