RNA id: XM_021585275.2


Basic Information

Item Value
RNA id XM_021585275.2
length 1818
RNA type mRNA
GC content 0.51
exon number 8
gene id tedc1
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34457515 ~ 34477147 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATGACGACTGTACTACCCGGAAGTTTTTAGCGTCACCGGGCAAGTTGAAGAATCTATTTGTCCACAAAGTTTAAAATGCAACGTGAAAAGAGTGTCAAAGCGAAAGAAGTGATTGAATCACTTTGTAAACTTCTATATTCACTAGGTTTGGAGTGTGTACCAAGTGCAGAAACGTTCAGACGGGCTAAGTTTAACAAAGGAGAGGATGTGGTGGTGGAGTTCTGGAAGCTCATTCATAGTGTTCTTCTGAAAACACTGCTACTGGAATGTTCTTGCACAACACTTTCAGACTTGGACAGCCATGTGAGAGAGGCACTCTGGCAGTGTGGTTACGGTGCCAGCTGGATTGTTGTGACGACTGCCGGGCTCTGTCCCAGGAGTGAAGTTGGGAGCCGAGAGCTGCTGGTGGCGTTTGGGTGGGTGTTGTCTTCAGGGAGCCTGCTGGAGGCCCTGCTGAGAGCAAGATCCCTGGAGCTGGATATCCTCTCACTCCCACCCACGATCTCACTGAGTAGCCCCAGAGAGGGAGGCTCCGTTGTGGATGTAGATGGCCAAGGAGGCCTGAAGGAAGACGGACTCCTCAGGAGACTCCAATGGCAGTATGGGAAACTCAGGTTCCAGTGGCGGAGGTTGCTCTCCATTCAAGAGGAAAGAGCTAGACTCCTTCACCAGGTCCTTTCCTCCAGCACAATGCCCTCCACGTCCACCTCCCAGCCCTCTTCTGATGACCATCACAGCATGTGCTCAACTGCCCTGAAAAAGgagGTGGAGCGTCTGCAGACTCTCAGTCAGCTGTTGGAGGCCTACCTGGAGTGGAAGAGACAGGAGCCACTCTTCTGGTGCTGGATGgaTAGTGTTGTGGACAGCCAGCTCTCAGACCTGAGAGAGGAGGACACTGTAGAGAACATGTCACCTGTACACCAAGTTGTCAATAGGTGCTTTCCCTACGGTTACAAGGACAAGGAGGGTCTGGAACAActggacaacatgctgctgaggCTGCACACAGGGCTGAAGGACACATACACAAGACAGAACAGAAAAGCGCAGAGTGTTCTTCAAGACGCTGAGGAGTTGGAGGAGATTGAGAGGAGAGTGGCTCTCAGGCTGCATGGCTTTGCTGAGTCCTGTACTTCAACTCCTACATCTGGTTGCTGTAGTTACAGGCCAAGTCTCCAGGGGCCACAGCCACTTCCCAACCATCACCAGCCTTGTAGGCCAGGGTCTGTGCTCCCACAAGCCTGTGATGGGGCAGTGCTGCCAGGCAAGGTGTCTGGGACAGGCACGGTGATGGTCCAAGTCCAGGCCTCCTCACTGATCGTCaagctgcagcagagagaggacTTCCTGCTGGGGGAACTGGGCCAGATGAGGCAGGCAAAGCGGGGACAGATCCAGGAGAAGACAGCCAGCTGGCTGGAGGGGGTTGGAGTTGTCCtcatcccccctcttcctctcaaGAGATAAACACTAACAGGATTCTACTTCAGGGTGTCTGTGCGTGCAAGCGAGTGAACAGGATGCTGTTCAGCTCGGTGGCTGACAGACTGTCTGTCCCCAGACTACTTTCATAGACATAGAATGACTAGAAGGTGCAAAGCTGCTCGACAATTTGTGGCTATATGTTctattaattatatttatttgtctactgctactgctaatatATTATGATGTGATGGACTGCATGTGATATATTTCAAATGACATCTGAAATGCACATGAATCAGTTGAAATCaagatatttgtgtgtgtgttgatgtaatcCACTGTGGGAGACAACATAAACACCTGTGTGGGCTGGCTGTTAagttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2259491 lncRNA upstream 1792 34454335 ~ 34455723 (+) False G1976546
TU2259492 lncRNA upstream 1792 34454335 ~ 34455723 (+) True G1976546
TU2259452 lncRNA upstream 91881 34363725 ~ 34365634 (+) True G1976510
TU2259354 lncRNA upstream 173761 34283546 ~ 34283754 (+) True G1976455
TU2259348 lncRNA upstream 180764 34276543 ~ 34276751 (+) True G1976449
TU2259523 lncRNA downstream 5178 34482325 ~ 34482599 (+) True G1976577
TU2259526 lncRNA downstream 10972 34488119 ~ 34488362 (+) True G1976580
TU2259528 lncRNA downstream 15197 34492344 ~ 34493159 (+) True G1976582
TU2259529 lncRNA downstream 16817 34493964 ~ 34534632 (+) True G1976583
TU2259546 lncRNA downstream 46457 34523604 ~ 34526477 (+) True G1976599
XM_021585273.2 mRNA upstream 4928 34446701 ~ 34452587 (+) False dnal1
XM_036962961.1 mRNA upstream 4928 34447235 ~ 34452587 (+) False dnal1
XR_002470591.2 mRNA upstream 1168907 33282986 ~ 33288608 (+) False LOC110504337
XM_036962727.1 mRNA upstream 1314605 33124567 ~ 33142910 (+) True LOC118944263
XM_036962225.1 mRNA upstream 2321842 32021273 ~ 32135673 (+) False LOC110510947
XM_021585277.2 mRNA downstream 204585 34681732 ~ 34685739 (+) True tmem121aa
XM_021585279.2 mRNA downstream 273737 34750884 ~ 34771020 (+) True LOC110505824
XM_036963044.1 mRNA downstream 535548 35012695 ~ 35044704 (+) False LOC110505830
XM_036963043.1 mRNA downstream 535569 35012716 ~ 35056944 (+) False LOC110505830
XM_036963041.1 mRNA downstream 535584 35012731 ~ 35056944 (+) False LOC110505830
TU2259487 other upstream 4674 34448467 ~ 34452841 (+) True dnal1
TU2258898 other upstream 617437 33836113 ~ 33840078 (+) False G1976067
TU2258851 other upstream 669386 33787004 ~ 33788129 (+) True G1976029
TU2257717 other upstream 1551540 32904126 ~ 32905975 (+) True G1974953
TU2256749 other upstream 2382754 32073992 ~ 32074761 (+) True G1974049
TU2259519 other downstream 2883 34480030 ~ 34480897 (+) True G1976573
TU2259520 other downstream 3757 34480904 ~ 34481279 (+) True G1976574
TU2259521 other downstream 4372 34481519 ~ 34481921 (+) True G1976575
TU2259636 other downstream 224833 34701980 ~ 34703894 (+) True G1976680
TU2259645 other downstream 252880 34730027 ~ 34731311 (+) True G1976689

Expression Profile