RNA id: XM_021585292.2


Basic Information

Item Value
RNA id XM_021585292.2
length 3126
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110505837
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 35876443 ~ 35880427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCGATGAGCCCTAGGCATACGACTCCTTTTTCTGTTTCCGATATCTTGAGTCCTCTTGAGGAGAGCTACAAGAAAGTAAGTATGGAGAATAACAACTTGGGGTCACCTCTCGCGTCGTACCGGCAGCCGCAGGTGTCTCAGGCGATGATGCAGCAGCACCACATGGGCCATAACGGGACGGTGTCCGCGGCATACCATATGACTGCGACGGGGGTGTCCCAGCTGTCACACACCGCAATGGGGGGCTACTGTAACGGCAACCTGGGGAACATGAGCGACCTGACGCCCTACCAGGACGGCATGAGAGGCAGCGCCACGGCTGCTGGCTGGTACGGAGCCAACACAGACCCGCGATTCTCCACGATCTCGCGCTTCATGGGCTCTTCTTCGGGCATGAACATGGGCAGTATGGGCAGCCTTGGCTCGCTAGTAGACGTGGGGAAAGGCATGGGCCCGCTCTCGAGCACCCCGAGAAGGAAGAGGCGCGTGCTATTCTCTCAGGCTCAGGTCTACGAGCTCGAGCGGCGATTCAAACAACAGAAGTACCTATCGGCGCCTGAGAGAGAACACCTGGCGAGCATGATCCACCTCACCCCGACCCAGGTCAAAATCTGGTTTCAGAACCACCGATATAAAATGAAGAGGCAAGCGAAGGACAAAGTGTCGCAGCAGCAGATGCAACAGGACAGTAGTTCCTGTCAGCAGCATTCCCCTCGGCGGGTGGCTGTGCCTGTGTTAGTGAAAGACGGCAAGCCATGCCAAGGCAGTGCCCACACTCCCACCACTACTGTACAGGCCCACCACCAACAAGGTGCCAATGTTATGATCATGTCCAGTAACGGTTCAGGCCTAGGTCAGCACCAGAGCCAACAGGTGGGTAGTGCAGATCACTCTCCAGACCTAGCACAACACTCTGCCAGCCCACCGTCTCTCCAGACCCAGGTAGCCGGCCTCTCTCACCTGAACTCCTCCAGCGCCGAGTACGGGACGGCCCTGCAGTGCTCTGCTCTGTTATATGGCAGGACATGGTGATCTGTTATGCAGCGGGACATGATGATCTGTTTATACGGCAGGACATGGTGATCTGTTATATGGCAGGACATGGTGACAGCCAGACAAACTATgatcacaaacacacatacaacactGCTCTCAAAGCTTTTTCAGCAAAGTCACTCAACAGACacgcaaacaaacaaaccaattgTACTTTGTGTACATTTTGAACAACACCATTTGGTGAATTTTAGTTCATGCTCTTCTAAAATGTAATTGGATATGAGGACAGTAAGTGGAGACGAAAGAAACTCGACAGATGAAGTTATGAGGATATGCGAGTTCAATCTTCGCTTTGAAGGTGGATTTCTTATTTCTGTAAATTATACTGAAGCTATACAGGGCTAGTCCTACATCAAGAGGTCATAGGCCCTACTCCTGTGTGTTGGTCATTGGGCTAAAGATCTCAATAGAAAAACTGTGGGTGCTTTTCAATTTTTTTCACAGAAGGCTCTGGTTTATAATAGAATTTAATGTAAAACGTAGCTTGTATATATTTCTGTAAAAGGTTTGAATTGAATATATAGTTTTTAGCAATCTGTTGTACAAAGTTTTTAGCGCTATTAATGGTTTGTGGTTGGTTCTTTGAGTTCCATCGGTATTTGTACGTTTTATTTACTTGTAACTTATATAGATAGATATTACTTAAATACAGCCAAACAATCCTATTAAtaaattatgataataaaattCATTCAGATCCATTTATTGAAATTGTTTTGTATACTGTTTCAGAGAATACATAGGCCTACGAGAAACCTTGTCAAATTATTTTCAGAAAACGAATAGGAAaattaatactataataataataataataataataataatattattattgtagtagtaataataaagaTGATGATTCTAATTATAATAATGCATGATATTGTCTATAGTCCACTTTAGCTTGTCAATTCAGTAAGTCTCAATTTAGACCGAAATCATTTTTTGCTGTCTTATTTATTATGTTAACTGCACACAATAATGGATTTTAAGCAATGCACGACTAATGAAAACCTCTTTTTGACCAGGTGTGATCGAAATCGTTGTTACTAAGTGTTGCTGTGTAGGTAGGCTAAATTGTTATTAGCCTAATGCTAACTTTTGCCTGAAAGAGCTTAACCCCAATTCCAGGCTATTTGGTCACGTTTATTATAGCTACAATCAACGGTTGTCTGTAGATGTGGTTCGTGGTACTCTGTGGCCGTTCCTACACAACGCGGCGCCTCACAAATCGTGTATTGTGTACACACTATCTCACTTGGATCACGCTGGGTAAACTCAGGCCAGGTCTTTGTGTGCACTCGGCGTCCCTTAGGTTCCTAGCGTTCTTACGTTCTCTGCCTGTTTCTGGTTTGGGTGAGTCATTTAGGTGAGGTCTCGAAGCGTTCTTTTTAACCCTGGAGATCAAACACGCGCTGACTAAAAGAACGTCTTATCGACCAAATCCCTTGCCAAACAACAGTATTCTTCTCAAATAACTTCGCAAGACAAATCGTCGTCTCTTATCAGAGGTAAGCattgtaaggtctgttgtattcggcgcatgtgacaaataacatttgatttgatttaagcaTACGTTTATCAATAATCGATAAATCAACTGGGGTTGAAATGAAAATAGCGTGCAGTCTTTCATTTTAGAAGTTTAATGTAATTTGCTTATACCAAGTGGGATGACACGGCCCTGGCTCGTCAAGTTAGCATTTGCATGCGGTGGAGAAGATATTTTGTGGTTTTTAATTGATTCGAGAATGTTTTAACATATAAATGGTACATTTCAAATGAATTGTGTGGGACGGACCCATAGGTCCATTGTGTGGGACGGACCCATAGGTCCATTGTGTGGGACGGGCCCATAGGCCCATTGTGTGGGACGAACTCTGTGTTCTTGTAATTTAGTTGTAATGTAAAGGACTTGCAACTATTTTGATAGTATGgtattatacactgagtatacaaaacaggtgaaagctatgatcccgtattgatgtcacttgttaaatccacttcaatcagtgtagatgaaggggggagacaggttaaagaacgatatttaag

