RNA id: XM_036962341.1


Basic Information

Item Value
RNA id XM_036962341.1
length 4892
RNA type mRNA
GC content 0.58
exon number 20
gene id LOC110505813
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 33931665 ~ 33981041 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTAGGACGCTCACGCCCCAAGATTATCAGTTGCGGATTTGCTGCTCTCCTCTGGCTGAATCTGTTCGGCCAGCCAATGCAGCTATACTAGAGGCCTCTCTCTGCCTGTACTTCCTGCGTATGCTATAAGTTTACAGTACATATCAGCTCATTTGTGTTCAGGCACGCTAGTTGCTACTTTCACCAGATGCACAGGTATCGgcTGGTGTGTGCAGATGACTCATCAGGAGCAGCAGGAGATCCTGTTTAGGGAGAGCCTGGAGGCAGCTATGTCCTGGATGAAGGCCGTCCAGGAGCGGCTCCGGCTCAACGACAACACCCAGGGTCCCCGGGCCGCCCTGGAGgccagactcagagagacagagAAAATCCACCAGTCGGAGCACGAGGGTCATTTGAAGTTTGACAAGGTGCTTGTGGCTGCAGAGGTCTTACTGCAGAACGGTAACCAGGAGACGAGGAACATCACCCATGCCAGACTCAAAGAACTCAAAGCATTATGGGAGGAGACCTGCACCTACATCATCCACTGCCACAGCCGTATAGAGTGGGTGTGGCTGCACTGGAGTGAGTACCTGAAGGCCTATGAGGAGTTTGAGATGTGGCTGGTCAGCGTGTGTCGCAGTCTGGAGCCGGAGGTGGAGCTGCAGCTGGGGGTGAAGGAGAAATTGTGGCAGgtagACAACCAGCGCGTCCTGCTGAGTGACGTCCAGAACCAGGCACTGTTGCTGGAGAGGCTGGTGGACGAGGCTGCAGCGCTGAACAACCGCATCCAGGATCCCAGTGTGGACCAGGAAGCACAGGAGAGACTCCATCTGGCCTATAACAGCATACGGGACAAGGctgatGAGAGGCTGTCGGTGCTGCAGAAGATGGCTGAAGAGCACCAGATGTACCAGAGAGACGTCCTGAAGTTCCAGGCCTGGCTGGTGTCCAAGACTAAGGAGCTCAACACCCTCACTGAGACAGAGGACACAGCCGAGAACAAACTCCGAGCCCTACAGacccTGGATGACAACGTGGCCAGTGAGGAGAGGACGCTGCAGCACATTGAGGTCATGGCGGAGGCAGTGCGGGCCAACACGTCCCCCGGGGGGGCAGATGTGGTGGTGGAGGAAGCAGAGGAGCTGCGTCTGGACTGGCAgaggctgagacagagcctgTGTGAGGCCGGAGAGAGCCTGAAGAGCAGCCTGGAGTCTCAGAGCCAGTACCAGAGCCGCTGCCAGCGTCTAGGGGAGGACATCGGCCAGCTCCGGGGCCTGCTCCACAGACTGACCAGAGACCTGGAGACagccagggagggagacaggaccGGAGATCTGGAGACagccagggagggagacaggaccGGAGATCTAGAGACAGCCAGGGAGGGAGACCGGACCAGAGACCTGGAAACagccagggagggagacaggattGAGGAACAGATGGTTGGGCAGTGGAGGAAATACATGAACATCCGGAATACTTTATTGGCAGAGGAATCCCAGGTGGAGCGCCTCAAGGCCCAGCTTAAAGAACTCTTCCACTTTTCCCAAGATTCCCAGCATCTCTCTGACGACGTCCTGGCTGTGGTGAAGGAACAGCAGAGTGTGAAGTGTCGTGCTATGAAGCTATGTGTGGAGTCAGAGTTGGGTCTGAGACAAGTGCTGCAGGACCCTCTGCATGGATTCTCTCAGTGGAGTCAGGTTGTCTCTCAAGTGCTGGAGTCTTCTGCTGAAGTGTCTGAGTTCTCACACGTCACCATGCTGGTGCAGAACATCCAGAGGTTGCTGAAGCACAGTCTGCAGCTGCAGGAGCAGTTGCGTTTGATGCTGTTGAAGAGAGATCTGCTGTGTTCAGTGTTTGGCTCAGACAGCGCAGAGAGTCTAATGACAGCGCTCAATGACACCGTGAGGAAAAGGGAGGTACTGCACAACCAGCTGCTGCAGAGGAAAGCAAGACTGcagGGTTTGATCTCAAGGACAAAGGACTTTGGGGACGCCTGCAAGTCAATCAGGAACAAGCTGaccctgctgagagagagactgatctcAGCAGACAGCCTCCAGCCGGACATACTGGCCAAGAAGAGCCAGTCAGACCAGCAACGGgtgatcAAGAAGGACTTGGAGGACTGTGAGGACCACATCACAGCCCTGGAGACTCTGGTGTCGTCTAGCTCTGCTAACAGGACACAGTTTGAGAGGCTTTACGGGGACTGGAGAAACCTTTACAAGTCCATCAGGgtAAAGGtgaaggagagtgaggagagcaTCGGGGGGCACGAGAGTTTCCACGTGAGCCTGCTAAACGTGGAGAAGTGGTTGATGATTATGAGGCAGAAGCTGGAGTCCTACCGCAGTTCTACTGGGGAGTGGAGCCTGGACAACAGACAGCAAGAGGCTGAGAGGGCACTAGGTGAGTTCCCAGAGAAGGAACTGCAGCTGCACCAGACAGAGGTTCAGGGCCAGGGGGTGCTGGAGAGGACCTCTGAGGAGGGCCGGGTGCACATCCTCAGGGACATGAAGCACCTGAGGGAGTCCTGGATGGCCCTCCATGACCTCAGCCTCAACCTCTTCAGGCTGCTGAATGGGCACAGCTCTGAGGACCCTGACTTAGACACCCAGAGGGAGTGGGTGAGAGGCCAGGCTGGGGAGAGGCCAGGCCCAGGCAGGGAGCTCTTTCctggggagggaggagacatGATCAAGGGTAGTGGCTCCAGCAGAAGTAGGGAGGGTGCTCCAGAGAGATCCCCAGGAGAGGGCCATGGGGTCTGGCTCTCTCAGAGCTCTGGGGTAGGGGCTGGGAGAGGGGGAAGAACAGGGTCAGGAGGAAGGTTGGAgcgaggggaaggaggggagagtttTGGAGCAGAAGAGGGTATTTGGGTCGAGGGAGCGTTTGAGGGCAGTATGGAGGTTATGGATCTCTCTGAACATAGGGAGAGACAGGGCAGGGATCGACAGACTCTTGGTCAACAACTGAGCCCTATGACGATAACCTTGGCGGGCAGTCAGAGACGGGGACAGGGCGGTGGGAGTGGGGacggggagagggaaagggagaaggagaggggtggtggTGAGCACAGCCTGGGTGTAGAGGAGGGGGACTCCTCCATCGTTTGGAGAGGGGGGTACggtcagaggggagaggagggaaccaCAGGGATGACATCAGGCCACACAGGGGGCAGAAGCACCCATGGTGGAGGAGGATTGGTGGTGGTGGACTCTGGCTCCAGGGTTAGCAGGGTGGTGGTGGACTCTGGCTCCAGGGTAAGTGGGGTGGTGGGGGACTCTGGCTTCAGGGTTAGCGGGGTAGTGGGGGACTCTGGCTCCAGGGTTAGTGGGGTAGTGGGGGACTCTGGCTCCAGGGTTAGCGGGGTGGTGGTGGACTCTGGCTCCAGGGTTAGCGGGGTAGTGGGGGACTCTGGCTCCAGGGTTAGCGGGGTAGTGGGGGACTCTGGCTCCAGGGTTAGCGGGGTAATGGGGGACTCTGGCTCCAGGGTTAGCGGGGTAGTGGGGGACTCTGGCTCCAGGGTTAGCGGGGTAGTGGGGGACTCTGGCTCCAGGGTTAGCGGGGTAGTGGGGGACTCTGGCTCCAGGGTTAGCGGGGTAGTGGGGGACTCTGGCTCCAGGGTTAGCGGGGTAGTGGGGGACTCTGGCTCCAGGGTTAGCGGGGTGGTGGTGGACTCTGGCTCCAGGGTTAGCAGGGTAGTGGGGGACTCTGGCTCCAGGGTTAGCGGGGTGGTGGTGGACTCTGGCTCCAGGGTTAGCGGGGTAGTGGGGGACTCTGGCTCCAGGGTTAGCGGGGTGGTGGGGGACTCTGGCTCCAGGGTTAGCGGGGTGGTGGGGGACTCTGGCTCCAGGGTTAgcggggtggtggtagtagatgTGTCTGGGTCCAGCAGTAGTGGGCAGACAGAGGAGTGGGTGGTTGGGCAGAGGTCCAGAGGAATGGCTGAATCCAGAGGCTTTTTCCCGCCTATCAAGACCAGGATGGAGGATTCAGTCATGGATGGTCTCACCCTGTCATTCCAGCAAGGCACTGCTAGAAAACCCTCTGGAAGGCTACAGGGCTCAAGTCACCACACCACGGCAGATGTTGGGGCAACCCTGAGTGCAGGGGACTatgaggacaggaggagggagTTTGAGGCCTGGCTACAGAAGGAAAACGATACACTCTCAGGGATTCTGAGCACAGAGGGACTGCTGAGCACCAAAGAACTCAAGATCAGGCAGAACACACTCATGACCTTGCGGTCCAGTGTAGACTGGGGTCAGGAGCAGTTCCAGCTACTACTGATGGCTTGGGCTGTAGCCGGGGCCAGGGCTGACCGTGGGGCTGAGGATGTGGGCATGGAGGAGATACGTTATCGCTGGATGCTCTACAAGTCCAAACTGAAGGATGTAGGAGACCTCAAGGCCCTGTTGAATGTCAAGCAGGGTGCCGGTGCTGCTGGCCGAGAGGAACACACCAGGACAGCTAAGGAGAAGACTCCAGGCCTGCTGTACCGTGTGTGTCGGGTGGCCCTGCCCCTCTGGCTCCTGCTGTTGGCTCTGCTCCTCTTTGCCTTCTTCCTGCCCTGGATGGACGAAGCCTCCAGCTGCTCTCTGTCCAACAACTTCGCCCGCTCCTTCAACATCATGCTCCGTTACCACGGACCTCCACCCACATAGAAAGGAGATATAGGATTATGAAGACCATTGCTCTTCACCCTCAATCCATTCTCTGCGTGTGTGTCAGTTtgggtcagtgagtgtgtgtcagtttgggtcagtgagtgtgtgtcagtgtgttaatgcgtttctgctgtgtgtgtgtgggtgggtgaccTCAGCTGTTCTCACACAGTCAGGCCAATTCAGCTCCTCTATCACACAGGCTGGCAGCA

