RNA id: XM_021585237.2


Basic Information

Item Value
RNA id XM_021585237.2
length 1495
RNA type mRNA
GC content 0.48
exon number 6
gene id LOC110505796
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31576483 ~ 31587632 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTGCGGGTGTGGTCTCTCAGAAGCGAGACCGGGAAATAAAGGTGTGGCCTTGTGGGGGGAACCCGTTTATATACGCCCTGACACACAGCTTTCCCTGTCTACTGTATCTCTGCCAACTGAACGGAGCTACTAACAGATACAATGGATCTTTCAGATGCTCTGGGTGGTGAACCGGGCTGGCCAAGCCAGAACAACCAGCAGAGTAGTGGGGGCGTGTGGCCTGGTGGGCAACCCAACCAGCCAACATGGCCAGGACAGCCTGGTGGTCAACCGGCTTGGCCTGGACAGCAGCAACCAGGCCAGCCTGGTGGTCAACCGGCTTGGCCTGGACAGCAGCAACCAGGCCAGCCTGGTGGTCAACCGGCTTGGCCTGGACAGCAGCAACCAGGCCAGCCCGCCCCCATGTGGCCTGGACAACAACCAAACCCTTCCCAACCCTCATGGCCCGGACAACCAGGTGGGGGACAGCCCAGTCAGCCGACATGGCCAGGACAGATTAGCCAACCTACTGCACCCGGATGGCCAAGCCCAAGCCCCGGTCCAGGCCCTGCCCAACCAACTGCTCCACAACATAGTTCACTGAAAGTGCCATATGACCTGAACCTGCCAAATGGATGCTACGACAAGATGCTCATTACAATTCGTGGGACAGTTAACCAAAATGCCAAAATGTTCACCATCAATCTAACCAAAGGGAATGACATTGCCATGCACTTCAACCCACGCTTTAATGACCAGGGAAAGAAAACGATTGTGCGGAACAGTCAGATAGGCAATACatggggaaaagaggagagggagcaCAATCACTTCCCCTTCACTCAGGGACAGCCCTTCGAGATGAAGATCATGTGCACTAACAGTGAGTTCAAGGTGGCAGTGAACAGCTCACACATCCTGGAGTTCAAACACCGCATCCGTGATATCCAATCCATCAAACACCTGGTCATCTATAATGATGTCACCCTCACGTCTGTGGAGATTGACAAACTATAAGATCTAGCAGGGTTGGCTtcagccatagaaatagaatgaccaGATTAGCCAAAGTCCCTCGGGTTCTATTTTTATGGTTCCAGTGACCTTCCATCATTGAGCTTGAGTCTCAAGCTTTAACCCAGTAGTACTACCATCATATTCTGTACTTCTACTAAGCTGGTATATTCTCTgtggaaaaatatattttcttagtCTTTTAATAAGAGGAAAAAGTCAACAACTTAACTTACAAATTCATTGGTTTTAAGTCTGAATAGGTACATACATTTTAATGTAAACCACCTATATCCAATGTTATActcaaacatattttttttcattGACTGATATCGCTTCCTCCAGATACAGTATGCGTTTTTGTGATTTctttttaatttttattgttgtatAACCTTTCACACTAGGTGGCACAGTTGAGACTTGAATGTTTTAGAACCACAACAAGCCTAGTATTTGCTGTGGCAAAATAAACATTACCTTGGCTACCTATACC

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
K06831 LGALS3; galectin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2256064 lncRNA upstream 112910 31464005 ~ 31464286 (+) True G1973462
TU2256060 lncRNA upstream 116317 31460601 ~ 31460879 (+) True G1973458
TU2255993 lncRNA upstream 144632 31428447 ~ 31432564 (+) True G1973397
TU2255990 lncRNA upstream 152035 31424802 ~ 31425161 (+) True G1973394
TU2255989 lncRNA upstream 152562 31424335 ~ 31424634 (+) True G1973393
TU2256167 lncRNA downstream 20778 31608410 ~ 31608620 (+) True G1973563
TU2256168 lncRNA downstream 21726 31609358 ~ 31609657 (+) True G1973564
TU2256172 lncRNA downstream 25420 31613052 ~ 31613300 (+) True G1973568
TU2256198 lncRNA downstream 52684 31640316 ~ 31642741 (+) True LOC118944345
TU2256222 lncRNA downstream 85865 31673497 ~ 31675409 (+) True G1973605
XM_021585234.2 mRNA upstream 117730 31446911 ~ 31459466 (+) True LOC110505795
XM_021585233.2 mRNA upstream 286210 31287902 ~ 31290986 (+) True LOC110505791
XR_002470871.2 mRNA upstream 295088 31274668 ~ 31282108 (+) False LOC110505794
XM_021585228.2 mRNA upstream 305739 31222018 ~ 31271457 (+) False LOC110505790
XR_002470872.2 mRNA downstream 2257 31589889 ~ 31612340 (+) False LOC110505797
XM_021585239.2 mRNA downstream 2260 31589892 ~ 31618525 (+) False LOC110505797
XM_021585243.2 mRNA downstream 2751 31590383 ~ 31618525 (+) False LOC110505797
XM_036963032.1 mRNA downstream 7447 31595079 ~ 31618525 (+) False LOC110505797
XM_021585244.2 mRNA downstream 8532 31596164 ~ 31618525 (+) False LOC110505797
TU2255965 other upstream 189460 31387478 ~ 31387736 (+) True G1973369
TU2255776 other upstream 373205 31203615 ~ 31203991 (+) True G1973193
TU2255709 other upstream 419460 31157518 ~ 31157736 (+) True G1973126
TU2254670 other upstream 880882 30695233 ~ 30696314 (+) True G1972252
TU2254663 other upstream 897201 30659404 ~ 30679995 (+) True G1972245
TU2256257 other downstream 130892 31718524 ~ 31718968 (+) True G1973635
TU2256301 other downstream 199613 31787245 ~ 31789449 (+) True G1973669
TU2256365 other downstream 292478 31880110 ~ 31880820 (+) True G1973717
TU2256317 other downstream 306351 31893983 ~ 31909469 (+) False LOC110505805
TU2256321 other downstream 306351 31893983 ~ 31909469 (+) True LOC110505805

Expression Profile