RNA id: XM_036962213.1


Basic Information

Item Value
RNA id XM_036962213.1
length 6237
RNA type mRNA
GC content 0.50
exon number 24
gene id LOC110505790
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31221492 ~ 31271457 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGCTAGCACCATCTAAAGACAATCAAAACAAATCGAGCTGGACTCCCTCAAATAGCCTCTACGATGAAGGCAGCGGACGAGCCTGCCTACCTGACCGTGGGGACAGAGGTCAGCGCGAAATACAGAGGTGCCTTCTGTGAGGCAAAAATCAAGACTGTTAAACGGACGGTGAAGGTTAAGgTGATGCTCAAAGGAGACACTACCTCACAAGTTGTTCAAGATGACCAAGTGAAAGGACAGTTGAGGGTGGGCTCCACAGTGGAGGTGAAGAGTGCAGAGGGGATCTGCAGTGAGGCAACCATCAACAAACTTACAGACGCCAGTTGGTACACAGTGGTGTTTGACGATGGAGATGAGAAGACACTCCGCAGGACGTCTCTGTGTCTTAAGGGCGAGAGACATTTTGCTGAGAGCGAGaCGTTGGACCAACTGCCCCTGACCAACCCGGAGCACTTTGGCACCCCCGTCATCGGGAAGAAGGGAAACCGCGGAGGAAGGAGGTCATCTCAGGCTCATGCGAACGATGACAAGGAGTCGTCGTCCAGTGATGACGACAGTGAGGATAGGAGGAGGCTAAATGATGACCTGCTGGGTAAAGTGGCCAGTATTCAATCTGGGACAGACCGGACATCCTGGTACCTGGCCCTGGTGATATCACCCAGCTGCAATGATGACCTGACAGTCAAGAAAGACCAATGTTTAGTGAGATCATTTGCAGACTCCAAATTtCGCACTGTGGCAAGAAAGGAGATCCATGAAGTGAACATGGACAGCCTCTCTAAAGCGGAGTTCTCATCGAGGAACGGGTTGGATGAGGCAGTGCATTTCCTCAAAACCAAGGTGGTCCCTGACAGTTGGAAGATGGACATGAGCGAGATCTTAGAATCCTCCAGCAGTGACGAGGAGGAGGACAAGGAAGGAAAAgatagtgaggaggaggaggaggaggagaaggaggatgacGAGCAGCCTGAGGATGAGGCGGACCCAGAGGAGAGGGATCACTTCCTGCAGCAGTTGTATAAGTTCATGGAGGATCGAGGGACACCAATTAACAAGCCTCCTGTGCTCGGCTACAAGGATCTGAACCTCTTCAAGCTCTTCAGGCTAGTCTACCAGCAGGGGGGCTGTGACAAAATTGAAAGTGGATCTGTGTGGAAACAAATCTACATGGACCTGGGCATTCCCATCCTAAACTCTGCTGCCTCCTACAATGTGAAGACTGCCTACAGAAAgtacctGTATGGCTTTGAGGAGTACTGCCGCTCAGCCTGCATCGTGTTCAGGACCATCCACCACAACGAGGCTCGTCCAGCGCCCCAGTCCTCTCAGTCCCAGACAGAGCAGAAGGCTGCCCAGGTCCCTGAGGTGAAGGTGAAGGACAAAGACAAGGTTGGCAAGGGCCCAACACCACCCGTACAGAATGAGTCTGCTGCAGCCACAGAGGACAAGCCTTCCCAGGAGGAGGCTGAGTCGGGGAGTGAGAGTGACAAAGAGAGCCACAAAGATATCGCCTCTCCCAGGGGGAGGAGACGGTGCACTGTGACCCCAGTCAAAGCTGAGGTGAAGGAGCCTGTCAAGCTGGAGAAGATCAAAGAGCAGGAGCCGAGTGATCTGGGTGTGGGCGAGACCAGCGGAGAGGAGACGGGTGGTCAAAAAGAGAGCAGCAGGTCAGACGGAGGGGACACCCAGGGGAATGGATGCAGCCGACGTCTGGAGGAGTCCGATAAAGAGTCTGAGGACGAAGTGGAGGATGAGGACAGCGAGAGGAGAGTTGGAGAAGGggCTGAGGATGAGGACTCAGAAGACTCTGTGACCGGGACTAAGGTGAAGGTAAAGTACGGCCGAGGGAAGACCCAGAAGATATACGAGGCCAATATCAAGAAAACTGAGAACGATGATGCCGGAGATGTCCTCTACCTGGTACACTACTACGGCTGGAACGTCAGGTATGATGAGTGGGTCAAAGCAGATCGGATCATCTGGCCTGTCGACAAGGGCGgaacaaaaaataaacagaaaaagAAAGTCATGAAcaaagaggatggagagaaggacaaGCAGGGGAAGCTGGGTGGGTTGAGAGGTCGCCCTCTTCTCAGAACCACTCCCCCCAGTGCCAACCGCAGCGTCTCCAAGACCCCCAGCCGTGAGGGGCGctccagcagcaagagcaaatctgacacatcacccctgcccaatGGAGAGGGTACCCCTCGCCGACGCACAAGAAGAACCTCTGGGATGTATGACTCGGACAGGGATGCCAACTCCAATGATGAGTCGGGGAATTCGTCAGAGGACAGTGAGTCAGAGGATTCGCCGGAGAAGAAGCCTGCATGGGCGGAGAGAACGGACCCCGCCACGGCCCgtaaacaggaagaggaggaggacctgagggtggagagaggaagagcagaGGCAGTGGCCGCCGCAGCAgcccaggcagcagcagcagcacagctCCAGCCCCCCAGCAGCCCTAAGGagaaggagcagcagcagcaggaggacaAACTCcctgagagggagcctgagaaagtGGAGGCTGAGGAGCAGCCCCAGACGCCTCCCATGACCCCTGAACCCGACAGACCCAAGGAGGAAGACCCCCCTAACCTGAAATCCCCCAGGCCTAAAGCATCACGTAGAAGTAACGTTAGAGAGCCAGAGAGGAACACCAACAACACTGGCTCTGAGATACCCACCACTCCCAACCACATTGAGACTGAGTCATTCCCCAGCCCATGCCCCCTAAAGAGGCAGGATGAGCCCATGGTGGTCCTTCACTGTCTCCCTGCTGAGCACCTCCCCAGCATGCCCGACCTCCCCATCATGGACTCCGACACAGACTCCGCCCCGGAGGAGGAGATCTGCAGGGAGGAGCGAGGCGTGGCCAAGCGTAAAGCCACCGACCACAGGACGCCGGACAAGAAGGTGCGTCTAGACTGGAGGGAGGATACTGCCAGAATGGCATCGCCGGGCGGGATGCCCCATGACTCGCCGGGCGGGATGCCCCATGACTCGCCGGGCGGGAGGCCCCATGACTCGCCGGGCGGGAGGCCCCATGACTCGCCGGGCGGGAGGCCCCATGACTCGCCGGGCGGGAGGCCCCATGACTCGCCGGGCGGGAGGCCCACGACTCCAGAGCGGAGGCTGGAGTCGGGGGGACTAAAAGAAGAGGAGTGTCTAAAGCCAGCGAAGGGTAAAACAGAGCCGGAGGTTAAAACAGAGATGCCTGCCCTCACTCCGGAGGTGCGGTGTCGAGGTCCAGGAGAGGGAGGTGTTGCAGGAGGTCAGCCCAGGTCAGAGCAGCCAGACTATGGAGCAGAGGAGGAGCTGATGCCCCAGATAGGGCCTGAGGCGCTGGTCTGCCACGAGGTGGATTTGGATGACCTGGATGAGAAGGACAAGACCTCAGCAGAAGACCTCCTAATGATGATGAGCCAAGGGAAGGTCCATGCTCCCCCTCCATCCAATGCCTCCTCCCACCACCCCCAGACCCACAACAACCCTCCTCCATCCTCCGGTGGAGCTGCTCCTCCACAAGTCTTTTCCCCCACCTCGGCCCCTAGCCCTGATGAGTCTATAAGCACCAAGAGTGAGAGCGACGTCACCATCGAGGTTGACAGCGTAGCTGGGGAGTCTCAGGAGGGGCTCGGTGATAATGAGTCGGCCAACTCCAACTGCTTTGAAGCCAACACCAGCTCTAGCAACTCCAGCATGTCACTACAGGAGAGAGACACCAAGGACAGAGGTCAGAAAAGGTTGATGGACTGCAATATGAGTTGTTCTGCAAAGAAGCAGAAGCGCAACCAGAAACGGCCAAGCACAACGTCCAAAATGGAGAAGAATGGAGCAGAGTACAGCAGTGACAGTGAGGACCTGGCTGTTATGGACCCCGCCTGTAAGATGACTCCAGTGAAACACTCAATGTCTAAAGGAAGCCTGAAGTTGGTCTCTCCTAACAGTAAGGAGTTAGAGAAGGACAAGCACAAACACAAGCagtcctccttcccctcccctcgcACATACAAGTGGACCTTCCAGCTCAATGAACTGGACAGCATGACAAGTGCTGAGAGGATTTCCTTCTTACAAGACAAACTACAGGATATAAGGAAGTATTACATGTCACTCAAGTCTGAAGTGGCCTCCATAGACAGGAGGCGGAAGAGGTTAAAGAAGAAGGAAAGAGAAGTGTCCCACACCACAGCTTCAACATCGTCTGGCTCATCAGACACTGGGATGAGCCCCTCCTCCGCCTCACCGACTCAGAACACTGTGGCTGTCGAGTGCAGGTGATGACACGCCTTCTCCCCCACGGTTCCCATTACGACTACCCTTTCCCACCATCCCGCTGCCTCCCTGGAGACACggttgtgtctgaaatggcaccctattccctttaaagtaCAAATCTTTTGACCAGAAGCCAGTGTTAAATGACcagaggccctggtcaaaagtagtccactatagagGGCATAgaggtgccatttcagacatacCCACGTACTGACACACCAGAGCCAGCAGCCAAAAGCACTCGACTGCACCCCCTCTGTCTCCTTtcacccccccccatccctcctaCCGCATCCCATCCACCACTTGGCCACTCCCACTTCTTGCACTTCCCTGCCTTGTAGATATTGTGGTCCACCTACTGTAGTGTTGTCAGGAAATGGATTCTACGTGAGTTGAATGTAAAGGAAACCACAAACCCCAGATACTCCTAGCCAAACCCCTTCACTCTCCATCCTTGAACAGTCCATGGCACTTTTCTTCTTCTTACTCTGTCAGAAACAGATATAACCTCCTCTGGTTCCTCAAACGGGAGCAATCTAGATTCAGTAATGAATCAATGATGTCTATCAGCAGAACCAGACATACACAATGTATGTAATCTACAATGTAAAGGGTCCCTACCCATGTTAATAATGGTCACTTAACCACCATGTTAATAATGGTCACTTAACCACCTTGGACATTGTTTGCAAAAAGGTCAATTATGTTCGCTTGCTCCATCAGAACTGCCAAAGTACACGTGTTACAGCAGATTGCCCTATTTTGGAAAAGTGGGACAAATTCAATTGCAAAAGGGAATGTAGTTTACTGAAAACTGCAGCCATTGTCTTCCATTTATTGCAGTGTGTCATCACAGATTAATTATGAAAACTATTTTTGGGTCTCTTTTTAAGAAAAGTAATAAAAAAATTATTAGAAAAAGGTTTATTACAGTGGAACACAGGAGAATGTTTTCAGTGGACTAATTTCCTTTGCGAGTGTATTGTCTTTTTATATGTAATTGCAGAGTTTTTATTTTAGTATGGAAAATTTCAAAAAGTATATATCACAACAGTGAAGTTATTTAATGAAAGATTTCTAGCCCTGAAATTTTGTGTAAAAAAGGTTTCTTGcattgttaaatatatttattctgTCAGTGGACACATTTTAGTATTTTTTACAATATAGAGACACGAACCTTCCACAGTTTGGACAATGGGAAATTCTGATATTGAAAGAATGTTGTGTGCTCATCTAAAAGCAGACTTTGACTGTGATGTTTCAATTGGGTAGCTACTGTGCAGTACATGTTTCCCCTATTTTCAACAGGGCCCTCAACTTTctcaacattttttttcttccctaGATGGTTTTTGGGGAACACCATAATTTGGTGGCCTTCACTTTGTTTCTTGGTACTTGTATTTGTTATAATTTAAAACATCTATTCTTATTTCGACATGAGTTCTGACCAATAAATAAAAGTTGCTTAAGGAATATGTATGTGAAGCCCAGAGGTTTCTTATGATTGTTTTTGTATATAGAGCTTCCAAAACCATGAATttgaaaaatacatttgacaAACTGTAAAGAATGacatattatttttttatacctcATCTTTGTACTGGTatattaaaaccttttttttatgTAAAGTTGGTAGAAACATTCACGCACACAGACTGACTATATACTGACCCAGTGGGTTTCAGCATTAGTCTGAAACTAACCCTACAGAAGAGTCATCGAAGCATTCAGAACATTGACATTTTTTATGCCTTATAGACTTGTGAAAAACACACAGTACTTCCTTAAAAGCTAAGTTTATCTACAGATTCCTGGATGAAGGAAAGAAGGTATTAAGATTACCTGAGCAAAGTCTTTGTATCTTAATGTAAAATAAGCAGAGCTCTTCATTTCTAATAAAGTTTTTAAATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2255780 lncRNA upstream 13395 31207882 ~ 31208097 (+) True G1973197
