RNA id: TU2260403


Basic Information

Item Value
RNA id TU2260403
length 1406
RNA type TUCP
GC content 0.40
exon number 1
gene id LOC110505829
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 34970065 ~ 35000444 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAGGATTGGGATGCCTGCTGAGGAGAATTGGGATGCCTGCTGAGGAGAATTGGGATGCCTGCTGAGGAGAATTAGGATGCCTGCTGAGGAGAATTAGGATGCCTGCTGATAACACTTATGGTACTCATTACCCACTACACTAGTGGTGAATACTAAGTTATTATTATCATTCATGTATAATGTGTGCCTTGCCTTGGCACTTTGAGCAGCTTCTGGTTTCACTGCAAAGTATGTTTCTCATTTTTATTCAAGGAGTCTAATAAGACTAATTTGTGCCAgctgcagacagacagtcctcaTCATGTGATTGTAGCAgtcttattcactacagacagacagtcctcatCATGTGATTGTAGCAgtcttattcactacagacagacagtcctcatCATGTGATTGTAGCAGTCTTATTCACTACAAGGAAAAGGAAGCCAAGttaatgtttttatttgatttattcaaATAACGATCATTGTTATTTATGATATTAAAAAAAGGACATGTTTTAAACTAAAACGTAGATATCCTGTGTTGTATAAAGTTTAGGACAAGTCCAACATTTATGTCAAATAATATCATACTATTTATGTCAGTTtccctcctccagtacccccaacagcacacgttgttgtagccccggacaaacacacctgatttagtTAATCGagggcttgatgatgagttgacaagtttaatcaggtgtgcttgtccagggctacaataGAAATGCGTACTGTtgtgggtactggaggactggaggactggaggagggaaacACCGATTTATGTCATAAATATCCTATACCAAATCAATGTTTCAAACTTCCAAAGGATAAAAAACATGCGAAGAAGAATGTTGTCTTTGCTTTGTAATGACATGTTTTGTGCACTATTATTTCAAACAGTTAATGTATTGTTTGAGAACCGACCCCATTTTCTTTACTTCATAAAGATTCAATGAACACTCATTTAAAACCTCCCTCACCTAACATTGGTTCTACCTACTACACCCTCTCCCTTAGCCTGAAATCCAGAACCAGTTTTGTGCTGACATTCCACTCGttgtactctgtgtcattgtCAAGCATTGGCATGACAAGGAGTGGTATGATAGCAGAAACAGTGATACGCAGGCtacctctccccacccctctgcTTGTAATACACTGTGATATAACTAACTCATGCTTCCAGCACTACTACGCCTTGCATGCGCTGCCTACCGAGAAAAACAATCAACCAATCAGTGAAGTAAGCAGCATACCAGTTCCCATAATGCACTGTGATTGTCTGAAAGGGACTTATGTTTGTTGGGTAGTACCACATGTATTTTGGTTGGAATATTTCATTTGCTTAGTTTTCCCTTTCGTCTCATGATCTCGTTCACTCTTATCGTCCCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2260396 lncRNA downstream 2283 34966226 ~ 34967869 (-) False G1977345
TU2260397 lncRNA downstream 3574 34966226 ~ 34966578 (-) True G1977345
TU2260274 lncRNA downstream 68494 34901455 ~ 34901658 (-) True G1977237
TU2260271 lncRNA downstream 72075 34897632 ~ 34898077 (-) True LOC110504231
TU2260272 lncRNA downstream 73524 34896077 ~ 34896628 (-) True G1977235
TU2260404 lncRNA upstream 465 34972022 ~ 34972670 (-) False LOC110505829
TU2260411 lncRNA upstream 13938 34985495 ~ 34985987 (-) True G1977355
TU2260426 lncRNA upstream 34683 35006240 ~ 35006454 (-) True G1977370
TU2260429 lncRNA upstream 37953 35009510 ~ 35009751 (-) True G1977373
TU2260430 lncRNA upstream 38352 35009909 ~ 35010127 (-) True G1977374
XR_005039447.1 mRNA downstream 8869 34959801 ~ 34961283 (-) True LOC118944135
XM_036962990.1 mRNA downstream 19984 34912910 ~ 34950168 (-) True LOC118944354
XM_036962881.1 mRNA downstream 57359 34897576 ~ 34912793 (-) False LOC110504231
XM_036962963.1 mRNA downstream 76180 34774884 ~ 34893972 (-) False LOC110505825
XM_036962964.1 mRNA downstream 76180 34774884 ~ 34893972 (-) True LOC110505825
XM_036962472.1 mRNA upstream 144927 35116484 ~ 35141705 (-) True LOC110505831
XM_021585288.2 mRNA upstream 427831 35399388 ~ 35402421 (-) True LOC110505834
LOC118944372 mRNA upstream 530372 35501929 ~ 35503809 (-) True LOC118944372
XR_005039593.1 mRNA upstream 653109 35624666 ~ 35691185 (-) True LOC118944362
XM_021585291.2 mRNA upstream 862746 35834303 ~ 35848926 (-) False LOC110505835
TU2260263 other downstream 93971 34875385 ~ 34876181 (-) True G1977226
TU2260072 other downstream 491594 34477620 ~ 34478558 (-) False G1977046
TU2258576 other downstream 1413341 33556430 ~ 33556811 (-) True G1975763
TU2258248 other downstream 1645827 33319729 ~ 33324325 (-) True G1975453
TU2256690 other downstream 2983268 31986443 ~ 31986884 (-) True G1974000
TU2260406 other upstream 3236 34974793 ~ 34979507 (-) True LOC110505829
TU2260400 other upstream 55543 35027100 ~ 35100978 (-) False G1977346
TU2260401 other upstream 55543 35027100 ~ 35100978 (-) False G1977346
TU2260458 other upstream 81493 35053050 ~ 35056926 (-) True G1977392
TU2262487 other upstream 1240389 36211946 ~ 36216230 (-) True G1979142

Expression Profile