RNA id: XM_036962475.1


Basic Information

Item Value
RNA id XM_036962475.1
length 5879
RNA type mRNA
GC content 0.47
exon number 13
gene id rin3
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34715728 ~ 34739802 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagaagtgggacaagaagaggagaaagagagggagggtttGAACCGTTTTTTTAGGAGATCTGTGATCTTCTTGGCAGACCTGAAGGCTAGCTGTGTGAAGggggaaggagtggaggagaggagggcggCAGGCTGACCACACTGGTCTACCTCTTCCTGAAAGCAACTCCgctcagagagacaggaagtagagacacagaaagaggggagggggaaagaaagagtcacagagagagagaatacttttCCTGTCACCAAACTTTTTGAAAACTGCGGGACTAGAGTGTGAAAAataaagatagagagaaacaCAGTGTGAAATAGAAAAAGGAGATTGAGAACAAATCCAAGGACATGGAGGAGTTCTCAGGCTACCATCATGGATTGTTCCAGTGGAGTTGTGTGTGACTGACAGAGGGGGTTGCTTTGAAGACGGACATTAGGAAAGAGTTTGAGTCCGAACGACAGAATGATAAAAACAGCTGTTCTCTCTCAGGAGACCGCATCTACTGGATATTTTTAGTGCGTAAAAGCCACGACCAGAAATCCATGGTGCTGTCAGTATGTGTATCTGACAAGCAGGAGGAGCTTCAGGTCCAGGACATTCTGATTAAGGAGGAGAAGTCACtGATGTACCTGGAAGGGTCTGTTCTGGTCTTTGACAACATCTTCAAACTCATGGCCTTCTACTGTGTCAGCCGGGATATTCTACCCTTCACCCTGAGGTTGCCTCAGGTCATCGTCCAGGCAACCAAGTACGAAGATATAGAGATGATATCGACATTAGGCTCAGATTTCTGGGGTTCTCAGCTTCACAGCTCCTCAGAAATGGTAAAACGTGATGACCAGGGTCAGGGCCACAACAGTTCGTCCTGTGAGATCCAGCTGTCCACCAGGAATAGTAATGACCGTCTGTGGTACATCAACCCCATCTTCATCGAGGAGTACTGCAGCAGCCTGGAGGCCTCCACCCTCGTCCCAGCTCCCATCCACAGGAGCCAGAGTCTGAACACCCCAGGCCCGGGGCAGGTGCAGGTACCCCCCAAGTTCAAACGCCCTCCACCCAGGCCCCCAAATGTCCCAGAGGGCTTGATTCTGTCACAGTTGGCTAAGCAGGGTGCCAGAGGGGAAAGTGTCTCCCCCAGGTCTCCACCCCCACCGCGAACAGTAATAGCCAAGGCAGCAGGTCAGAAAGCGGAAGGAGACAGCAGCAAAGAcactgaggagggagagggagctgcTTCTCAACTCATCTCAGAGAAAGAGGTGTCAGTTACTGTTACTGACTCAGTAGCAGCTACTCAGCCTCTACAGCCACTGTCACCGCACGGAGCAACAGCAGGACAGAAACACCCAGCACCCCGACCACCCCCACACAGGATACCACTTGTACCCCTTCGGCGGAAACCCTCAGAGAACCGTCCCTCAATCCCAGGACAGGAGGGCGGTGTTGGTCCAGTGCCTGTTGCTTCACTGGTCTGCATCGATGACACCACTAACATGGCAGAGGAGAAGATAGGAGTGGAATCCCATGCCGGTGAGACAGAGACACTGCAGAACAAAGGGACATCAGGGGCTTCAAACATTAGTGAGGTTGTTACCGTGGCTATAGCCCCGCGGACGAAGAGGGCCTCACATCCAGTCCCGCCTCCCAGGAAGAAGAAACCCTCTCAGTTAACGCCCCCCAGACCTCTCTCCCGAAACGTGATAAGCGGAGGACTTCTGTCAATCAATTCATCATCGGATACCCCCCAGAACTCCAGCACCCCCTCGCCTGCCTCGAGGCCCACCTCCATCCCCGTGGGTGAGGCCAGGGGGACAGATGTGTCCTTGTACTCCCCTGATGGGGAGGCTGTCTTCCCTGCCCTGGAACATGACTCCTACTCTACCAGCAGTACAGAGGAGGAGGCTGACACTGTGGCCAGCGGGGCTGTAGGGACCGGTGGGACCAACAACACCAAGGTGTCGATGAAGAGGACCCCTACCATCATGCTGGACCGAGCCAAGCACCGCCTCTCCAGCGTGTTCACTAACTTCATGAACACCGACCACAAGCTCCAGAAGAGAATCCTAGAGCTGTCTAGGGATGGGAGCTCCTACTTTGGCACCCTGGTGAAGGACTACAGGGTGTATATCCTGGAGACCATGGGGAAGCACAGCTCCAGCACTGAGCTGCTGCAGGAGATCAGGCAGATGATGACCCAGCTGAAGAGTTACCTCATCCAGAGCACTGAGCTACAGAATCTACTGGAGCCCAACATCTACACAGAGGACAAATTGGAGGTGATTATTGAGGCTGCCCTGTGTAAGGCTATGCTGAAGCCTCTGAGGGAGGCTGTGTATTCAGGCCTGAAAGACATCCACGCCAGGGACGGCTGCCtgaagagactgagggagaacCAGAGTGTCGTCCTGGGTACCACAACCACAGAACTGGGGATCACCACCAGCGTCCCAGAGACCCCTGTCATGGAGAAGATCCAGCTGAAGTTGATGACCCTCCACCAGGAATACTCCCCTCAGAAGAAGATTGATCTGCTCCTTAAGACCTGCAAGATCATCTATGAATCCATGTCTATAGGCTGTCCATCAGGGAGAGCCCATGGTGCAGATGATTTCCTCCCGGTGCTGATGTACGTCCTGGCCAGGAGCAACATGGCCTTCCTGCTACTGGATGTAGAGTATATGATGGAGCTGATGGACCCTGCACTGCAGCTAGGAGAGGGCTCCTACTACCTGACGACTACGTATGGAGTGTTGGAGCACATAAAGAACTATGAGAAGCAGGTGGTGACACGGCAACTCAGTCTGGAGATCCAGAACTCTATCCACCGCTGGGAGAAGAGACGCACCCTGAACAAAGCCAGCGTGTCACGTTCATGTGTTCAGGACTTCATCAACGTGTCATTCCTGGAGGCGGGATGCAACACTAAGACCCTGAGGGTCCGCCCCAACACCACAGCCCAGGACCTGTGTGCCCAGTGTGCTGACAAGTTTGAGGTGGCAGAGCCAGAGTCCTACAGCCTGAGTGTGCTGGTGGAGGGCCACCACCAACTCCTGGCCCCTGAGGAGTTCCCCCTCCCCATCAAGTCCAGTCTCCACCACAGTCAGCCCCTCAAGGAGTACTGCTTTGTCTACCGGCCTGGAAGGACAGAGTCAGAAGGACAGGAGGCAGAATCCCAGGAGGCAGAATCCCAGGAGGCAGAAGGACAGGAGGCAGAAGGACAGGAGGCAGAAGGACAGGAGGCAGAAGGACAGAAGGTGGAGAGCAAGGAGCCAGCTCCTGCAGCCGAGCCAGAGCCTGAGAAGGAGGAGAGTCTGATCGAGATATGATGAGATCAGTGTGCgggtgcgtgggtgtgtgcgtgcgtacatgCATGTGTGGGACAAAGGATCAAGGAGCTGCTCAAGTGAATACAATGGCTTCTGCCTCAATCATTATAGCCATTTTAAATGAGATATTGGTTTTTGCCTTATACACAACCATATTGACAATGTTTAGGCCTGCCCTTGACAACGTGGATACATTCTGAAAGAAGAGAACCTCCATCATCTCCTCACCTTGATCTTCAGGTCTAAATATCAAATCACACAACATGAGACTCAAGTTTACTTTAGCTTCCATACAGATGTGCTCTATCTTAATTTGATCTGTTTCTCACAGCAGGAcagtaatcctgcagcaacaggaaatgtgaattattatgtgtattataatGAATGGATATTTTTGTAGAAAAGTGACACACTTTTCattagggaaaatcaagtctaaaATGTttagtggaaattacaaactttagaagcctttgaaaaaaatgtaatacactacaagtttgcactTCCTGCTGCGCAGgaacaacagagtgatcaaattaagagagCACATCTGTATGGCTTCTATTGTAAGTCATATTGCTCAGTGAAGAAGACCTACCACCGGCAACTCATATAGGACTGGTTCATACTTCAGACTTTGAATATCATACAGGGGATCCACACAAGATCACTTCAACTTTTATATTACTTCTATGAGAACTAGCGCTGTGAGCCCTGCTTCCTCTTTCTGCAAAGTTGGCCAAAGCTACAGAGATAAAGAGGATATCGAAAGGGCATAATAGGCTGTATAATTAAACTGTAATGGATCCGGATAAGGAGTCtctgcctgcatcccaaatggcacattattccctatgtagtgcactacttttgaccagggcccatagtctggtcaaaagtaatgcactatgtagggaatagggtgttatttgggacacaGTCCATGTATCCTGTGCGGACGGTGTTCATTTTCATATTTAACAGATTTGCTTCTGCCACAGTTCAGATTGACAATCAGCTGTTCATTGGTTTTGTTAATCGAATTTAGCATGACAATATCCTTGCCAATAATTATGTCACTGGGTTTATATGCTCAAGAAAGACTCTGCGACTCTCTGTACTGTAAATCAATTTTTGCTGTGCTGGTTTGTATACTCTTGTAGCTGTGCTGTGGCCACATTACATTGGTGTCCTGTAAGAACTTTTGAAGTCTCATTCTAGAGGGGTTCTGCTACAATGCCATTCATTTTAAGTTCAAATCCAAGTCTACCAGGCACTgatggtgtacagcaatattACACTGTAATTACATTATATAGCATTATGGCTTTGATACTTTTTTTCACATTGATGAGttgattgttttgtttttaaaaggTGAAATGTGAAATGGTTTATGTGGATGTATTAAGAGATGAAACCCAGTAAAGCATTGTTTTTTTAATCATTTCATAAATTCCAATATTTCCCATTTTAAATATTTGGGAGTAAATATATTTCCTTTCTTTGTTAAAACCATTGCCAGAACTTTAACAGAACTCTTAAAATCAATTCAATCTGCCTCAGTAGATAGAATAATATCCCAGTTGCTTTAACCAGCAGAATATCTATTGTCAAAATGAATATATTGCCACGGCTGAATTTCTATAGTTCAATGCTTCCCATGTCTCCCCCTTCTGGATATTGGGATACAGTTCATAGTGAGGTTATGAAATGTTTAGTATATGGCAAGTTATGGCAAAATTAACAAACTTGCAAAGAGGGAAAGACGTAGGAGGACCCAAGTTTCAATTGTATTTCCAGGCACTAGCATTTTGCCCCATCCTGTTTGTTTAGAAATGATTCTTCTGCCCCCTGGCTGAGTACAGAAATACATACTGCCCTGGAGGACCAAGTCTTCACTAATATATCCCTAAAACCAGGGATCCTCAACTAGATTAAGCTGCGGACAGATCTTTTTATTTTTCTTGAATGATGGTCGGGGCCAGGAGACATAATTgaaaataatttgtacactgctaattgaccgcaagaagcccaaacatatctaatatttgactaaaacataatcatttcaaaccttactTACATTTGCATTAGTGCTGAGCTATTTAACCAAAATATCAATTATTTTACGGCTTTTGAACAACTATttgaatttgtttgtttttttcttctgtgagctcaatgcacagtttctctagagataaatcaggtCCAGCCGGAACtctgcgatgtagtagggagttggaAGTAGGGAATACAGGCCAGTATTGTCacatcttctcctgctcctcccttcTGGCATACGATGTCGCCGACCAAcggtcctgggattcatcattacgcgcacctgttaatcattatgactcacacctggacttcattaccttcatcatttcctcccctttatatgtcactctcttATGTTCATTCACCAGTTGGTATTATTCTTGTGTACCGGTGTGTAGCTACATGGAATTGTCTCGTTcctggttttgttgttttattaaacgtttcacctgcacctgctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2259868 lncRNA downstream 44838 34566914 ~ 34670890 (-) True G1976887
TU2260121 lncRNA downstream 152216 34554573 ~ 34563512 (-) False G1977090
