RNA id: XR_005039590.1


Basic Information

Item Value
RNA id XR_005039590.1
length 1914
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC118944345
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31640296 ~ 31642746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCTCTATGAAACAGTGCCAAATCAAGAGCAACCCCCATCCCTACTTGAGTTCTTCTTCTCCTTCAATATAATGGCGGTTTGCatacaagcgccatgctctaccaactgatccCCTGGATCACTGATGGTGGAGTCAGTGGACGACGCGGAGGGTCTGTATGTCGCAGTGGAGAGATGTCCTCTCTGCAACACCGCCAGGCGCAGGCTGACTTGTGCCCGATGCATCCAGGCAGGGGATTTCGTGTACTTCGACGGTAGAAACCCCGAACTaaatgtctGATGAACCTGCAGGTgcattggtggaagagtggggtaacatctcatagcaagaacgggcaaaatctggtgcagtccatgaggaggagatgcactgcagtacttaatgcagctggagtccacacctgatactgactgttacttttgatattGACCCCCGCTTTGTTCAGGgatacattattccatttctgttagtcacatgtctgtggaaattgttcagtttatgtctcagttgaatctaatgttcatacaaatatttacacatgttaaataaacgcagttgacagtgagaggtcatttctttttttgctgagtttaggacTATCGGTTACTACAACTTGTTCTAAACTGCCTGTTAATACAACTCGTACTGTACTGCCTGTTACTACAACTAGTACTGCCTGTTACTACAACTTGTACTGCCTGTTACTACAACTCATACTGTACTGCCTGTTACTACAACTAGTACTGCCTGTTACTACAATTCGTACTGTACTGCCGGTTACTACAACTAGCACTCCCTGTTACTACAACTAGCACTCCCTGTTACTACAACTAGCACTCCCTGTTACTACAACTAGCACTCCCTGTTACTACAACTAGCACTCCCTGTTACTACAACTAGTACTGCCTGTTACTACAACTAGTACTGCTTGTTACTACAACTCGTACTGTACTGCCTGTTACTACAACTCATACTGTCTGTTACTACAACTAGTACTGCCTGTTACAACAACTAGTACTGCTTGTTACTACAACTCGTACTGTACTGCCTGTTACTACAACTCATACTGTCTGTTACTATAACTAGTACTGCCTGTTACTACAACTAGTACTGTACTGCCTGTTACTACAACTCATACTGTCTGTTACTATAACTAGTACTGCCTGTTACTACAACTAGTACTGTACTGCCTGTTACTACAACTCGTACTGTACTGCCTGTTACTACAACTCATACTGTCTGTTACTACAACTAGTACTGCCTGTTACTACAACTAGTACTGTACTGCCTGTTACTACAACTCATACTGTCTGTTACTACAACTAGTACTGTACTGCCTGTTACTACAACTCGTACTGTACTGCCTGTTACTACAACTCATACTGTCTGTTACTACAACTAGTACTGTACTGCCTGTTACTACAACTAGTACTCCCTGTTACTACAACTAGTACTCCCTGTTACTACAACTAGCACTCCCTGTTACTACAACTAGTACTCCCTGTTACTACAACTAGTACTGCCTGTTACTACAACTAGTACTGCTTGTTACTACAACTCGTACTGTACTGCCTGTTACTACAACTCATACTGTCTGTTACTACAACTAGTACTGCCTGTTACAACAACTAGTACTGCTTGTTACTACAACTCGTACTGTACTGCCTGTTACTACAACTTATAGAGTCTGTTAGGAAGATCACGTAACTTTTTCAGGTATGACATCAAATACAGCTACTTCCAGCTGGTGGAGTCCCTGTCTGGAGCTGTGGGACAGCTTTGGCATCACATTCAATTAGTCTGATAATATACCAGCAAATGTCTGTATCTCAAATGGCATCTTATTCCCTTCGATAGgtaacatcccaaatggcaccctatgtaaATAAAGTGCTCAGTCTGAAAAACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2256172 lncRNA upstream 26996 31613052 ~ 31613300 (+) True G1973568
TU2256168 lncRNA upstream 30639 31609358 ~ 31609657 (+) True G1973564
TU2256167 lncRNA upstream 31676 31608410 ~ 31608620 (+) True G1973563
TU2256064 lncRNA upstream 176010 31464005 ~ 31464286 (+) True G1973462
TU2256060 lncRNA upstream 179417 31460601 ~ 31460879 (+) True G1973458
TU2256222 lncRNA downstream 30751 31673497 ~ 31675409 (+) True G1973605
TU2256252 lncRNA downstream 70687 31713433 ~ 31715906 (+) False G1973633
TU2256253 lncRNA downstream 70687 31713433 ~ 31715906 (+) True G1973633
TU2256280 lncRNA downstream 88915 31731661 ~ 31733672 (+) True G1973649
TU2256277 lncRNA downstream 98097 31740843 ~ 31741517 (+) True G1973646
XM_021585239.2 mRNA upstream 21771 31589892 ~ 31618525 (+) False LOC110505797
XM_021585243.2 mRNA upstream 21771 31590383 ~ 31618525 (+) False LOC110505797
XM_036963032.1 mRNA upstream 21771 31595079 ~ 31618525 (+) False LOC110505797
XM_021585244.2 mRNA upstream 21771 31596164 ~ 31618525 (+) False LOC110505797
XM_021585240.2 mRNA upstream 21771 31600637 ~ 31618525 (+) True LOC110505797
trnaa-ugc-181 mRNA downstream 47454 31690200 ~ 31690275 (+) True trnaa-ugc-181
XM_036962789.1 mRNA downstream 164741 31807487 ~ 31910358 (+) False LOC110505805
XM_036962790.1 mRNA downstream 164744 31807490 ~ 31910358 (+) False LOC110505805
XM_036962788.1 mRNA downstream 164745 31807491 ~ 31910358 (+) False LOC110505805
XM_036962510.1 mRNA downstream 291986 31934732 ~ 31977371 (+) False LOC110504226
TU2255965 other upstream 252560 31387478 ~ 31387736 (+) True G1973369
TU2255776 other upstream 436305 31203615 ~ 31203991 (+) True G1973193
TU2255709 other upstream 482560 31157518 ~ 31157736 (+) True G1973126
TU2254670 other upstream 943982 30695233 ~ 30696314 (+) True G1972252
TU2254663 other upstream 960301 30659404 ~ 30679995 (+) True G1972245
TU2256257 other downstream 75778 31718524 ~ 31718968 (+) True G1973635
TU2256301 other downstream 144499 31787245 ~ 31789449 (+) True G1973669
TU2256365 other downstream 237364 31880110 ~ 31880820 (+) True G1973717
TU2256317 other downstream 251237 31893983 ~ 31909469 (+) False LOC110505805
TU2256321 other downstream 251237 31893983 ~ 31909469 (+) True LOC110505805

Expression Profile