RNA id: XM_036962963.1


Basic Information

Item Value
RNA id XM_036962963.1
length 8582
RNA type mRNA
GC content 0.53
exon number 41
gene id LOC110505825
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34774884 ~ 34893972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCTGACGGGAATGAAGAATGAGCGTGCTGTGTGCACAGTCGCAAGTTTTACAACCCCTTTCCCGACCTTGCCCGCTCTGGCTCTCCAAAACCGTTCCATCCAGGAGTCCACTGCCGTGACCAGGACTCGTCTAGTGATTCCATGGGATTATTAATGGGGTTTTAATTTGAGGGAAATACAAAGGTGTATATTTTCTTGAAGGATTATATCAAGCATAGAGCAGCTGAAGCGGTCTCCAGCCCCCAATTACCTCACTGAGCCACCGACCCCACCGCCACACTGGCTGCAGCCATGACGTCCACCACGGACTTTGACAATGTTGAGATCACTCAGCAGTACAGCCGCATCAACACACGCTTCGAGCTGCTAGAAGAGGAGCTGGACAATGACAACAGCTCTGCAAGACTGTTTGAGAGGTCACGCATCAAAGCCCTCGCAGATGAGCGTGAGGCGGTCCAGAAGAAGACCTTCACTAAGTGGGTCAACTCCATCCTGTCCCGGGTCAGCTGTCGTATCTCTGACCTGTACCTGGACCTCAGGGATGGACGCATGCTCATCAAACTACTGGAGCTCCTCTCTGGAGAGAAACTGccCAAGCCCACTAAGGGCCGTATGCGGATCCACTGTCTGGAGAACGTGGACAAGGCCCTGCAGTTCCTCAAGGAGCAGAGGGTCCACCTGGAGAATATGGGATCACACGACATCGTCGACGGCAACCACCGCCTCATCCTGGGACTCATCTGGACCATAATTCTCAGATTCCAGATTCAAGACATTGTGGTGGAGATGGGACAGGCAGACGGGACTCAACGGGAGAGCCGCACAGCCAAGGACGCTCTGCTACTCTGGTGCCAGATGAAGACTGCCGGATATCCAAACGTAAACATCACCAACTTCACCACCAGTTGGAAAGACGGAATGGCGTTCAGCGCTCTCATACACAAACACAGgccaGACCTGGTGGACTATAGTGGCCTGAAGAGGTCCAATCCAACCCATAACCTTCAGAATGCCTTCAATGTAGCAGAGCAGACGCTTGGAGTAACAAAACTGTTAGACCCTGAAGATGTGTTCACAGAGAACCCAGATGAGAAGTCCATCATCACATATGTTGTGGCTTTCTACCACTACTTCTCCAAGATGAAGGCATTAGCGGTGGAGGGGAAGAGAGTTGGCAAGGTACTAGACCATGCCATAGAGACAGAGAAGATGATTGACAAGTACGAAACCCTGTCGTCAGACCTGCTGACATGGATACAGCAGACCATCATGATCCTGAACAACCGTAAACTGGCAAACTCTCTGACCGGGGTCCAACAGCAGCTCCAATCCTTCAACTCCTACCGCATAGTGGAGAAACCACCCAAGTTCCAGGAGAAAGGTAATCTGGAGGTGCTGCTGTTCACCATCCAGAGTCGTATGAGAGCCAACAAGCAGAGAGTCTATACCCCCAAGGAGGGGGCTCTAGTGGCTGATCTCAACAGGGCCTGGGAGCATTTGGAGTGGGCTGAGCATGAGAGGGAACGTGTCCTGAGAGACGAGCTGATTCGTCAGGAGAAACTGGAGCAGATGGCCAGACGCTTCGACAGGAAGGCTTCCATGAGAGAGACCTGGCTACTGGAGAACCAGAGACTGGTGGCACAGGACAACTTTGGCTACGACCTGCCGGCGGTAGAGGCCGCTAAGAAGAAGCACGACGCCATCGAGACGGACATCGCTGCCTACGAGGAACGCATCCAGGGCATAGTAGCCATCTCCAAAGAGCTGGAGTCTGAGCGTTACCACGACACCAAGCGCATCGACGTGCGTAAGGACAACATCCTGAGGCTGTGGGATTACCTACAGGAGCTGCTGAAAGCTCGCAGGGCACGACTGGACAAGAACCTCACCCTGCAGAGGATCTTCCAGGAGATGTTGTACATCATCAACTGGATGGATGGGATGAAGGCTCGGCTGCTCTCCCCTGACTTTGGGAAGCACCTGTTGGAGGTGGATGACCTGCTCCAGAAGCATGCTCTGGTGGAGGCCGACATCACTGTGCAGGCAGAAAGAGTTCACGACTCCAACGCGGCTGCTCTCAAGTTTGCCAATAGAGATAgctaCAAGCCCTGTGACCCCCAGGTGATTAAGGACCGGGTGCAGCACCTGGACCTGTGTTACCAGGAGCTGTGTGCCCTTGCGGCCCAACGCCGCGCTCGCCTTGAGCAGTCCCGACGCCTCTGGAACTTCTTCTGGGAGATGGCCGAGCTGGAGAGCTGGATCAAGGAGAAAGAGCATATCTTCTCGTCGCTGGACTACGGCAAGGACCTGACCAGTGTGCTAGTCCTGCAGAGCAAACACAGTGCCTTCGAGAACGAGCTGGGGGCTCGCCGTGCACACCTGCAGCAGATACTGGATGAGGGTGATAAGATGATCCAGGCCAGACACTTTGGGGCACCACAGGTTGGGGATTGCATGGAGGACGTGAGGCGTCAGTGGCAGCAGCTGGAGGAACTGGCAGCGTTCAGAAGGCAGAACCTCCAGGACACCCAGAGGTTCTTTCAGTTCCAGGGAGAGGCTGAAGACCTGAAGGCCTGGCTGCTGGATGCCAAGAGGCAGATGACTAGTGATGACATGGGCCATGATGAGTATACCACCCAGAGGCTGCTGAAGAGACACCGAGACCTCCGGAACGATGTCGCCAGGAACGGAGCCACCATCGATGCTCTGACCAAACAGGCGGCGGCGCTACCCGAGGAGCTGCGCAACACGCCTGACATCCAAAGACGCCTGAAGGACATCAGAGACCTGTACATGGAGCTGATGTCCCTGTGTGACCTGAGGCAGAGGAAGCTGGATGATGCCATGGCCCTCTACACCATCTTCAGTGAGACAGACTCCTGCGAGCTGTGGATGGGCCAGAAGGAGACCTGGTTGGTGGGGCTGGACGTACCGGAGAATCTAGAGGATCTGGAAGTGGTGCAGAACAGGTTGAGTATTCTTGCTTCAGATATGGCTAATGTCCAGACGCGTGTTGATGATGTCAACAAAGCAGTGAAGCAGCTTGAGGACAGCAGACACCCGTGTACCAAAGAGGTGAAGGAATGCCAGTTGAGACTTAATAAGAGGTGGGAGGCCTTCAAGGCCATGGTTGTGGACAAGAAGCGTAAGGTGGATTCAGCTCTCAGCTACCACAACTATGGACTGGAGTGTGACGAGACAGAGGCCTGGATCAGGGACAAAACCCGGGTCATCAAGTCTACCCAGGACCTGGGCAATGACCTGAACGCTGTGATGACCATCCAGAGGAAACTCTACGGCATGGAGCGGGACCTGGCTGCCATCGAAGACAAGCTCAACTTCCTGAGGAGCGAGGCGGACCAGCTGGCCAAGGACCACCCAGACAACGCTGCAGACATCCTGTTTAGGAGAGCCGAGCTGGACGCAGCCTGGGATAACCTGAGGGCCACCCTGAAGGACCGGGAGGACTCTCTTGGAGAGGTGTCCAAACTGCAGACCTTCCTACAGGACATGGATGACTTCCAGTCCTGGCTCTTCAAGACCCAGAAGGCCGTGGCATCCGAGGACCTGCCTGAGACCCTGCCCCAGGCTGAGCAGCTGCTGAACCTCCACGATGATGTATATGATGAAATGGATGCTCATGAGGAGGACTACCACAAGGTGAGGGACACGGGCGTGGCGGTAACCCAGGGCCAGCTGGACGACCCTCAGTACAAGGAGCTGGACAAGAGGCTGAAGGGTCTGGACTGCGGCTGGGACGAGCTCCACAAGATGTGGGACAGCAGGAAGGGCTTCCTGGACCAGGGCCTGGGCTTCCAGCTGTTCATGAGGGACACCAAGCAGGTGGAAACCATCCTCAACAACCAGGAGTACACTTTGGCCCACACAGACAAGCACGCCACCCTGGGTGGAGCCGAGCAGGCCCTAAAGAAGCACGAGGACTTTGTCTGCACCATGGACGCCAACATGGAGAAGCTTGCCAGCACGCTTGAGGGGGGACAGAGATTGGTGGACAGTGGGAACCTCTACTCCCCCAGGGTCCAAGACAAGATGGACTCCATCCATGACAGGTACAACAAGAACCGAGGCAAAGCCAACGAGGTGACAGGGATCCTCAAGGATAACCGTGATCTTCAACACTTCCTGCAAAACACTCAGGATctGACTCTGTGGATAAACGAGAAGATGTTGACTGCTCAGGACGTGTCGTACGACGGAGACAGGAACCTTCACACCAAGTGGAAGAAGCATCAGGCCTTCATGGCTGAACTGGCCTCCAACAAAGACTGGCTCAACAAGAtagaccagGAGGGTCAGGAGCTGATGGACTCCAAACCTGATTTCGAGCCAATCGTGACGGTGCGTCTGGCCAGGCTGCATGAGCTGTGGGACAAGCTGGAGTCCACTGCCGAGGACAAGGCCCGTCTGCTGTTTGATGCTAACCGCTCCGAGCTGTTTGACCAGAGTCAGGCTGACATGAAGAAGTGGTTGGCTGAGCTGCAGAAGGAACTACAGGGAGACGACGAGGTCAAGGACCTCACCAACGCCAACATCCTGCTCAAGAAGCaccagCAAACAGAGAACCACGTGCGTGACCGAGCCAGGGAGCTGGAGGATCTCCAGGAGGCTGTCCAGAAGCATGGTGGCCCGGCCGGGAGCAGGGAGGACCAGCCGGAGCTGGAGGCTGAGCAGCAAGCCATCCAGAGGGACTTCCAGCAGCTCCTCACCCCCCTGGCCCAGCGCAGGGGCAAGTTGGAGGCAGCCAAGGCCGTGCATCAGTTCTACCGGGACCTGGCTGATGAGATTCTCTGGGTAGAGGAGAGGTTGCCCCTTGCGATGTCAGATGAACATGGCAGCAACCTCCAGACGGTCCAATTGCTGTTGAAGAAGAACCAGACGTTACAGAGGGAGATGAAGGGCCACCAGCCGCGGGTGGAGGAGGTGTTGGAGCGTGGCCGGAGGATGGCATCAGCCGCTACAGAGGAGGGCGGGCCGGAGGCAGAGCGTATTGGAGAGcagGTGAAGGAGCTGAAGGAGGTGTGGGCCAGGCTACAGGAGGAGATGGCTAAGAGGAGAGACCGGCTGAATGGATCTAACCGGGCCCATCAGTACTACAacgatgctgacgaggcagaagCCTGGATAGGAGAGCAGGAACTCTACATGATTGCTGATGACAAGGCCAAGGATGAGCAGAGTGCCATGTTGATGTCGAAGCGTCACCTGATAGTGAAGCAGGCTGTAGATGTCTACTCAGACTCCATCCAGAAGCTGTCTGACCGTGCTCAGAAGATGCTGAATGAAGAccaccctaatggtGAATCTATCATCCGTCGCCAGGGCCAGGTGGATAAACAGTACGCTGGTTTGAAGGACTTGGCAGAAGAACGCAGGAGGAAGCTGGACCATGTCTATCATCACTTCCTGCTGAGCCGAGAGGTGGAGGATCTGGAGCACTGGATCGCTGAGAGGGACGTGGTGGCCTCCTCACAGGAGATGGGACAGGACCTGGACCATGTTacaATCCTGAGGGACAAGTTCCGTGACTTTTCCCGGGAGACAGGGATGGTGGGACAGGAGCGGGTGGACTATGTGAACCAGACGATAGATGAGCTGATCAAGGCGGGCCACACGGAGGCTGCTGCCATGGCTGATTGGAGGGACAGCGTCAACGAGAGCTGGGCTGACCTGCTGGAACTCATAGACACCCGAGTTCAGCTCCTACAGGCCTCCCACGACCTGCTCAAGTACTTCGATGATGGGAAGGAGCTGGTGTCTCAAATCCAGGAGAAACTAAATGAGATTCCTGCTGACCTGGGAGAAGACTTCAGCAAGGCAGATACCTTCCACCGCATGCACGCCGCCTTCGAGAGGGACATCAGCGCCCTGGGAAAACAGGTGCAGCAGTTCCAGGAGACAGCGGCCCGTCTGCACGCCCAGTATGCTGGGGACCAGGCTACAGAGATCCAGGCCCAGGAGAAGGACGTGGTGGAGGCCTGGAAGGCTCTTCTGGATGCCTGTGACGGCCGCAGGAAACGCCTGGAGGAGACAGCTGACAAGTTCCGCTTCTTCACCATGGTCCGAGACCTGATGGCCTGGATGGAGAGCACCATACAGCAAATAGAGACACAGGAGAAACCACGggatgtgtcaTCAGTAGAGCTTCTTATGAAGTACCACCAGGGGATCAGGGCTGAGATCGACCAGCGTGGACCAAAGTTCTCTGACTGTGTGGCGCACGGCAAGGCTCTGCTGGCATGCAAACACAAATACTCTGCTGAGATCAAGGAGAAACTGATCCAGCTgatggagaagaagaaggagatgaTGACCAAGTGGGACGACCGATGGGACTGGCTCAGGCTCTTGTTGGAGGTGTGCCAGTTTGCGCGGGATGCCTCAGTGGCGGAGGCGTGGCTAGTGGCTCAGGAGCCATACGTGGCCAGTAAGGACCTGGGACAGACTATAAACGAGGTGGAGAAACTACTGAAGAGACACGAAGCCTTCGAGAAGTCCACTGCCACCTGGGAGGAACGCTTCTCAGCCCTGGAGAGACTTACTACGttggaGCTGCTAGAGTTGaggaagcagcagcaggagataCAGCAGTTTGTAACAGAGGAGCAGAAGCGTTCACAGATGGAGAGCAGGAGAGAAGACACAGGATTTGCAGAGGATTCCTCCCAGCTCTACACCATCGAGGAGCAGACACTGTCTgcctctggagcagtggaggTGGAGCCCAGTTTGGGTCAGTTGGAGGGAACAGCGGGTGACTCTACAGTGCCCATGGTCTCCGAGATGCAGGATGCTAGCTCTCTGGAGCTGCTGGATGCCTCTGTGTCAGGACAGACCCCCAGGGAGGGGGAGCCCCGGGCCGCCACCCTACCTGCTGACCCCCTCAGCCCTAAGGCTGTGCTGCAGGAGGGCATGCTGGGACGGAAACACGATCTAGAGGCTGCTGGGAAGAAGGCTTCCAACAGGTCCTGGAACAACCTGTACTGTGTGCTGAAGCCTGGTCAGCTGTCTGTCTATAAGGACGCCAAGAGCTTCGGCCATGGCTCCACCTACCACGGAGAGGACCCTCTGTCGCTCGGCAACGCCAAATGGGAAGTCCTGAACAACTACAAGAAGAAGAAGCATGTATTCATACTGAGGCTGGGTGATGGTAGTGAGTACCTGTTCCAGTGTAAAGACGAGGAGGAACTGGGGCGTTGGACCCAGGCCATAGAGAAAGCAGTGAAGCCCCTGGCACAGGAAGAGGCGGAACCCTCAGGGTCTGCAGGGGTCCGGGCCCGCAGCCTGCCCCCTCCTTCCTCTTCTACCACCCTCACCACACCAGAGCCAGCGAAAGACAAGAAAGACAAGGAGAAGAAGGGCTTCAGTCGGTTTGCCAATAAAAAGTGAGGATGGACAGACTGACTATATTGCAGGTCTCGGGGCAGAAGAAGTTTTACTGTACAATCAGAATGAATTTGATCTTATAAAGATTTGCTTTTTTACTTTGAAATAGATGAGATATAGTTTAGATTTAAACCTCTGCTGCCTGTATTAAAGCCAGGGTAACAACATTTTTCTTTCTCTTTATGACAAAATATGCTCAATTCAAATAGCTAAATAAAAGCACAGGAATGCTCTTTTCACACTCAACCAAAGAATGTTTGTAAAATTCATTATTTTCCTTTTACAATTGTTTCCCAACTTTGCTTTAGATAAAAGCATGCTTGTATGATTTGTATTACAAACACAGTATGACTCATAAGAGTACTTTTGTTGATTCATCTGCCTTATATTCCTATAAAATGGTTGTGAATTGTTAtactgtggtttgaatttggtgctcttaTTATCATAGAATCATCAGGATTGGGTGGCTAGGCTTTTTAAAAGagctttgtaaattatgttttaACTAATGAATTGATAGGCCTAGTGTTGCCTGAAAGAGATTGAGACATTGTACAGTGCTGTACAGTACCTGCATGCACAGCAAGTACAACTGCAAGTATGCAAACTAATTGTCCTATGCACTGTGAAGGCAAAATAATGCTGCTGAAATTGgcagttatagactgttttaaCTGAGATAATGAAAGTAACACAATTGAAAGATGATTATGCTATCTTGTTATTGACCTGCTATTACCTTAAACATAACGCAATCACTTTCAAACATGACTTTTACCAGAACAATGGCCATCTCTGAGAACTTGAAATAGCTCATACCTAACACTTGTTTATCGAATCTCGAATTTCATATCtgttcatatacagtatataaaaaaaaatgcatgaatcatgttttttgtaatttttttgtgtggtgttcgggtctgtgggacccattttcaatgtttactcAAAGACATACttttttcaacctgagactcattggTCTTGGCTCATTTTCGgtgaagaacatgtaaaataacacattttcattgagtgcacactgtgcacccccctacacatgtatattatatatgtggtgTTTGGGTCCACAGGACCCGAGGGTAATAAAAGtatggaaaagtgtgtgtgtgtgtgtgtaggtgaaaagAAGTAAAAATTTAACAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2260194 lncRNA downstream 2572 34756308 ~ 34772312 (-) True G1977161