TU2260120 lncRNA downstream 152216 34562919 ~ 34563512 (-) False G1977090
TU2260123 lncRNA downstream 152216 34562919 ~ 34563512 (-) True G1977090
TU2260080 lncRNA downstream 234622 34480651 ~ 34481106 (-) True G1977050
TU2260209 lncRNA upstream 2509 34742308 ~ 34742527 (-) True G1977175
TU2260199 lncRNA upstream 10730 34750529 ~ 34752123 (-) True G1977166
TU2260196 lncRNA upstream 15689 34755488 ~ 34756430 (-) True G1977163
TU2260194 lncRNA upstream 16509 34756308 ~ 34772312 (-) True G1977161
TU2260272 lncRNA upstream 156278 34896077 ~ 34896628 (-) True G1977235
XM_036962730.1 mRNA downstream 15521 34699169 ~ 34700207 (-) True pth2
XM_036962383.1 mRNA downstream 273385 34292468 ~ 34442343 (-) False LOC110504230
XM_036962384.1 mRNA downstream 273385 34292468 ~ 34442343 (-) False LOC110504230
XR_005039491.1 mRNA downstream 480183 34120446 ~ 34235545 (-) True gphna
XM_036962399.1 mRNA downstream 480196 34118176 ~ 34235532 (-) False gphna
XM_036962963.1 mRNA upstream 35085 34774884 ~ 34893972 (-) False LOC110505825
XM_036962964.1 mRNA upstream 35085 34774884 ~ 34893972 (-) True LOC110505825
XM_036962881.1 mRNA upstream 157777 34897576 ~ 34912793 (-) False LOC110504231
XM_036962990.1 mRNA upstream 173111 34912910 ~ 34950168 (-) True LOC118944354
XR_005039447.1 mRNA upstream 220002 34959801 ~ 34961283 (-) True LOC118944135
TU2260072 other downstream 237170 34477620 ~ 34478558 (-) False G1977046
TU2258576 other downstream 1158917 33556430 ~ 33556811 (-) True G1975763
TU2258248 other downstream 1391403 33319729 ~ 33324325 (-) True G1975453
TU2256690 other downstream 2728844 31986443 ~ 31986884 (-) True G1974000
TU2256505 other downstream 3097229 31614421 ~ 31618499 (-) True G1973835
TU2260263 other upstream 135586 34875385 ~ 34876181 (-) True G1977226
TU2260403 other upstream 230353 34970152 ~ 34971557 (-) False LOC110505829
TU2260406 other upstream 234994 34974793 ~ 34979507 (-) True LOC110505829
TU2260400 other upstream 287301 35027100 ~ 35100978 (-) False G1977346
TU2260401 other upstream 287301 35027100 ~ 35100978 (-) False G1977346

Expression Profile