TU2255765 lncRNA upstream 29552 31191660 ~ 31191940 (+) True G1973182
TU2255753 lncRNA upstream 35551 31185549 ~ 31185941 (+) True G1973170
TU2255743 lncRNA upstream 42730 31178543 ~ 31178762 (+) True G1973160
TU2255740 lncRNA upstream 44334 31176880 ~ 31177158 (+) True G1973157
TU2255805 lncRNA downstream 6353 31277810 ~ 31278060 (+) True G1973219
TU2255803 lncRNA downstream 10002 31281459 ~ 31281739 (+) True LOC110505794
TU2255815 lncRNA downstream 24712 31296169 ~ 31296369 (+) True G1973226
TU2255822 lncRNA downstream 34955 31306412 ~ 31306667 (+) True G1973233
TU2255827 lncRNA downstream 40354 31311811 ~ 31312111 (+) True G1973238
XM_021585224.2 mRNA upstream 893 31214823 ~ 31220599 (+) False LOC110505789
XM_021585226.2 mRNA upstream 893 31214823 ~ 31220599 (+) True LOC110505789
XM_021585223.2 mRNA upstream 112466 31103284 ~ 31109026 (+) True LOC110505788
XM_036962802.1 mRNA upstream 138951 31080679 ~ 31082541 (+) True LOC118944303
XM_021585220.2 mRNA upstream 180672 31000516 ~ 31040820 (+) True LOC110505784
XR_002470871.2 mRNA downstream 3211 31274668 ~ 31282108 (+) False LOC110505794
XM_021585233.2 mRNA downstream 16445 31287902 ~ 31290986 (+) True LOC110505791
XM_021585234.2 mRNA downstream 175454 31446911 ~ 31459466 (+) True LOC110505795
XM_036963033.1 mRNA downstream 305026 31576483 ~ 31587632 (+) False LOC110505796
XM_021585238.2 mRNA downstream 305738 31577195 ~ 31587632 (+) False LOC110505796
TU2255776 other upstream 17501 31203615 ~ 31203991 (+) True G1973193
TU2255709 other upstream 63756 31157518 ~ 31157736 (+) True G1973126
TU2254670 other upstream 525178 30695233 ~ 30696314 (+) True G1972252
TU2254663 other upstream 541497 30659404 ~ 30679995 (+) True G1972245
TU2254661 other upstream 566453 30637054 ~ 30655039 (+) True G1972244
TU2255965 other downstream 116021 31387478 ~ 31387736 (+) True G1973369
TU2256257 other downstream 447067 31718524 ~ 31718968 (+) True G1973635
TU2256301 other downstream 515788 31787245 ~ 31789449 (+) True G1973669
TU2256365 other downstream 608653 31880110 ~ 31880820 (+) True G1973717
TU2256317 other downstream 622526 31893983 ~ 31909469 (+) False LOC110505805

Expression Profile