TU2260196 lncRNA downstream 18454 34755488 ~ 34756430 (-) True G1977163
TU2260199 lncRNA downstream 22761 34750529 ~ 34752123 (-) True G1977166
TU2260209 lncRNA downstream 32357 34742308 ~ 34742527 (-) True G1977175
TU2260198 lncRNA downstream 50593 34724052 ~ 34724291 (-) True rin3
TU2260272 lncRNA upstream 2105 34896077 ~ 34896628 (-) True G1977235
TU2260271 lncRNA upstream 3660 34897632 ~ 34898077 (-) True LOC110504231
TU2260274 lncRNA upstream 7483 34901455 ~ 34901658 (-) True G1977237
TU2260396 lncRNA upstream 72254 34966226 ~ 34967869 (-) False G1977345
TU2260397 lncRNA upstream 72254 34966226 ~ 34966578 (-) True G1977345
XM_036962474.1 mRNA downstream 35082 34715728 ~ 34739802 (-) False rin3
XM_036962475.1 mRNA downstream 35085 34715728 ~ 34739799 (-) False rin3
XM_036962730.1 mRNA downstream 74677 34699169 ~ 34700207 (-) True pth2
XM_036962383.1 mRNA downstream 332541 34292468 ~ 34442343 (-) False LOC110504230
XM_036962384.1 mRNA downstream 332541 34292468 ~ 34442343 (-) False LOC110504230
XM_036962881.1 mRNA upstream 3604 34897576 ~ 34912793 (-) False LOC110504231
XM_036962990.1 mRNA upstream 18938 34912910 ~ 34950168 (-) True LOC118944354
XR_005039447.1 mRNA upstream 65829 34959801 ~ 34961283 (-) True LOC118944135
XM_036962731.1 mRNA upstream 76093 34970065 ~ 35000444 (-) False LOC110505829
XM_036962472.1 mRNA upstream 222512 35116484 ~ 35141705 (-) True LOC110505831
TU2260072 other downstream 296326 34477620 ~ 34478558 (-) False G1977046
TU2258576 other downstream 1218073 33556430 ~ 33556811 (-) True G1975763
TU2258248 other downstream 1450559 33319729 ~ 33324325 (-) True G1975453
TU2256690 other downstream 2788000 31986443 ~ 31986884 (-) True G1974000
TU2256505 other downstream 3156385 31614421 ~ 31618499 (-) True G1973835
TU2260403 other upstream 76180 34970152 ~ 34971557 (-) False LOC110505829
TU2260406 other upstream 80821 34974793 ~ 34979507 (-) True LOC110505829
TU2260400 other upstream 133128 35027100 ~ 35100978 (-) False G1977346
TU2260401 other upstream 133128 35027100 ~ 35100978 (-) False G1977346
TU2260458 other upstream 159078 35053050 ~ 35056926 (-) True G1977392

Expression Profile