RNA id: XR_002470871.2


Basic Information

Item Value
RNA id XR_002470871.2
length 1391
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC110505794
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31274668 ~ 31282108 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcctgctttagtttttgcctgTAAACAAGAATCATGGTAGAATTATTGTCAGATTGGCGAGGGAGagctctgtgtggagtaaaggtggtctggagATTTGTTCgcttctggttgcacatgtgacatgctggtagaaatgaggtaaaactgatgtaaatttgcctgcattaaagtccccggccactaggagcgccgcttctggatgagcattttctggTTTGATTTTGGCCTTATACAGCTctttgagtgcggtcttagtaccAGCAAGTTGCAGAGAACGACTGCATTGTTTGTTTATCTAGCTATCTAACAACTTACAAGGCAAGTATCACGGTCACGTTCATATTACCCACCTTGATGCTGCAGACTCTCCCACTGTGGTTCCAGCAACAGCTTTTCCAGAACCTTCTAGccagtggagggatggagggagtatGAGACCCCAGCTCCTCGCAGGTTAAACCCAAAGCCCACACTCTGGAACACCACTAAACTCCGGAACACCCAGAACACTACACAGCTGCACGGCTCCAGGACACAGAATACATCTCACACAGCGCAAGGAACCTTCTGGAGACCATCCCTAACAACAGCAGCAGCTTGGCAGCCAGAGGTGTGCAGCAGCAGTTTTCTTTGGGTtgccatagcaacacccaccgaTGGCAACCTGCAAACAGTGCAGTCCAGGtaagagggggaaaaaatattgtTTGTCATGTTTTCACAATTTGAAGACATAATTGGCTATCTTTAGTCTATTTGACTATTTCCTCCTCCCAAACAAAAACATGCATCTGTGCCATACCTGGGGCATTGTGCACTTTAAAAAGAACTGTATGATACTTCATAATGTTTAGCCAGTAAATATTTGacttattttatacattgtaaagtttgcacatcccttgacttttttatTGATCAAATAGAGATgtattgtcactggcctacacacaataccccataatgtcaaagtggaatgatgttttttgaaaaatgttgAAATGAATTAAaactgaaaagctgaaatgtcttgagtcaataagtattgaaGCCCTTTGTTCTGGCAAGCCtaaaagttgcatggactctgtgtgccaTTATAGTGTTTTAACATGGTTTTTGAATGAccccctcatctctgtactccacacatgcaattatctgtaaggtctctcagttcagcagtgaatttcaaacacagattcaaccacaaagaccagggaggttttcaaatgTCTCGCAAAGTACGCCACCTGTTGGTAGATGAAGAATAactcagacattgaatatccctttgtgcatgttgaagttattaattacatgtttgatgttgtatcaatacagccagtcactacaaagatacagatgtccttcctaactcagttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2255780 lncRNA upstream 66571 31207882 ~ 31208097 (+) True G1973197
TU2255765 lncRNA upstream 82728 31191660 ~ 31191940 (+) True G1973182
TU2255753 lncRNA upstream 88727 31185549 ~ 31185941 (+) True G1973170
TU2255743 lncRNA upstream 95906 31178543 ~ 31178762 (+) True G1973160
TU2255740 lncRNA upstream 97510 31176880 ~ 31177158 (+) True G1973157
TU2255815 lncRNA downstream 14061 31296169 ~ 31296369 (+) True G1973226
TU2255822 lncRNA downstream 24304 31306412 ~ 31306667 (+) True G1973233
TU2255827 lncRNA downstream 29703 31311811 ~ 31312111 (+) True G1973238
TU2255839 lncRNA downstream 57147 31339255 ~ 31339456 (+) True G1973250
TU2255940 lncRNA downstream 80928 31363036 ~ 31363246 (+) True G1973348
XM_036962213.1 mRNA upstream 3211 31221492 ~ 31271457 (+) False LOC110505790
XM_021585230.2 mRNA upstream 3211 31221812 ~ 31271457 (+) False LOC110505790
XM_021585232.2 mRNA upstream 3211 31222015 ~ 31271457 (+) False LOC110505790
XM_021585229.2 mRNA upstream 3211 31222017 ~ 31271457 (+) False LOC110505790
XM_021585227.2 mRNA upstream 3211 31222018 ~ 31271457 (+) False LOC110505790
XM_021585233.2 mRNA downstream 5794 31287902 ~ 31290986 (+) True LOC110505791
XM_021585234.2 mRNA downstream 164803 31446911 ~ 31459466 (+) True LOC110505795
XM_036963033.1 mRNA downstream 294375 31576483 ~ 31587632 (+) False LOC110505796
XM_021585238.2 mRNA downstream 295087 31577195 ~ 31587632 (+) False LOC110505796
XM_036963034.1 mRNA downstream 295087 31577195 ~ 31587632 (+) False LOC110505796
TU2255776 other upstream 70677 31203615 ~ 31203991 (+) True G1973193
TU2255709 other upstream 116932 31157518 ~ 31157736 (+) True G1973126
TU2254670 other upstream 578354 30695233 ~ 30696314 (+) True G1972252
TU2254663 other upstream 594673 30659404 ~ 30679995 (+) True G1972245
TU2254661 other upstream 619629 30637054 ~ 30655039 (+) True G1972244
TU2255965 other downstream 105370 31387478 ~ 31387736 (+) True G1973369
TU2256257 other downstream 436416 31718524 ~ 31718968 (+) True G1973635
TU2256301 other downstream 505137 31787245 ~ 31789449 (+) True G1973669
TU2256365 other downstream 598002 31880110 ~ 31880820 (+) True G1973717
TU2256317 other downstream 611875 31893983 ~ 31909469 (+) False LOC110505805

Expression Profile