RNA id: XM_021585270.2


Basic Information

Item Value
RNA id XM_021585270.2
length 1541
RNA type mRNA
GC content 0.48
exon number 8
gene id eif2s1a
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34069156 ~ 34072609 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGAAGGTTTCCAGTTCCGCTTCCGGGTCAGATCGCATGTTCACGCATGCTGATGAAATAGTTGAATTcgatctttgaaattgttacttTTTGAAATTACTACAATTTTAATGTAACAACTTAAGGATATAGTTAAATATCAATATTTGGATAGATCTGTAGCTATAAGAGTGAAGAATGCCGTCATTCAGCTGTAGATTCTACCAGCACAGGTTTCCAGAGGTGGAAGATGTGGTGATGGTCAACGTGCGCTCCATCGCAGAGATGGGCGCCTACGTTAGCCTGTTAGAGTACAACAACATCGAAGGCATGATCCTGCTGAGCGAGTTGTCTCGCAGACGTATCCGCTCAATCAACAAACTCATCAGGATTGGACGCAACGAGTGTGTGGTCGTCATCCGAGTGGACAAGGAGAAAGgTTATATTGATCTGTCCAAGAGAAGAGTTTCACCCGAGGAGGCAATCAAGTGTGAAGACAAATTCACCAAATCCAAAACGGTGTACAGCATATTGAGGCATGTGGCTGAGGTTCTGGAGTACACTAAGGAGGAGCAGCTGGAGAGCCTGTTCACGCGCACTGCCTGGGTGTTTGATGAGAAGTACAAGAGGCCTGGATACGGAGCCTATGATGTCTTCAAACAGGCTGTGGCGGACCCAGCCATTTTAGATTGTCTGGacctgacagaggaggagaaggctgTGCTCATTGACAACATCAACAGAAGACTCACACCACAGGCTGTCAAAATCAGAGCAGACATTGAGGTGGCCTGCTATGGCTACGAAGGCATTGATGCTGTCAAAGAAGCATTGAGGGCGGGGCTAGGCTGCTCCACAGAGGCCATGCCCATCAAgATTAATCTGATAGCGCCGCCGCGCTATGTCATGACTACCACCACGCTGGAGCGCACGGAGGGTCTCTCTGTCCTCAACCAGGCCATGGCTGCCATCAAAGAGAAGatcgaggagaagagaggggtctTCAACATCCAGATGGACGCGAAGGTTGTGACAGACACCGATGAGACAGAGCTGGCACGCCAGCTGGAgcgactggagagagagaacgcTGAGGTGGACGGTGAtgatgaggatggagagatggaggccaAGGCAGAGGACTAAACTAGAGGAAAAACAGACGGCTTGGATACAACGACAAGACCAATTATATACAGTCCAGGGCCAGTATTAGTAAAGCAtctctgagtaggagtgctgatctaggatcaggtcctccatGTCAatgttattcattatgatcttaaaaggctaaactgatcctagatcaccaatCCTACTTTGAGATGTTTCATGAATACAGGCCCCAACAAACtttaatttcaaatcaaatcgtgCGTTCTAGAACGTCTCTCCAACTGAACACAAGCCTCTGTTGGTCAGTACCAGGGACCCTCAGGAAGACTGAACCAGAGAGACGGCTACAGGTGCTAACTATCATACTGCCAAACACAGAGCTGGGAAATGCCCCTGCCATTCTCCCAATGGACAAAATAAACACATTCATATTATCACTGAA

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005850 eukaryotic translation initiation factor 2 complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03237 EIF2S1; translation initiation factor 2 subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2259792 lncRNA downstream 696 34068280 ~ 34068460 (-) True G1976821
TU2259225 lncRNA downstream 3227 34065407 ~ 34065929 (-) True G1976333
TU2259223 lncRNA downstream 3617 34064699 ~ 34065539 (-) False G1976333
TU2259221 lncRNA downstream 4940 34063919 ~ 34064216 (-) True G1976331
TU2259197 lncRNA downstream 18987 34049926 ~ 34050169 (-) True G1976307
TU2259832 lncRNA upstream 71838 34144447 ~ 34145605 (-) True G1976857
TU2259847 lncRNA upstream 94012 34166621 ~ 34167074 (-) True G1976866
TU2259853 lncRNA upstream 108634 34181243 ~ 34181870 (-) True G1976872
TU2259877 lncRNA upstream 154095 34226704 ~ 34227635 (-) True G1976896
TU2259878 lncRNA upstream 155249 34227858 ~ 34228499 (-) True G1976897
LOC110504228 mRNA downstream 9581 34053551 ~ 34059575 (-) True LOC110504228
XM_021585269.2 mRNA downstream 52184 33989997 ~ 34016972 (-) True LOC110505815
XM_036962340.1 mRNA downstream 88115 33931665 ~ 33981041 (-) False LOC110505813
XM_036962341.1 mRNA downstream 88115 33931665 ~ 33981041 (-) True LOC110505813
XM_036962339.1 mRNA downstream 88118 33931665 ~ 33981038 (-) False LOC110505813
XM_036962531.1 mRNA upstream 605 34073214 ~ 34117847 (-) True mpp5a
XM_036962408.1 mRNA upstream 45567 34118176 ~ 34235523 (-) False gphna
XM_036962410.1 mRNA upstream 45567 34118176 ~ 34235523 (-) False gphna
XM_036962411.1 mRNA upstream 45567 34118176 ~ 34235523 (-) False gphna
XM_036962407.1 mRNA upstream 45567 34118176 ~ 34235524 (-) False gphna
TU2258576 other downstream 512345 33556430 ~ 33556811 (-) True G1975763
TU2258248 other downstream 744831 33319729 ~ 33324325 (-) True G1975453
TU2256690 other downstream 2082272 31986443 ~ 31986884 (-) True G1974000
TU2256505 other downstream 2450657 31614421 ~ 31618499 (-) True G1973835
TU2256456 other downstream 2484110 31584540 ~ 31585046 (-) True G1973793
TU2260072 other upstream 405011 34477620 ~ 34478558 (-) False G1977046
TU2260263 other upstream 802776 34875385 ~ 34876181 (-) True G1977226
TU2260403 other upstream 897543 34970152 ~ 34971557 (-) False LOC110505829
TU2260406 other upstream 902184 34974793 ~ 34979507 (-) True LOC110505829
TU2260400 other upstream 954491 35027100 ~ 35100978 (-) False G1977346

Expression Profile