RNA id: XM_036962403.1


Basic Information

Item Value
RNA id XM_036962403.1
length 4512
RNA type mRNA
GC content 0.51
exon number 24
gene id gphna
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34118176 ~ 34235545 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCATCCGCCTCCCCCTCGTTTGATGCGCTCTGCCATTGATTATCTCTGGATCCTCAGTACTGGCGAGAGCGGTGGTAAACATGGCGTCGGAAGGGATGATTTTAACCAACCACGACCACCAAATACGAGTTGGAATTCTAACGGTGAGTGACAGCTGCTTCAGGAACCTGGCTGAGGACCGCAGTGGAGTAAACCTCAAAGATCTGGTCCACGACCCATCTCTGCTTGGAGGCGTCATATCTTCCTACAAAATAGTCCCAGATGAGATAGATGAGATTAAGGAGACATTGGTGGACTGGTGTGATGAGAAGGAGCTGAACCTGATTCTGACCACCGGAGGAACAGGGTTCGCCCCCCGTGATGTCACGCCCGAGGTACATGGGGACCCCAAAGTTTGTGTTTGTGTCCATGCCACCAAAGAGGTGATAGAGCGCGAGGCTCCAGGGATGGCCCTGGCTATGCTGATGGGCTCCCTTCAGGTCACACCTCTGGGCATGCTCTCCAGGCCTGTCTGTGGAATCAGAGGCAAAACCCTCATCATCAACCTACCTGGCAGCAAGAAGGGCTCACAGGAGTGTTTCCAGTTCATTCTTCCAGCTCTGCCCCACGCCATTGACCTGCTGAGGGATGCGGTTGTGAAGGTGAAGGATGTCCATGAGGCTCTGGAGGACCTGCCCTCACCCCCACcgcccctctccccacccctcacCCTCAACAGCATTGCCTGCACCCAGACAGAGGACAAGGGTGTGCAgtgtgaggatgatgatgatgatgatgatgaggatgatgagaaGATGAAGGACAGATGCTTGGTGTCCACCGAGGACCACCacgcccaccaccaccaccacacccactcccactcccacggACACAACTCGCACATCACCGCCGCCGCCATCGCTGCCAAGAAGGGGAAGCCCCAGCACCAtaaccatgctgttgtcatggcTAAAGGTAGCCACTATCTACCTGGTCTGGTATCTAACCTCCCCCCTGCCCCACCTCATTACACCTGCTCCTGCTCTGGAGACCAGCCGGTAACGATCCCAGACAGCATAATCTCTAGGGGTGTGCAGGTTCTTCCCAGAGACACAACTTCTCTGAGCACCACGCCCTCCGAGTCGCCACGTGCCCAGGCCACCTCGCGCCTCTCCACTGCCTCCTGCCCCACACCCAAAGTTCAGTCACGGTGTGGCAGCAAAGAGAACATCCTGAGAGCTAGTCACAGTGCAGTGGACATCACCAAGGTGGCTCGCCGGCACCGCATGTCTCCCTTCCCCCTCACCTCCATGGATAAGGCCTTCATCACTGTACTGGAGATGACCCCTGTGCTCGGCACTGAGATCATCAACTACAGAGATGGGATGGGTCGAGTCTTAGCTCAGGACGTCTATGCCAAAGACAACCTGCCTCCGTTCCCTGCATCAGTCAAAGATGGTTACGCCGTGCGAGcGGCCGACGGTCCTGGAGATCGCTTCATCATTGGGGAGTCACAGGCAGGACAGCAGCCGACCCACACAGTGATGCCGGGCCAGGTGATGAGGGTGACAACGGGGGCTCCTGTCCCCTGTGGGGCGGATGCTGTAGTGCAGGTGGAGGACACAGAGCTGCTTCGAGAGTCTGACGACGGCACAGAAGAGCTGGAGGTACGGATCTTGGTACAGGCACGCCCTGGACAGGACATCAGgcCTATTGGTCATGATATAAAGCGTGGGGAATGTGTCCTGTCCAAGGGTACCCACATGGGCCCTTCTGAGATTGGCCTGCTGGCCACCGTAGGAGTCACTGAGGTGGAGGTGCAGAAGTTCCCAGTGGTGGCTGTCATGTCAACTGGCAATGAgCTGTTGAACCCAGAGGATGACCTGCACCCAGGGAAGATCAGGGACAGTAACAGATCTACACTGCTGGCCACCATTCAGGAACATGGCTACCCTACCATCAACTTGGGCATCGTCGGAGACAACCCAGACGACCTCCTTAATGCACTGAACGAGGGGATCAGCCGTGCTGATGTCATCATCACCTCAGGAGGTGTGTCCATGGGAGAGAAGGACTATCTGAAGCAGGTGCTTGACATTGACCTCCACGCCCAGATCCATTTTGGACGCGTCTTTATGAAGCCAGGTCTCCCCACCACGTTCGCCACTGTGGACATTGACGGGGCACGGAAACTGATATTTGCCCTACCAGGTAATTTCACCTTCAGAGATACAGGCGCCATTTTCATCGACCATGTCCCCGACAGTGAGGCAAGCAGGGTGCCTGTGCCACCGCGCGGAAGTAACCCAGTGTCTGCGGTCGTCACCTGTAACCTCTTCGTCATCCCTGCTCTGAGGAAGATGCAGGGGATCCTGGACCCTCGGCCCACCATCATCAAAGCCAGGCTTTCCTGTGATGTAAAGTTGGACCCTCGTCCAGAGTACCACCGCTGCATCCTGACATGGCACCACCAGGAGCCTCTGCCATGGGCACAGAGCACAGGAAATCAGATGAGTAGTCGACTGATGAGCATGAGGAGTGCCAACGGGCTGCTGATGTTGCCTCCTAAAACAGAGCAATACGTGGAGCTGCATAAAGGAGAGGTTGTGGACGTGATGGTCATAGGACGACTATGATGATGTCATCTTACGgggacagatagatagacagggagagaaagtggTGCATGTCCACATATCATAACTATTCTGTAATATGCAATGGCACAGCTAGTTTTTGTTGATTTGGATAATAAAGTTCATCAAGTATAATTAACCAACATCTCGAACACAAAGTAAATGAAGTACATACATTGATCATGAAATCTGAATTTGAAAAGATCATTGTATTTCAAAGAAAGACAATGTTATACCTTTTAAAAGTGAAAAAAAAGAGATTTattctgtattatattattataattattattattaatattatattgTCATATTAAGCAACTCTGTTTAACTTTCATCCTTGCAATTGCTTTGTGTGTTCAACCCTAGACCTTATAGATAGATAGCAGTAGCATTTCAATAACAAGCTGTAGGTgctcaaaaaaaaatacaaataaaatactatTTTCTTATCTCACAAAAAAATGATAGTAAATACATATCTTCTTTTTGAACAACGGAAACCCTTTTGAGATAATGTCAGAAGTCCCTCTTGGGGAACGTCCtgattctccacccttctcctgaagtgtacacttgCACACTCCCCGTCATTTTTAAAGGCATTGGATtggtgaaggtaggcattgaCTGGAGGGAGTTTCCACCATTACTAGATCCATGCAGGAATAGAGTGAAGAATCAGGATGTAGCCTTGGTGCTCTGTCTTATTAGGAGTGTTTTCAGGGTCCTGAGGGTGCCTTCAGCTATCTTTCCCCTCCCTTTAGTATTCTTCTTCTCTTCTATGCCTCATTATATGGGCTTTATAATGCCTCATAATGGCTTCACACACAGCTTTGCTTGTTGTTTTTCTTGTGAGTCGTGTTTGTGTGCAGTTGCCAAAAGTGGTGGGTATCTTGGGCCAAAAGTCATAGGGTCATCATGATGAGacctgggcctgtattcataaagtggCTCGGAGTAgtgatctaggaccaggtcccCCCGTctatataatcttattcattatgataaactgatcctagatcagcgctcCTACTCCTTTATGATTACAGGCCTTGAAGGTGGAGAAAGGCAGCGAGTGGTTGCCAGTGCCCCCTAGGCTGACTGTTTCCCCTAGCTGCCCCCCAGGCCCACTACTGTAGCTTCCCCTCCAGGCCCACAAGCTGCCCCCCAGGCACCCTAGCTGCACCCTAGCTACCCCTCAGGCCCACTAACTTCCTTCCAGGCTGATTGTTCCCCCTAGCTGCCCCCCAGGCCCACTAGCTACCCCCCAGGCCCACTAACTTCCTTCCAGGCTGATCGTTTCCCCTAGCTACCCCCCAGGCCCACTAACTTCCTTCCAGGCTGATCGTTTCCCCTAGCTGCCCCCCAGGCCCACTAGCTACCCCCCAGGCTGATCGTTCCCCCTAGCTGCCCCACAGGCCCACTAGCTTCATCATAGTCTGACCTGGTCCTGAAGTCCCACCCAGAGACGTGTATTCTTTcacatatctaaatatatgccTCTGGTCCCACCCTGTCCCCCGACCTTCTACTTTACCAACACGGCctgtctccctcccaccctcacccCTCCAGGACTGCTCACCTCACACATACTAGTATAGATATGTGAGGGAACTGGAGGAGGGAGGAAACTtagtattttatttgtttaatttcAGAAGGAAGAAACAGCTTATTTAAAGTGCTGACTGCCTTTTTAACAACTATTCAAACAATGTACAGAAAAATACATGAATACAAAAGAGTGATATTGTACAGATTATGGTGACCAGCAATCCTGACTAAATTAATGAAGCAATGGGGAGATATTGAACTCTGTACTATAAACGTTTTCTGTAATATTGATGAAACTAATGAAAAATTAAACATCCTTGATCATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2259792 lncRNA downstream 49716 34068280 ~ 34068460 (-) True G1976821
