RNA id: XM_021585265.2


Basic Information

Item Value
RNA id XM_021585265.2
length 1616
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110505811
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 33695613 ~ 33698107 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAACTGGTCGGTGACGTCAGCTGAGTATATAACGGGGCTGGAGTTCAAGAGGACCACGAAAACAAGTTAGTGAAGCTTTGGTCTCAATGCACCCACCGGCCACCGGAGTTGGTCCAACAAGAGAAAAACACGCCAACGTCAACAAACTCGATGTTATGACGCAGATTTAGGAACTTTCCGCTGACTGTTTCCTGACCGAAACGAATTTAGGATTTTTAAAAGCAACGAGGTTTTTTATCATCCTTTCCAAGTATCGGTGATGCCCGCTGGTATGTTTAGCATCGACAGTATCCTGGCCGGGAGACCTACTTGCAAGGACTCAGTGCTCCTCCATCGGAATGCCCCGGTGGTGTTCTCGAACCTCACGGATTCCATCTACACCGCTGCCGATTATAATGGACTCTACTCGCACACTACTGGATCTTCTCCATCGGCCATCGAGGCGGTGAACGGGACTAGAATAGGATATAATAACTATTATTATGGACAAATGCATGTGCAGGGCCCCAGTGGCCCTGCTTGCTGCAGCGCTATCCCAGCCCTCGGCTCGCAACAGTGCCCGTGTATTCCAACCGGTTATGACCGCACGGGCTCCGTGCTCATCTCTCCCATCCCGCACCAGATGATGTCCTATATGAACGTGGGCACCTTGTCTCGGACGGAGCTCCAGCTCCTGAACCAGCTCCACTGCCGACGCAAGAGGAGGCACCGGACTATCTTCACCGACGAGCAGCTCGAGGCCCTGGAAAATCTATTTCAGGAGACCAAGTACCCTGACGTCGGCACACGGGAACAGCTCGCGCGAAGAGTGCACCTACGGGAAGAGAAGGTCGAGGTGTGGTTCAAAAACAGACGAGCGAAATGGAGAAGACAGAAAAGGTCGTCCTCGGAAGAGTCTGAAAACTCGCAGAAATGGAACAAATCGATGAAAACACTCGCAGAGAAAACCGAGGAAAACAAAAGTGACGTGGATTCGGACAGCTGATAGGTAGAATATTAACACAAAACAATAGAACGGTTGTATAGGTTGCATAGTGTATGGGTGGATGCGCAAATAGGCTACATACTCGATTGGGACTTCTTGTACATAGTGTAAATGTGATGTGGACTGAAGTAATGAACTATTTTGCCATGATGTTGCACAGTTGTATAGTAaatattacttttattattgCAATGGGGTAAGCTATTTATATTTAATTTAAAGTTGTTGTTATGCATAACGTCCCGAAGATGTGGTGAGCAAGGAGCCTTGATCCGTTTTCTGGCGTGTGTTAATACTTCGCGAGCTGACATGACATCTCATATTTGAGTGGTGTATTCATCATCACGATTTACCGCAAATAATATTTTGAAACTACATCAATGGGGAGAATATATTTCATAGAGTTAAACATAAATCACACTTAATATGAAACAGCGTTTTGTCACCTTTATAAGATAAAAGGACAAGGCTATATTTGTCAACTCATAACCATACAGACGTGTTTGGGGATTTGACTAAATTGATTTGTCAATATGTTGCAATGAATGATAATTACAGGAACAATGAATATACATTAAATCATATCTGAATCCTCTCTATTTCCTTTGTCACCTTTCACATTTGTTCATC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0009950 dorsal/ventral axis specification biological_process
GO:0007420 brain development biological_process
GO:0021999 neural plate anterior/posterior regionalization biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09324 GSC; homeobox protein goosecoid

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2258716 lncRNA downstream 30954 33664164 ~ 33664659 (-) True G1975900
TU2258694 lncRNA downstream 45429 33649954 ~ 33650184 (-) True G1975879
TU2258692 lncRNA downstream 46540 33648801 ~ 33649073 (-) True G1975877
TU2258660 lncRNA downstream 73337 33621971 ~ 33622276 (-) True G1975847
TU2258589 lncRNA downstream 131315 33564088 ~ 33564298 (-) True G1975776
TU2258819 lncRNA upstream 53329 33751436 ~ 33751669 (-) True G1975998
TU2258998 lncRNA upstream 150407 33848514 ~ 33848892 (-) True G1976137
TU2259035 lncRNA upstream 205427 33903534 ~ 33908448 (-) True G1976172
TU2259037 lncRNA upstream 206720 33904827 ~ 33909698 (-) True G1976174
TU2259143 lncRNA upstream 283256 33981363 ~ 33982345 (-) True G1976256
XM_036962728.1 mRNA downstream 20591 33672074 ~ 33675022 (-) True LOC118944264
XM_021585264.2 mRNA downstream 466338 33221592 ~ 33229275 (-) False LOC110505810
XM_036962893.1 mRNA downstream 466338 33221592 ~ 33229275 (-) False LOC110505810
LOC110504227 mRNA downstream 622081 33040661 ~ 33073532 (-) True LOC110504227
XM_021585261.2 mRNA downstream 744722 32925974 ~ 32950891 (-) True LOC110505809
XM_036963142.1 mRNA upstream 66213 33764320 ~ 33829181 (-) True LOC100136218
XR_005039542.1 mRNA upstream 139291 33837398 ~ 33838849 (-) True LOC118944291
XM_036962729.1 mRNA upstream 141727 33839834 ~ 33888222 (-) True LOC110505812
XM_036962342.1 mRNA upstream 233558 33931665 ~ 33977852 (-) False LOC110505813
XM_036962339.1 mRNA upstream 233558 33931665 ~ 33981038 (-) False LOC110505813
TU2258576 other downstream 138802 33556430 ~ 33556811 (-) True G1975763
TU2258248 other downstream 371288 33319729 ~ 33324325 (-) True G1975453
TU2256690 other downstream 1708729 31986443 ~ 31986884 (-) True G1974000
TU2256505 other downstream 2077114 31614421 ~ 31618499 (-) True G1973835
TU2256456 other downstream 2110567 31584540 ~ 31585046 (-) True G1973793
TU2260072 other upstream 779513 34477620 ~ 34478558 (-) False G1977046
TU2260263 other upstream 1177278 34875385 ~ 34876181 (-) True G1977226
TU2260403 other upstream 1272045 34970152 ~ 34971557 (-) False LOC110505829
TU2260406 other upstream 1276686 34974793 ~ 34979507 (-) True LOC110505829
TU2260400 other upstream 1328993 35027100 ~ 35100978 (-) False G1977346

Expression Profile