RNA id: XM_021585298.2


Basic Information

Item Value
RNA id XM_021585298.2
length 2942
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC110505842
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36101284 ~ 36112211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACTGCGCCCCCTTATTAGTCAACTAGTGTATCTATAAATCACTGGTTGTCAGCAGTCAGGTTGTTTCGGTGTTCTTGACCTCCTAAAATGGCTGGTGTTCGAGCCCTGGGTGCGCTGTCCAGAATTACAGCAAGGAGATATGTCCTCTCAGgtATCTCATGCCGTACCTTTTCAGTTGCCCTTGCCATGTCAGCCCGAACCCATGTCAACTATGAAGTGAAAGAGGATGTGGCGGTCATTCGGATGAATGACCCAAATTCTAAgGTCAACACTCTGTCGGTCCGGATGCAAAATGAGATGATAGAAGTATTTGATGAGGTCTTGGCCAACGATGCAGTCCAGAGTGCTGTCCTCATCTCTTCCAAGCCTGGCTGCTTCATTGCAGGAGCTGACATCAACATGATCCAGGCCTGTAACACCTCCGAGGAGGTCACAAAGCTATCTCAGGAGGGACAGAAGATGTTTGAGAGGATTGAGAAATCGCCCAAGCCCATTGTTGCGGCCATCAACGGCTCCTGCTTAGGAGGAGGCTTAGAGTTTGCCATCGCCTGCCAGTACAGAGTTGCTACTAAGAGTAAGAAGACCGTGCTGGGAACCCCTGAGGTGATGCTTGGTCTTCTACCTGGAGCTGGAGGAACACAGAGACTCCCTAAGATGGTTGGTATTCCTGGTGCCTTTGACATGATGCTGACAGGAAGAAACATCAAGGCAGACAAAGCCAAGAAGATGGGTCTGGTCCATCAGCTAGTGGACCCACTAGGACCTGGATTGAAGAGTCCAGAGGAGAGGACCATTGAGTACCTGGAGGAGGTTGCCATACAGTGTGCCAGAGGAATTGTCCACAAGAAGATCTCTCTCACCAAGAAGAAAGGCATGATGCAGAAAGTCCAAGACTACGTAATGGGCATTGCGTTTGTGCGGCAACAGATCTACAAAAATGTTAATGGCAAAGTCATGAAGATGAGCAAGGGACTGTATCCTGCCCCCTTGAAAATCATTGAGAGTGTGAAGACTGGCTTGGAACAGGGCCCAGATTCTGGCTATTTGGCAGAAGCACAGAACTTTGGCAAACTGGCAATGACTTCTGAATCACATGCCCTGATTGGACTTTACCATGGCCAAGTGGCATGCAAGAAGAACCGCTTTGGAGTCCCTGAGAGACCGGTCAAGAACCTGGCTATCTTGGGGGCAGGTCTGATGGGTGCAGGCATTGCCCAGGTGACTGTGGACAAGGGCATCCACACTGTCCTGAAGGACACCACCGTGGAAGGGTTGAGCAGGGGTCAGCAGCAGGTCTACAAAGGCCTCAATGACAAAATCAAAAAGAAGGCCATCACGTCATTTGAGAGGGACTCCACACTGTCCAGTTTAACTGGCCAGTTGGACTACAGTGGTTTTGAGAAGGCTGACATGGTCATCGAAGCTGTGTTTGAGGACATCAACATCAAACACAGAGTCATCAAGGAGGTGGAAGCTGTGATTCCACCTCACTGTATATTTGCCACCAACACGTCTGCTCTCCCCATCAAAGATATTGCTGCTGCTAGCATGAGGCCAGAAAAGGTTATTGGTATGCACTACTTCTCTCCAGTGGACAAGATGCAGCTGTTGGAGATCATCACGACCGATAAGACCTCTAAAGACACCACTGCCTCTGCTGTTGCTGTAGGCCTGAAGCAGGGGAAAGTCATCATCGTTGTTGGAGATGGACCTGGGTTCTACACCACCAGGTGTCTGGCTCCTATGTTAGCTGAGGCAGTGCGAGTACTACAGgagGGTGTTAACCCCAAGAAGCTGGATGCCCTGACCACAGGTTTTGGGTTCCCAGTGGGTGCAGCTACACTGGCTGATGAGGTGGGCATTGACGTGGCTGCCCATGTGGCTGAGGACCTCGGCAAAGCATTCGGCTCCAGGTTCGGCGGTGGAAACGTTGACGTGCTgaagaccatggtggagagaggaTTCAAGGGCCGCAAATCAGGAAAGGGCTGCTACGTGTATACGCCAGGACTCAAAAGCAAAGATGTCAACCCCGATATTGACGACCTCCTGGAAAAATTCAAGTTGACACCAAACCCTTCAGTGTCTTCAGACTCTGATGTCCAGTACCGTCTGGTCTCGCGGTTTGTGAACGAGGCAGTGATGTGTCTGCAGGAGGGGATCCTGAACGGCCCTGTAGAGGGAGATATAGGCGCTGTGTTCGGACTGGGATTCCCCCCCTGCCTTGGAGGTCCTTTCCGGTTTGTGGATACCTTCGGTGCCGATAAGCTagtagagaagatgaggaggtatgaggaggtTTATGGCAACCACTTCACCCCCTGTCAGCTACTGCTGGATCACGCCAAGGACTCCAACAAGCGATTCCACAAGTGACTTTCATCATCTACTGATACCATCTAATAGCAGGCTGCCATTAGAATGTGCCTAGGCTGTGTATTTGTCTGTTAACTTAAGCTCAGTGCTTATTTCTTTAAAGTTTGCAGAAGAGAAATCATGAGGGGCCTGTTTTTACAAATCACAAAATGTTTCAAGTTCATAACTAACAGTTCTTTTTTTGAggggtgttttttttatttttatgttttaacATGATTTGAAAGTTCCCTTTTTTTTATAATATTCTGCTGTAATATCCATCTGAGGCAGGTGTAGACCCAACTGGCAATCCTAGTCTTCTCAATGTAAATTTAAATCCATGTCTTCATCTCAAAAGtggactccttttgaccaggatcactacatagggtgccatttcagctTTCATAAGTGACCAGTCTTGGGCTGTTCAGTCATGTTTATTCATCTGAGGTGAatgtttcttttctttttttttttacatttatgatttttttttggtCTTTATGCCATGGTTTGGGTAGTGATGTATGTCATATTTAGAGCCAGTAAATTAATAAATAATGATATTGAAGTACATTCA