TU2259225 lncRNA downstream 52247 34065407 ~ 34065929 (-) True G1976333
TU2259223 lncRNA downstream 52637 34064699 ~ 34065539 (-) False G1976333
TU2259221 lncRNA downstream 53960 34063919 ~ 34064216 (-) True G1976331
TU2259197 lncRNA downstream 68007 34049926 ~ 34050169 (-) True G1976307
TU2259882 lncRNA upstream 4473 34240002 ~ 34246788 (-) True G1976901
TU2259896 lncRNA upstream 30521 34266050 ~ 34266253 (-) True G1976915
TU2259944 lncRNA upstream 52860 34288389 ~ 34288718 (-) True G1976932
TU2259906 lncRNA upstream 92443 34327972 ~ 34442318 (-) False LOC110504230
TU2259910 lncRNA upstream 92443 34327972 ~ 34442318 (-) True LOC110504230
XM_036962531.1 mRNA downstream 329 34073214 ~ 34117847 (-) True mpp5a
XM_021585270.2 mRNA downstream 45567 34069156 ~ 34072609 (-) True eif2s1a
LOC110504228 mRNA downstream 58601 34053551 ~ 34059575 (-) True LOC110504228
XM_021585269.2 mRNA downstream 101204 33989997 ~ 34016972 (-) True LOC110505815
XM_036962341.1 mRNA downstream 137135 33931665 ~ 33981041 (-) True LOC110505813
XM_036962383.1 mRNA upstream 56939 34292468 ~ 34442343 (-) False LOC110504230
XM_036962384.1 mRNA upstream 56939 34292468 ~ 34442343 (-) False LOC110504230
XM_036962730.1 mRNA upstream 463640 34699169 ~ 34700207 (-) True pth2
XM_036962475.1 mRNA upstream 480199 34715728 ~ 34739799 (-) False rin3
XM_036962474.1 mRNA upstream 480199 34715728 ~ 34739802 (-) False rin3
TU2258576 other downstream 561365 33556430 ~ 33556811 (-) True G1975763
TU2258248 other downstream 793851 33319729 ~ 33324325 (-) True G1975453
TU2256690 other downstream 2131292 31986443 ~ 31986884 (-) True G1974000
TU2256505 other downstream 2499677 31614421 ~ 31618499 (-) True G1973835
TU2256456 other downstream 2533130 31584540 ~ 31585046 (-) True G1973793
TU2260072 other upstream 242091 34477620 ~ 34478558 (-) False G1977046
TU2260263 other upstream 639856 34875385 ~ 34876181 (-) True G1977226
TU2260403 other upstream 734623 34970152 ~ 34971557 (-) False LOC110505829
TU2260406 other upstream 739264 34974793 ~ 34979507 (-) True LOC110505829
TU2260400 other upstream 791571 35027100 ~ 35100978 (-) False G1977346

Expression Profile