RNA id: XM_021585239.2


Basic Information

Item Value
RNA id XM_021585239.2
length 4669
RNA type mRNA
GC content 0.52
exon number 3
gene id LOC110505797
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31589889 ~ 31618525 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTCATCATTGTTGAAGATGCAAGCACGTCAGAACGCTGAGCGCTATAATATCAAGCAGGGGACGTCGCTCGCTCGCGAATATCTTTTGCAAAACGACTAGCTAGTGTGGGATTGTAAGCAAGAGCGTAGCATCAAATACGGACGAACATTATAACGATTTTACTCCTTATATGATAGTTATGAATACCGTATAATTATAGATACGGTAATAATAAATTATAAGGTCACCGCTGAACACCGAACACTGCGCTGCTTTGCCCAGCAAGTGCTCATAGTAAGGCAGGGGATTGGAGACCTCATCATTTCCGAGTTTTCGCAGCGGCACAGTGTGTTGGGTGGGACCCTGAGCTGTAAACTCCTCAGATTGTGGCCTGCAGACGACCAGGGGGTTGTGGGAGAAGACGGGAGAGAATCGTCCGTTGCAACACCAGTCTCACTGGACTGGAGGGAATGCCTGAGAGATGTGAATCTATGAGTTACTGCAGCGCTACTGCCGCCTCTCACAGGGAACCTAggaaaccaccaccaccacccaaccTGCTGCAGTCAGCCTggagGGTTGCAGCCATGCATCTCAAGCAACACCCCAAACTGCAGAAGAAAGAGATCTACCTGGAGTCCAGTCAAGACAGCCAGAGAGGCCTTCATGTGAGCCAGCAGGGGGTCCTGTCACAGAGGACAGTGTGGGGGGTGCGCCCAGCAGTGGCCCTGATTGGTCCGATAAGCAACGGGCTAGGCCAGGGTACGGCCTGCTACCCCCTCAGTGTCATATCCACCAACACCCTGCAGTGCTGTAGTAATGACAACAGTGGCTCCAACCACCTCAACAACAGTAATAATAACCACGGCGACAGTGGACTGCAGACCTCGAGGCTGAGTGAGTCCGAGGGGGATGTATTCCACAGTAGTGCCACCTGGGCCCAGAGTAAAACCTCCAAGACCACCTCCTGCAACACCCCCCCCTCCCTGCTACTCTCTACCTGCACCACCTCTTCTACAGGCTCTGAGAACCAGGGGGCCTCCTTAAGAATCTCTTAtgaaggggaggacagagagggaccGCTGGAAATCTGGGCTGTCATCAAGCCTGGCAACACCAAGGAGAAGATCGCCATCTTCGCCTCGCCCCAGTGCCGTGGAAGCCTGGTGAACGGTGGCGATGGAGAGGCCGGTGAGGACTTGGTGAGCAGCAGCCCGGTGAGGACCGTGTCTGTGAAGATGAAGAGCTGCTGGGAGGACGAGGGTGGATCTGTGGCCAAGCGCAGGAGGAGGTCAGGGTCTCAGGGGCACCACCAGGACCGAGAGAGACAGTCATCCGGAGCCCTGGAGACACTGAGCCCCACTGAGAACAGCCCTGTAGAGGTGACCCTCTGCCTCAGAGAGAGCCCCAGAGTGCCTGAGTGTGGGGAGGTGGTTGTACGGGtggatggggagcaggtgtgtagGGTAGAGGGTGAGGAGGTGAGTGGGACTGACAAGGCTCTCTCTGTGGTGGAGTTGGTGGCCTTCTTGGAGCAGAGAGCCAGCGACAAGCAGGTGGACTCTAAGCCTGTGTCTCTGCGGAGCTCCACAAGCATTACCTTAACCAGGGGGCTGTCACTGACCCTGGAGCCTCAGCAGCCCAGAGCCCCAGACCAGAACCCCCAGGGGACCGATGAGGCAGAATGTGTAAAGGTGTCAGACATGGTGGCCAAGCTGGAGTCAGAGTGCCTGAAGCACCAGAGTGTTAGAAGGGAAGGGTCCAGATCTGGGGGAGAGCTCTCACGCAACAGCCTCACGCGCAACAACCTCTCACGCAACAACAGCCTCTCGCGCAACAACAGCCTGCGGAGGAGGGTGGGCCGGGTGCTGCTGGCAGGAGCAGATGCCTTCTCCATCTCAGCCCAGCCACCACCACCTCAGTCTCCCACTGGGCCCCACCATGGACTAGAGGAGACGACCAGGGTGCCGCACCGCCACGTTAGTCCCTCTGCTGGCTATCCCTCTGCTGGCTATCCCTCTGCTGGCTATCCCTCTGCTGGCTATCCCTCTGCTGGCTATCCCTCTGCTGGCTATCCCTCTGCTGGCTATCCCTCTGCTGGCTATCCCTCTGCTGGCTATCCCTCTGCTGGCTATCCCTCTGCTGGCTATCCCTCTGCTGGCTATCCCTCTGCAAACACCAGCCACACGGACAAACTAGCTCCCAGCAGCTGCCGTGAAGCTGCCCAGTTGGCTTCCAGCACCTCTGACTCAGCCTCTCCGTCTCGCAGCATGGACTCTGGGTGTGGCGCCTCTGTCGTCAGAGAGCCAGAGGAGCGCTGTGAGGCCCAGGGCCCGGGGCAGCAGAAGAAGAACAGGGCTGTAGAGTCTGGGCAGAACCTGCACTTCCAGCTCCTGTCAGAGCAGGCCAGGTCCAGCAGTACAGAGAGCAGTAGTAAACTACAGTGTGCGGAGCCCCTCCCAGGCATGCTGTTCTTCTCACACACTCTGCCCTCACAGGTGGTACTtgaacacacactcccacacacagtcaatactcccacccacacacacaccccccaggAAATGGAATCCAGCCCTAAACCCACCAGAGACTCAGCAGAACCCTCCAAGATTCAGCCCTGTGACCCTTCTATCACTTCTCTACTCCCTGAACCCATATCGCACAGTGAGAACTGGGCCAAAGAGGAGGACGAGGcggtgagtgagggagaggggagtgatGTTAGCCGGTGTGAGACAATGCCTTTCCCCCTGCGCCGCATGGTGTCTCACGAGTTCCTGGAGATGCGCTTTAAAATCCAGCTGCTTCTGGAACCCCAGCAGTACATGTCCTTCCTGCCTCACCACATCATCATCAAGATCTTCTGCCTGCTGCCCACAGAGAGCCTGGCTGCGCTCAAGTGCACCTGCCACTATTTCAAGTTCATCATGGAGAGCTACGGCGTGCGCCCCGCGGACTCCCGCTGGGTGTGCGACCCCCGCTACAAAGACGATCCCTGCAAGCAGTGTAAAAAGCGGAATGGGCGCGGAGACGTGTCCCTCTGCCGCTGGCACCACAAGCCCTACTGCCAGGCGCTACCCTACGGCCCCGGGTACTGGATGTGTTGCCATGGCTCCCACAAAGACACGCCCGGCTGCAACGTCGGTCTCCATGACAACCGCTGGGTGCCCGCCTTCCATAGTATCAACATGCCAATCTATAAGAAACCCAGGAAGGTCTCTGAGGAGTAGTGGTACAGACAATGGGAGGAGAACTGACTTGACTTCTGTGCACTTCCTTTCTTCTTAGGGCTGATGTCTGTCTGTTGCCATATGTGCATTTATTTGTGGGGAGTTTGAGGGAAATCATGTTGCTGATACTGATGAGGAATCGCTGGATCTCTTCCTTTACCACTTCCCCCTCCtgacccctaacctctgacccctcaggtcctctgagatTGTGAGCACTTTAACCGTGGTCAGAATTCTCAATCCTCAAAGGATTCTGTCAGGGTATTCTATTTACTTGCTTCAATGTTTTGGGTTGAAGCATAAACTCTGGTTCTGATAAGTGTGTGTTGAAGAGAAGAGCTTTAATGAGTATTTGTCTTCAGTGTTGATGCTTAATGTGTCCCTCCTTACCATAGCTCTTTCCTTATGCATCAACCGACCGTTACATTGGAATAGATACTTTAGTCAAGGTAAAGCCTATCAATGTTATGCAGTGTATCCCACCCACAAGTGATTTACTCAGTGTGTGTTATGTTGTCTAAGTGAATACATACATGGCTGCAGGACCTCGGTTTATGCAAAATATGAATCAACCCTATTCCATATCCcggttgcttcccaaatggcactctattccctatataaggcacccacagggctctggtcaaaggtagtgcactatatagggaatagggcgccatttgggtaATGGAATCTATATCCCCACTCCACTATATCAGGCTCCGGGTCAGAGAGGCTTTGTTGTTGGTTTTGGATCTGATTGAAACTAGTTTGTTCTGTGCCGGTTGTGTTTACATTGTACATAGTGCTACAGAGTCCTATATCAAAAACAGGGAGAATAAGAGTGACGAGCAGCACGAGTATCTATGACTTGACTTGAATGCATTTATTAGCTTCAGTTTGGTAAAAAGAAAGGTATTTACCCTGTCATGTGTATATTGCTGAATTATTATTGGGTGTTTTTTTTGCAGTGGGTCCCAGATGTATAACCCAGTCTGTAACCCATATGCTTATTACAGCTCGCAGTTTTTTTTCctctaacatttttttttatgtgtgtTGGAAATGGCACACacttccctatataatgcactacttttgactagggcccataaggctctggtcgaaagtagtgcgtTATTATATAGGGAaaaagagtgccatttgggacgagtTTGTTATTAATATCCCTCTTTTTATAATGCTATAACTTCTTGAAGGGAAACATGGGAAATGTCACCTCAGTGTTTCTGTTCTTTACAATGACTTTAACTGGACATGATCTAAAAGAAAAAGAATCAGGATTGATGACAAATGGGAAAAATAATGGTCTCTAAAAGTAGTTTGCTCccagatatattttttttactttgttgTATATTCCTGCTGTATTCTCTGTAAATGCATTTTACTTCCAATAAAGCGCATTAATTCAGAGGTTTTAACTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2256064 lncRNA upstream 125606 31464005 ~ 31464286 (+) True G1973462
