RNA id: XM_036962225.1


Basic Information

Item Value
RNA id XM_036962225.1
length 7095
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110510947
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 32021272 ~ 32135673 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGAGGCAGCCCTAGccacagagagaccgagagctCGGGGGAAGCAGGACTCACTACTCAATcgtcacactcacacagagaaaggggagaaaaaaAGAGTGCAGGTCTTGATTTATTTAGAAAAGAGGTGGAAGTTCTGTGTGCCCGGTCTACACAGAACCGTACAAGGGGGCAGAGCACTTGGAGTTGAGGAGACTGAAAAGTACCTGCCATTGCATGCTGATGCTCAAGGCTGCACCAACAGAAGTGCCCATCACTTGGTGATACCCAAGTGCCCGAGAAGAAAAATTGGATTCATATTTTGTAAAATTGTATTATCAATTATTGTCATTGTGAATGTTTGcgatttgttattttatttttgtgtttgtttctAAAAGAAGAAATGAAATAAGTTCAGAGACCGGGCAATTGACTGGACTCACAGTGATACCCAGCGCATTCCGAGCTGTCAGCGCGTGCACTGACCATCGCGTTCTGATTCTTGTTCTCTCACAAGGTGGAGGGACACTCGCCAGGGTTTGATCCCAACTGTCACTCACTACATCCGTCAAACATCCAAGGATATTTCCCCACTTCTGAcatctttcttttttctactcGGACATATCacttctctcacacactttttgcCAAATGGTGTGAGTAACCTACAGAGAGAAGCGGTGAAAGAGAACTGAGGGTATAGCACAGGCTATCCACGGTCTCgtcacatacaaacacagaggCAGAGTGGACCGAAGAGGCGAAGCGCAAAAGACACTTTCGCCTCTCGGAGTGAGGGGACCACTAGCCAATAGCTCAAAGCACGATCAACCACCCACCCCGGCCGGCAGTCCGAGCGCAGGAGCCTCGTACTTTTGGAGGTCCCGGGAAAAGTTGAGTGCCGAGCAAGTGTAGGCAATAGGAGGGAAGCGAGCCCATCCTTCAGAGTGCTGGTCCCCGGGCAATGCAAGTGTAAATGCCAGGGCAATGTCCCGTCGCAAGCAGGGGAACCCACAGCACGTGTCACAGAGAGAATTAATAGCACCGGCGGAGGCTGATCATGTGGACGGCGGACTGTCCATGTCTgactccctcaccctccctcaccctcaccccCTGTTGTCCCACCCGGCCCTGCTGGACCCCAGCCTATCAAACAGCCTGGCCATGGGTCTGGTTGACCACGACCTGCTCACCTGTGGCCAGTGTCAGATGAACTTTCCCCTGGGAGACATCCTGCTCTTCATCGAGCACAAGAAGAAGCAGTGCCAGGCCCTACTGCAAGGCCACGGCTGCTACGACAAGATGGCCGCTGACCGCAGCAGCCCCTCCCCGCCccaccagcagcagcagaacCAGGGTCGGCACGGCCACTGTCAGCTGAGGAAAGTGGTGGAACCGGTGGAAATCGGAATCCAGGTGACACCAGAGGACGAGAGGCTGATGGTGACGCCGACCAAAGGAATTTGCCCCAAGCAGGAGAGTGTCCTGGCTGGAGGCCGGGACGAGCCTTCGAGCTACATCTGCACCACGTGTAAGCAGCCCTTTCCCAGTGCCTGGTTCCTCCTGCAGCACGCCCAGAACAGCCATGGCATCCGCATCTACCTGGAGTCCAACCCCTCCAGCTCGTTGCTTACCCCCCGCATCACCATCCCCGGACCGCCCATGGGCCAGGACTCCATCCCCCAGTCCCCCCTCGCCAACTTTCTGGGAGAGAACAACCCCTTCCACCTGTTGAGGATGACTGGGCCCCTGCTCCGGGATCCCCCACCAGGCTTCATGGAGAACCGTGGAGGCCTCCCCAACACGCCGCCCTTCGTCAGCCCCTCACCCCGCCACCACCTGGACCCCCACCGGCTGGAACGCCTTAGTGCCGAGGAAATGGGGCTCATCTCCCAGCACCCCAGTGCCTTTGAGAGGGTGATGCGGCTGACGCCCATGGCCATCGAGGCCCAATCCATGGACTTTTCCAGGCGGCTCAGGGAGCTGGCGGGGAGCAATAACGTGGCCACACCTCCTCTTTCGCCCAGCCGGGCCAACCCTATGCACCGCCTGCTCAACCCCAACCCCTTCCAGCCAAGCCCCAAGTCACCCTTTCTCAGCACCCCGCCCCTGCCGGCCATGCCCCCCAACAGCACCACCCCGCCCCAGACACAGGCCAAGAGCAAGTCATGCGAGTTCTGCGggaagagcttcaagttccagaGCAACCTGGTGGTCCACCGGCGGAGCCACACCGGGGAGAAGCCCTATAAGTGTCAGCTGTGTGACCATGCCTGCTCCCAGGCCAGCAAGCTGAAGAGGCACATgaagacacacatgcacaaatcTGGCTCCATGACAGGGAGGTCTGACGATGGGCTTTCCACCACAAGCTCCCCCGAGCCGGGCACCAGTGAAGTGACTGGAGAAGGCAtgaagaacagagagggagacttCAGGGgtgagggtgaagaggaggaagaggaagaggatgaagaggagatggAGAACGAGAGCAGGCCAGAGTCAAACTTCAGCATGGACAACATGGAGTTCTATCGTAACCGTGAGAACGGCTCCAAGCCGCCGCCAGACGAGAAgaactctctctccctgggtaAGATGGTGGAGAATGTGGGCCTGAACACTATACAGCAGTACAATAACTTGATAGTCGACAATCGTAAAAATCGCATGCCCTTCTCTAAGAAGGGGTCCGACGGGCAGCGGGACACTGGGGATGAGGACTCTGtggtgggagagatggagagggagcatCATCATCACCAGATGGAAAGGGATCACCAAAGGCCCACTGTCAACGGCAGGAACTGTGGCTCCGGCAACTCTTTCTCTAGCCTTTTCCCCCGTAAGCCCACACCCATCACCAGCCCCAGCCTGTCCAACTCCTCCAACAAGAGGATCAAGATTGAGAAGGATCTGGACATGCCCCCGGCGCCCCTCATCCCCTCTGAGAACGTCTACTCCCAGTGGCTGGTGGGATACGCTGCCTCACGACACTTCATCAAAGACCCTTTCCTGGGCTTCACCGACTCCAGACAATCTCCCTTCGGCACATCCTCTGAGCACTCATCTGAGAACGGCAGCCTGCGTTTCTCCACGCCTCCTGGGGACCTCCTGGATGGCGGCCTGTCGGGGCGCAGCGGCACAGCCAGCGGGGGTAGCACCCCTCACCTGGGGGGCATGGGATCCGGCCGGCCCGGCTCCAAGGAGAGCCGACGGAGCGACACCTGCGAGTACTGCGGCAAGGTGTTCAAGAACTGCAGCAACTTGACAGTGCACCGGCGCAGCCACACGGGAGAGAGGCCCTACAAGTGCGAGCTGTGCAACTACGCCTGCGCCCAGAGCTCCAAGCTCACACGCCACATGAAGACCCACGGGCAGATGGTTGTAGGATGGCTAAACCGTCGGGCTAAACTGCGGAGCTTTATAgccagagagagcagggagatcTTAGGGGCTCCCTGTGATGTGTAGTTGAACGCATTCTGAAAGAAGTAGcaactctgacacacacagaaTGCACAGCTGAGTGAGCTTTTTAGGAAAGATTTTTCGGTCTTCAGCAAGCACCAACCTTTGCCCAAATCAGCACTCCTTGTTATTTTGAATAATGTACCCCtgtcttacccccccccccccccttgttcaaACCCCCTTAAGTTGACCTTTGACATCCacgcaaaaatgttttttttgttttgttaaaaatcTGTCATTGAGAAAAAAATAAGAGAAAAACACAAACATATCTTTGCACCATGTTGACCCGTACTATGATTCGCACCAGTTGACCCGTACTATGATTCGTACCAGTTGACCCGTACTATGATTCGTACCAGTTGACCCGTACTATGATTCGTACCAGTTGACCCGTACTATGATTTGCACCAGTTGACCCGTACTATGATTCGTACCAGTTGACCCGTACTATGATTCGTACCAGTTGACCCGTACTATGATTCGTACCAGTTGACCCGTACTATGATTCGTACCAGTTGACTCGTACTATGATTCGTACCAGTTGACCCGTACTATGATTCACACCAGTTGACCCGTACTATGATTCACACCAGTTGACCCGTACTATGATTCACACCAGTTGACCCGTACTATGATTCACACCAGTTGACCCGTACTATGATTCACACCAGTTGACCCGTACTATGATTCACACCAGTTGACCCGTACTATGATTCACACCAGTTGACCCGTACTATGATTTGTCAATCATTTTTTTACAcacaaaaagaaaaagaaaatggaAAATACGGCTTCTGAGCAAGAAATGACTTTGACTGGATTTACTCGGCCTGGGTGAAGGGTTCTATAGTTTGGGATCAGCTGATATTGAAGTGCCAGCGTTGCTATAAGCTTGGCTTTCCCAATACTGGCACTATAAAAATTCAAATTAATTTATTGGGACACTTTTTGTACTGCCATTCAATTTGACATGAGTGTGCCTTGAATACTGATCTTCCTATTCACCGTCTCTCAAGACAAATGCGACACTTTTGTGAAGCAAAGGATTTGAACAAAATGAAAACAATGTATCAAATTTATGTGTCAACTTAGTTTCTAATTTGCTTATGAAATTCCAATAGAATATCAGAGATATTACTTCTAAAAATAAAACAAAGCTGCATTTAGGTTAGGAGTAGCCAGCACAACAATAAtgtgtctgtatatatgtatGCATATGTACATAGAAATGCATAAacctatatagatatatatcAAATTCTTCAAATCAGGACAAGACTGTATCCCTAGAAACATGGTCAGAGTGGATTGTATTGCCACACAATAGTCAAGGAAGAGACTGGACTAAAAATCAGGAACTGcagaaacaaaaaaataatttagtGCACTCTGTCTTAAAATACGTTTACAGTATTGAAACAAGTACAAGGGGTAAAATaatatttgtgtgtatgtgtgttttaaacCAGTATTTCTTTTCTTCAAGTTTGCTTATACAGTTTCTCTGAATGCCATGGTGGCGATGTGTATATTGTTTTTTGGTGACGGGGttttagtatatatatatatatgaatatatatgaatatatatgaCATTTTTCTTGTTTACTGTAAAAGTATACCAGTATTTGTAATATTGGAGAATGCCTGGGCAttttacaaaaatataaaaaaagttATTGTTTCTTTCTTTTTATTTTGGAGTCCAATTTCAATGGTGGgtcttttaaaaatgtttatgtCACTGTAACTGTAAAAGTCTTCAGTTTTAGTAACTTCTTCTTTTGCTGCCTTGGTGtaataaaatgaaaataaatgaaataaaaagtgAACTGGTAACAAACTtggatggggtggggggggatgAAGCTGCATCATGTCTGAATTTCCCCTCGTAGAAACTATGGAACATTGTTATTGCTTTGCAGTAAAATACTGACATGTATCTATGTTCTGCTTCTGGATTGGATGCTCTTCATGGCTGGTTTGAAATACATGTGTAGGCACTTGCTGTCTTTCTACAGAAGCTTGTCTTTTTTAACCTGTATGTGCATCCTTCGTGAAAAGGGTACTATAAGTACCCGTATGTCATTATCTTATTTGGGGTAGGGGACAACATTGCAACTTCAAGATAAAACTCACAGGCTGCCAccatttatttgatttaatttggCAGGATAAAATAGTGCAAAAAACCCATGATGAATTTGCATTGTTGACATGAACCTTATTGTACAGAAGGGAAATAAAAAGGTTGTTTGACCTTTTAGCAACAAAAATACACAAGTAGATGTTTTTGTTTACTATACTGTTGGTTGTATATATCTTTAGTTTTTTTATTTAGATTTGAACATTTCTATGTGTTCTAACTGGCACTGGCAGTGACCATCTCTTTAGGGTCATCTAGCTGCCCTTTGACCCTTGACCTTTGGTGACCTGTGTGTCAGTTGTACAGGAACCTGACCTGCCAACCCATAGATTTCACAGCATGAGAAGAATGGAGAACATATACAAGCATGATGTGGTAGAGACGCAGGCAGACAGGTCTGGCCACCAGTCAGAGAAAGGACATGGATAGAGTGTGTAGAAAAAGATACACACATTGGAGAAAAAATGGTAAAGTCTCTTATGAGGTGCAGGGAGATTATATATCTGGATACCTTAGTTAGACATCGTCTCACAGAACCATGTAGTGTACACAGAGCAGCCGAGGCTGGCTGGATACAATCAAAGCTACAAGCTGCATTCGCCTCAAACCAGAAGCTACAATTACAGGCAGTTAGTAGCTACCGTACCTGACCACAATCATATGGACAACTATCAATCAGTCAGAACCAGGGTGTTTATATGAAAGCTGCTCACTTAGATGTACAGAACTGTCCTCCAACTGTTTAGCAGCACAGAACACCCATATCTGTGTTTTATCTTCCTTTTACGATTTGATGTTTCCCTTAAAATATTGGTGCTTTGATATGTGCTAAGAGCTATTCCATGTTGGCTGCACTGTTTGTCTGCCCCTGGGCACCGTAGACAGAACACCAAGCAGAGCAAGGCTAAGCTAGGCGGTTGATGGTGTTCACTTTGTGTATAGACATATTCATGGAACACTGCCCAGTCTGTGGGTATATTCATTTAGTTTTCCTTCAAAGGTGCAGGTGTATTGGGCTAGGCCAGTAGTCCCTCTACATGAGAGACTGAGTGGACGTTAGTACGCCGGTCCTGAATTAGGAAGTAAAAATACAAAGTGCTTTGCTGCTTTCCACTCTTTAGGTTTGACATTCAATCATTTTACTATTtccttttagattttttttatgtttgtatTTAAATAATAACACAGGGTTGGGATAAAGAAATCTGTCATTTTTTATATGTAATAATGTTCTAATACAAATGGAATTGGTCCGGGTCTGGACATACAGGGGGAGGGCTGGGGGCTTTGAGTAGGGATGTTATGCTGTGTGTGATGTCACTTTATTTAAATACATGAACTgattatttaggctgcaattggCTGTGTTGTCTGTGATGTCACTGAGGTGAGGACAGCGTTCCGTCGTTCTCAGGCCTGATGAGTCCAATGCCATTGGTTCGTTACAGTAAACATGACATTCAGACATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2256708 lncRNA upstream 8389 32012506 ~ 32012884 (+) True G1974012