Function

GO:

id name namespace
GO:0006635 fatty acid beta-oxidation biological_process
GO:0016507 mitochondrial fatty acid beta-oxidation multienzyme complex cellular_component
GO:0050662 obsolete coenzyme binding molecular_function
GO:0004300 enoyl-CoA hydratase activity molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K07515 HADHA; enoyl-CoA hydratase / long-chain 3-hydroxyacyl-CoA dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2261219 lncRNA upstream 72642 36028113 ~ 36028642 (+) True G1978081
TU2261217 lncRNA upstream 76246 36021808 ~ 36025038 (+) True G1978079
TU2261250 lncRNA upstream 80997 36017173 ~ 36020287 (+) False G1978102
TU2261251 lncRNA upstream 82453 36018101 ~ 36018831 (+) True G1978102
TU2261245 lncRNA upstream 84188 36016262 ~ 36017096 (+) False G1978102
TU2261330 lncRNA downstream 108545 36220756 ~ 36221108 (+) True G1978181
TU2261405 lncRNA downstream 247493 36359704 ~ 36359947 (+) True G1978249
TU2261450 lncRNA downstream 321926 36434137 ~ 36434672 (+) True G1978280
TU2261501 lncRNA downstream 379840 36492051 ~ 36492958 (+) True G1978312
TU2261563 lncRNA downstream 595288 36707499 ~ 36708827 (+) True G1978368
LOC110504338 mRNA upstream 4210 36094469 ~ 36097074 (+) True LOC110504338
XR_005039580.1 mRNA upstream 177350 35920875 ~ 35923934 (+) False LOC118944336
XM_021585292.2 mRNA upstream 220857 35876443 ~ 35880427 (+) True LOC110505837
XM_036962865.1 mRNA upstream 234497 35864570 ~ 35866787 (+) True LOC110504235
XM_036962703.1 mRNA upstream 489583 35539797 ~ 35611701 (+) False LOC110504234
XM_021585297.2 mRNA downstream 146 36112357 ~ 36120256 (+) True LOC110505840
XR_005039523.1 mRNA downstream 8179 36120390 ~ 36142702 (+) False LOC110505839
XM_021585293.2 mRNA downstream 8179 36120390 ~ 36150603 (+) False LOC110505839
XM_021585294.2 mRNA downstream 8179 36120390 ~ 36150603 (+) False LOC110505839
XM_021585295.2 mRNA downstream 8179 36120390 ~ 36150603 (+) False LOC110505839
TU2261218 other upstream 73547 36026533 ~ 36027737 (+) True G1978080
TU2259645 other upstream 1369973 34730027 ~ 34731311 (+) True G1976689
TU2259636 other upstream 1397390 34701980 ~ 34703894 (+) True G1976680
TU2259521 other upstream 1619363 34481519 ~ 34481921 (+) True G1976575
TU2259520 other upstream 1620005 34480904 ~ 34481279 (+) True G1976574
TU2261421 other downstream 277060 36389271 ~ 36395216 (+) True LOC110505847
TU2261886 other downstream 1106050 37218261 ~ 37222036 (+) True LOC110504241
TU2261916 other downstream 1152569 37264780 ~ 37310451 (+) True hivep2b
TU2263557 other downstream 1608923 37721134 ~ 37729904 (+) False G1980026
TU2264448 other downstream 2416396 38528607 ~ 38529105 (+) True G1980792

Expression Profile