TU2256060 lncRNA upstream 129013 31460601 ~ 31460879 (+) True G1973458
TU2255993 lncRNA upstream 157328 31428447 ~ 31432564 (+) True G1973397
TU2255990 lncRNA upstream 164731 31424802 ~ 31425161 (+) True G1973394
TU2255989 lncRNA upstream 165258 31424335 ~ 31424634 (+) True G1973393
TU2256198 lncRNA downstream 21791 31640316 ~ 31642741 (+) True LOC118944345
TU2256222 lncRNA downstream 54972 31673497 ~ 31675409 (+) True G1973605
TU2256252 lncRNA downstream 94908 31713433 ~ 31715906 (+) False G1973633
TU2256253 lncRNA downstream 94908 31713433 ~ 31715906 (+) True G1973633
TU2256280 lncRNA downstream 113136 31731661 ~ 31733672 (+) True G1973649
XM_036963033.1 mRNA upstream 2260 31576483 ~ 31587632 (+) False LOC110505796
XM_021585238.2 mRNA upstream 2260 31577195 ~ 31587632 (+) False LOC110505796
XM_036963034.1 mRNA upstream 2260 31577195 ~ 31587632 (+) False LOC110505796
XM_021585237.2 mRNA upstream 2260 31577196 ~ 31587632 (+) True LOC110505796
XM_021585234.2 mRNA upstream 130426 31446911 ~ 31459466 (+) True LOC110505795
XR_005039590.1 mRNA downstream 21771 31640296 ~ 31642746 (+) False LOC118944345
trnaa-ugc-181 mRNA downstream 71675 31690200 ~ 31690275 (+) True trnaa-ugc-181
XM_036962789.1 mRNA downstream 188962 31807487 ~ 31910358 (+) False LOC110505805
XM_036962790.1 mRNA downstream 188965 31807490 ~ 31910358 (+) False LOC110505805
XM_036962788.1 mRNA downstream 188966 31807491 ~ 31910358 (+) False LOC110505805
TU2255965 other upstream 202156 31387478 ~ 31387736 (+) True G1973369
TU2255776 other upstream 385901 31203615 ~ 31203991 (+) True G1973193
TU2255709 other upstream 432156 31157518 ~ 31157736 (+) True G1973126
TU2254670 other upstream 893578 30695233 ~ 30696314 (+) True G1972252
TU2254663 other upstream 909897 30659404 ~ 30679995 (+) True G1972245
TU2256257 other downstream 99999 31718524 ~ 31718968 (+) True G1973635
TU2256301 other downstream 168720 31787245 ~ 31789449 (+) True G1973669
TU2256365 other downstream 261585 31880110 ~ 31880820 (+) True G1973717
TU2256317 other downstream 275458 31893983 ~ 31909469 (+) False LOC110505805
TU2256321 other downstream 275458 31893983 ~ 31909469 (+) True LOC110505805

Expression Profile