TU2256688 lncRNA upstream 36309 31984731 ~ 31984964 (+) True G1973998
TU2256679 lncRNA upstream 42025 31979039 ~ 31979248 (+) True G1973989
TU2256397 lncRNA upstream 43904 31973253 ~ 31977369 (+) True LOC110504226
TU2256394 lncRNA upstream 86813 31934035 ~ 31934460 (+) True G1973746
TU2256855 lncRNA downstream 4362 32140035 ~ 32140289 (+) True G1974140
TU2256857 lncRNA downstream 5095 32140768 ~ 32140970 (+) True G1974142
TU2256883 lncRNA downstream 36959 32172632 ~ 32172993 (+) True G1974160
TU2256886 lncRNA downstream 38709 32174382 ~ 32177203 (+) True G1974163
TU2256895 lncRNA downstream 52778 32188451 ~ 32188651 (+) True G1974170
XM_036962510.1 mRNA upstream 43902 31934732 ~ 31977371 (+) False LOC110504226
XM_036962789.1 mRNA upstream 110915 31807487 ~ 31910358 (+) False LOC110505805
XM_036962790.1 mRNA upstream 110915 31807490 ~ 31910358 (+) False LOC110505805
XM_036962788.1 mRNA upstream 110915 31807491 ~ 31910358 (+) False LOC110505805
trnaa-ugc-181 mRNA upstream 330998 31690200 ~ 31690275 (+) True trnaa-ugc-181
XM_036962727.1 mRNA downstream 988894 33124567 ~ 33142910 (+) True LOC118944263
XR_002470591.2 mRNA downstream 1147313 33282986 ~ 33288608 (+) False LOC110504337
XM_021585273.2 mRNA downstream 2311028 34446701 ~ 34452587 (+) False dnal1
XM_036962961.1 mRNA downstream 2311562 34447235 ~ 34452587 (+) False dnal1
XM_021585275.2 mRNA downstream 2321842 34457515 ~ 34477147 (+) True tedc1
TU2256317 other upstream 111804 31893983 ~ 31909469 (+) False LOC110505805
TU2256321 other upstream 111804 31893983 ~ 31909469 (+) True LOC110505805
TU2256365 other upstream 140453 31880110 ~ 31880820 (+) True G1973717
TU2256301 other upstream 231824 31787245 ~ 31789449 (+) True G1973669
TU2256257 other upstream 302305 31718524 ~ 31718968 (+) True G1973635
TU2257717 other downstream 768453 32904126 ~ 32905975 (+) True G1974953
TU2258851 other downstream 1651331 33787004 ~ 33788129 (+) True G1976029
TU2258898 other downstream 1700440 33836113 ~ 33840078 (+) False G1976067
TU2259487 other downstream 2312794 34448467 ~ 34452841 (+) True dnal1
TU2259519 other downstream 2344357 34480030 ~ 34480897 (+) True G1976573

Expression Profile