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09342 NKX2-1, TITF1; homeobox protein Nkx-2.1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2261102 lncRNA upstream 57509 35818726 ~ 35818934 (+) True G1977988
TU2261100 lncRNA upstream 60427 35815815 ~ 35816016 (+) True G1977986
TU2261097 lncRNA upstream 66797 35809418 ~ 35809646 (+) True G1977983
TU2261094 lncRNA upstream 69484 35806617 ~ 35806959 (+) True G1977980
TU2261066 lncRNA upstream 129041 35746933 ~ 35747402 (+) True G1977953
TU2261178 lncRNA downstream 43024 35923451 ~ 35923730 (+) True LOC118944336
TU2261201 lncRNA downstream 61567 35941994 ~ 35944180 (+) True G1978063
TU2261211 lncRNA downstream 74753 35955180 ~ 35955379 (+) True G1978073
TU2261212 lncRNA downstream 75425 35955852 ~ 35956065 (+) True G1978074
TU2261220 lncRNA downstream 85979 35966406 ~ 35966722 (+) True G1978082
XM_036962865.1 mRNA upstream 9656 35864570 ~ 35866787 (+) True LOC110504235
XM_036962700.1 mRNA upstream 264742 35539797 ~ 35611701 (+) False LOC110504234
XM_036962702.1 mRNA upstream 264742 35539797 ~ 35611701 (+) False LOC110504234
XM_036962703.1 mRNA upstream 264742 35539797 ~ 35611701 (+) False LOC110504234
XM_036962701.1 mRNA upstream 264742 35547037 ~ 35611701 (+) False LOC110504234
XR_005039580.1 mRNA downstream 40448 35920875 ~ 35923934 (+) False LOC118944336
LOC110504338 mRNA downstream 214042 36094469 ~ 36097074 (+) True LOC110504338
XM_021585298.2 mRNA downstream 220857 36101284 ~ 36112211 (+) True LOC110505842
XM_021585297.2 mRNA downstream 231930 36112357 ~ 36120256 (+) True LOC110505840
XR_005039523.1 mRNA downstream 239963 36120390 ~ 36142702 (+) False LOC110505839
TU2259645 other upstream 1145132 34730027 ~ 34731311 (+) True G1976689
TU2259636 other upstream 1172549 34701980 ~ 34703894 (+) True G1976680
TU2259521 other upstream 1394522 34481519 ~ 34481921 (+) True G1976575
TU2259520 other upstream 1395164 34480904 ~ 34481279 (+) True G1976574
TU2259519 other upstream 1395546 34480030 ~ 34480897 (+) True G1976573
TU2261218 other downstream 146106 36026533 ~ 36027737 (+) True G1978080
TU2261421 other downstream 508844 36389271 ~ 36395216 (+) True LOC110505847
TU2261886 other downstream 1337834 37218261 ~ 37222036 (+) True LOC110504241
TU2261916 other downstream 1384353 37264780 ~ 37310451 (+) True hivep2b
TU2263557 other downstream 1840707 37721134 ~ 37729904 (+) False G1980026

Expression Profile