Function

GO: NA

KEGG:

id description
K21761 SYNE3; nesprin-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2259037 lncRNA downstream 21967 33904827 ~ 33909698 (-) True G1976174
TU2259035 lncRNA downstream 23217 33903534 ~ 33908448 (-) True G1976172
TU2258998 lncRNA downstream 82773 33848514 ~ 33848892 (-) True G1976137
TU2258819 lncRNA downstream 179996 33751436 ~ 33751669 (-) True G1975998
TU2258716 lncRNA downstream 267006 33664164 ~ 33664659 (-) True G1975900
TU2259143 lncRNA upstream 322 33981363 ~ 33982345 (-) True G1976256
TU2259144 lncRNA upstream 1396 33982437 ~ 33988957 (-) True G1976257
TU2259197 lncRNA upstream 68885 34049926 ~ 34050169 (-) True G1976307
TU2259221 lncRNA upstream 82878 34063919 ~ 34064216 (-) True G1976331
TU2259223 lncRNA upstream 83658 34064699 ~ 34065539 (-) False G1976333
XM_036962729.1 mRNA downstream 43443 33839834 ~ 33888222 (-) True LOC110505812
XR_005039542.1 mRNA downstream 92816 33837398 ~ 33838849 (-) True LOC118944291
XM_036963142.1 mRNA downstream 102484 33764320 ~ 33829181 (-) True LOC100136218
XM_021585265.2 mRNA downstream 233558 33695613 ~ 33698107 (-) True LOC110505811
XM_036962728.1 mRNA downstream 256643 33672074 ~ 33675022 (-) True LOC118944264
XM_021585269.2 mRNA upstream 8956 33989997 ~ 34016972 (-) True LOC110505815
LOC110504228 mRNA upstream 72510 34053551 ~ 34059575 (-) True LOC110504228
XM_021585270.2 mRNA upstream 88115 34069156 ~ 34072609 (-) True eif2s1a
XM_036962531.1 mRNA upstream 92173 34073214 ~ 34117847 (-) True mpp5a
XM_036962408.1 mRNA upstream 137135 34118176 ~ 34235523 (-) False gphna
TU2258576 other downstream 374854 33556430 ~ 33556811 (-) True G1975763
TU2258248 other downstream 607340 33319729 ~ 33324325 (-) True G1975453
TU2256690 other downstream 1944781 31986443 ~ 31986884 (-) True G1974000
TU2256505 other downstream 2313166 31614421 ~ 31618499 (-) True G1973835
TU2256456 other downstream 2346619 31584540 ~ 31585046 (-) True G1973793
TU2260072 other upstream 496579 34477620 ~ 34478558 (-) False G1977046
TU2260263 other upstream 894344 34875385 ~ 34876181 (-) True G1977226
TU2260403 other upstream 989111 34970152 ~ 34971557 (-) False LOC110505829
TU2260406 other upstream 993752 34974793 ~ 34979507 (-) True LOC110505829
TU2260400 other upstream 1046059 35027100 ~ 35100978 (-) False G1977346

Expression Profile