RNA id: TU2256198


Basic Information

Item Value
RNA id TU2256198
length 1665
lncRNA type sense_over
GC content 0.42
exon number 3
gene id LOC118944345
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 31640296 ~ 31642746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATCAAGAGCAACCCCCATCCCTACTTGAGTTCTTCTTCTCCTTCAATATAATGGCGGTTTGCatacaagcgccatgctctaccaactgatccCCTGGATCACTGATGGTGGAGTCAGTGGACGACGCGGAGGGTCTGTATGTCGCAGTGGAGAGATGTCCTCTCTGCAACACCGCCAGGCGCAGGCTGACTTGTGCCCGATGCATCCAGGCAGGGGATTTCGTGTACTTCGACGaaatgtctGATGAACCTGCAGGTgcattggtggaagagtggggtaacatctcatagcaagaacgggcaaaatctggtgcagtccatgaggaggagatgcactgcagtacttaatgcagctggagtccacacctgatactgactgttacttttgatattGACCCCCGCTTTGTTCAGGgatacattattccatttctgttagtcacatgtctgtggaaattgttcagtttatgtctcagttgaatctaatgttcatacaaatatttacacatgttaaataaacgcagttgacagtgagaggtcatttctttttttgctgagtttaggacTATCGGTTACTACAACTTGTTCTAAACTGCCTGTTAATACAACTCGTACTGTACTGCCTGTTACTACAACTAGTACTGCCTGTTACTACAACTAGTACTGCCTGTTACTACAACTAGTACTGCTTGTTACTACAACTCGTACTGTACTGCCTGTTACTACAACTCATACTGTCTGTTACTACAACTAGTACTGCCTGTTACAACAACTAGTACTGCTTGTTACTACAACTCGTACTGTACTGCCTGTTACTACAACTCATACTGTCTGTTACTATAACTAGTACTGCCTGTTACTACAACTAGTACTGTACTGCCTGTTACTACAACTCATACTGTCTGTTACTATAACTAGTACTGCCTGTTACTACAACTAGTACTGTACTGCCTGTTACTACAACTCGTACTGTACTGCCTGTTACTACAACTCATACTGTCTGTTACTACAACTAGTACTGCCTGTTACTACAACTAGTACTGTACTGCCTGTTACTACAACTCATACTGTCTGTTACTACAACTAGTACTGTACTGCCTGTTACTACAACTCGTACTGTACTGCCTGTTACTACAACTCATACTGTCTGTTACTACAACTAGTACTGTACTGCCTGTTACTACAACTAGTACTCCCTGTTACTACAACTAGTACTCCCTGTTACTACAACTAGCACTCCCTGTTACTACAACTAGTACTCCCTGTTACTACAACTAGTACTGCCTGTTACTACAACTAGTACTGCTTGTTACTACAACTCGTACTGTACTGCCTGTTACTACAACTCATACTGTCTGTTACTACAACTAGTACTGCCTGTTACAACAACTAGTACTGCTTGTTACTACAACTCGTACTGTACTGCCTGTTACTACAACTTATAGAGTCTGTTAGGAAGATCACGTAACTTTTTCAGGTATGACATCAAATACAGCTACTTCCAGCTGGTGGAGTCCCTGTCTGGAGCTGTGGGACAGCTTTGGCATCACATTCAATTAGTCTGATAATATACCAGCAAATGTCTGTATCTCAAATGGCATCTTATTCCCTTCGATAGgtaacatcccaaatggcaccctatgtaaATAAAGTGCTCAGTCTGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2256172 lncRNA upstream 27016 31613052 ~ 31613300 (+) True G1973568
TU2256168 lncRNA upstream 30659 31609358 ~ 31609657 (+) True G1973564
TU2256167 lncRNA upstream 31696 31608410 ~ 31608620 (+) True G1973563
TU2256064 lncRNA upstream 176030 31464005 ~ 31464286 (+) True G1973462
TU2256060 lncRNA upstream 179437 31460601 ~ 31460879 (+) True G1973458
TU2256222 lncRNA downstream 30756 31673497 ~ 31675409 (+) True G1973605
TU2256252 lncRNA downstream 70692 31713433 ~ 31715906 (+) False G1973633
TU2256253 lncRNA downstream 70692 31713433 ~ 31715906 (+) True G1973633
TU2256280 lncRNA downstream 88920 31731661 ~ 31733672 (+) True G1973649
TU2256277 lncRNA downstream 98102 31740843 ~ 31741517 (+) True G1973646
XM_021585239.2 mRNA upstream 21791 31589892 ~ 31618525 (+) False LOC110505797
XM_021585243.2 mRNA upstream 21791 31590383 ~ 31618525 (+) False LOC110505797
XM_036963032.1 mRNA upstream 21791 31595079 ~ 31618525 (+) False LOC110505797
XM_021585244.2 mRNA upstream 21791 31596164 ~ 31618525 (+) False LOC110505797
XM_021585240.2 mRNA upstream 21791 31600637 ~ 31618525 (+) True LOC110505797
trnaa-ugc-181 mRNA downstream 47459 31690200 ~ 31690275 (+) True trnaa-ugc-181
XM_036962789.1 mRNA downstream 164746 31807487 ~ 31910358 (+) False LOC110505805
XM_036962790.1 mRNA downstream 164749 31807490 ~ 31910358 (+) False LOC110505805
XM_036962788.1 mRNA downstream 164750 31807491 ~ 31910358 (+) False LOC110505805
XM_036962510.1 mRNA downstream 291991 31934732 ~ 31977371 (+) False LOC110504226
TU2255965 other upstream 252580 31387478 ~ 31387736 (+) True G1973369
TU2255776 other upstream 436325 31203615 ~ 31203991 (+) True G1973193
TU2255709 other upstream 482580 31157518 ~ 31157736 (+) True G1973126
TU2254670 other upstream 944002 30695233 ~ 30696314 (+) True G1972252
TU2254663 other upstream 960321 30659404 ~ 30679995 (+) True G1972245
TU2256257 other downstream 75783 31718524 ~ 31718968 (+) True G1973635
TU2256301 other downstream 144504 31787245 ~ 31789449 (+) True G1973669
TU2256365 other downstream 237369 31880110 ~ 31880820 (+) True G1973717
TU2256317 other downstream 251242 31893983 ~ 31909469 (+) False LOC110505805
TU2256321 other downstream 251242 31893983 ~ 31909469 (+) True LOC110505805

Expression Profile