RNA id: XM_021585295.2


Basic Information

Item Value
RNA id XM_021585295.2
length 7363
RNA type mRNA
GC content 0.46
exon number 13
gene id LOC110505839
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36120390 ~ 36150603 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATTTACTCGGTAAAATtctattttattatattatatttgagtCTGAGCACCCAATCTCCCCAAAATGTTCTAATTTTCTCACAGTAATTACACTATTAATTATTGTGAGAAAATAACggtattattttttatataacAAAGATCATCTTTAAGATGTAAAACAAATGTGTATTCTATCAAAATTCCAGTGTTTAGTGACAGCTCCATTTGTACAGTAAGATGACATCTCTCTCGGGGTCACATGACACTCTCCTTACAGTAAAATACCAATATGGCAGAAGCGGTGGGTCTTGCGCGGTAACTAAAGCAACATAACACAGGAGCACACTGTCAAATTCAACACTAATCAGTACAAGACCGCAGcgatgagggagagacagaagaaaaAGAAGGGGAGGACATGGGCAGAAGCTGCTAAAACGGTATTGGAAAAGTACCCGAACACACCCATGAGCCACAAAGAGATCCTACAGGTGATccagagggagagactgaaagagatcAGAAGTGGTACTTCCCCGCTGGCATGTCTTAATGCTATGCTCCACACCAACTCTCGCAGTGAAGAAGGGATCTTTTACAAAGTACCTGGACGAATGGGGGTCTACACACTGAAGAAGGACATTGGGGACGTGGTGAAGGAACTGTCTGAGGAGGGGTCGGATGTGAATGAGCTGTCTGAGGGGTCAGAGGAGCTGTCTGAGGAGGGGTCGGAGGTGAAGGAGCTGTCTGAGGAGGGGTCGGAGGAGGGCGGTAGTGATAATCTGTCTGATTCCCAGAGAAGCACAGAGAACAACAACTACAACGCTAACAACCAGGAGGGCAGGAggggaaggtggaggaggagagGGCCTTCCAAGCTGCCGCCCGATCCGTTGTCTCCTCAGCCACGCTGttcatctccctctgtccccagcAGCAAGCTCATCTCTCCTTCACAGAAACACTGCAAGAAGGCCCTCAAACAGGCcctgaagcagcagcagcagaggaacCAGCGGAGACAAGGGGGCATGCCCACAACCTCCAGCCCTAGACTACTGCTTAAGACTGACACCATTGCCACTAAGTCCGACTCCTGTCCTGCTGCTGGTACCAGGAAGATGTCCCAGAGGTCCAGTCGACTCAGTGCACAGTGCCAAGAGAGGCTACTGACGCTACTGCCTGAGGTCGACCAACAGgCCTGTATGGATGGTCTGTTGAAGGTAACCAGTTCTGCCTTAAACAATGAGTTTTTCACATCAGCAGCTCAGTCCTGGAAGGAACGACTGGCTGAAGGTGAGTTCACTCCTGAGTTGCAGCTGAGAATGCGTCAGGAGATTGAGAAGGGGAAGAAGGTGGAGCATTGGAAGGAGAGCTTCTTTGAGAACTACTATGGTGAAAAcTCTGGACTCAGCTTAGAGGAATCCAAAGAGCTGCTTGAGTCTGGTCTCAGTTTGGAGCTCTCAGCCACCAAAGCCCAGTCGTCTCCTCCATCACAGCCACGTCCTGCTGGCCAAGTACTGCAAGACACCAAGATCCCATCGAACAGCTGCCAGACTCGCTCTTCAGAGAGGAGGCTCCGATCATCATCACTGCCCATAAACCCGACATTTAAACCCATAGAACCTACCAAGTCAAGGCCAGAGCCTGTTCAAGAGGAAACAGTAGCAGTCCCACCTGTTGTACTACCGGTGCTGCCAGCAAAGATCGTTCAGAAGACACTGGAGGTTGAGTACCCCAGACACAGGACTCGTAGTAGAGGTTTATCCCTACCTATAGTGGCAGTGGAGGCAGCTCTTGTGCGGAGACATGATGTGGTGGATTCAACCTCAACGGTTACTCCACTTGGAGAGAAGCagaaggaggaagatgaggagcagGATTTGAAAGAAGCCCAGCCAGACACCCCCCAGTACCCTGAGATCCCCCCGTCCCCTGAGATCCCCCCGTCCCCTGAGATCCCCCCGTCCCCTGAGATCCCCCCGTCCCCTGAGATCCCACCATCCCCTGCCCAGGAGAGTCCTCCAGAGGTCTGCCCCCAGATTAAGCTCAGTTCATCACTGCCTATCGACCTTCCAGAGCCTCTGGGCGTGGACAAGcatagtggggagaggagggaagatgtTGACGTTacaccagagagaggagcctcAGCCCCTGTGTCAGTCACCTCTGTATCCGCCCCTGTATCCACCCCTGGAACCACACCTGTACCCACCACACCATCCCCGGAGCCGTTGAAAAGGAAGTCCTCGTCCAGTGAACAGGAAGTAGAGCTGACTCCAGAGAAGAGAGCCCGCATCACTCCACCAGCAGTATCTGTGGTAACCTCTCCAGCAGCCACAGTAACAACAGCACAGAGAGTGCCTCCGCTTCAGATTACTGTGTCGCAAATCCTATCAGTCCCAGCCATTGCGTCTCCAACCCAGGTGTCCCCTAggactcctctccctgtctccctcagtCCTAGTCCTAGCCCTGGTCCTAGCCCTGGACGCATTGGTGCTCGCACTCTGGCTGACATCAAGGCTAAAGCCCAGCTAGCCCGGACCCAACGTGCAGCAGCAGCTGCAGCGAGCTCCTTCTCTAAAGGTGCAGTACCAGGCCCAGGACCAGGAGGAGGCAGTGGAGAGCAAGGAAACCATAGAGCTTCAGCCCAGACCCTCCACTCCagaccctcctcctccacccaaaGCTCCACCCAATCTCAGTCAACCACCAAGTTGCCAGCAAGCAGCACCATTGGTCAATCTACCTGTCAATCACCCGATGCAGTCACCACACCAGCCCACTCCAGTTCTGTCCAATCAGGCTCCTCTGTGCCCTTTGACCTTAGCCTGTCTCAAAGATGCTCCAACACCAGCAGAGCGTCTCTCACTGATGACCGACAGAGAGGCTACTCTGCTGGTAACATGAGCCCAGGTTTTCTGATGAGGCCTCAACATGGGAACACTCAACTTATATCACACCCATCAGGTCCCCAGTCAACCTCTAGCCTCACTTCATCTGTGTGTGATGTGAAGAGCCAGTATGTATCTGGAGGCTCCATGGCAGCCAGGGCTAGCCACTTCATCCCAGCCAACAACCCCCTGGTCACGTCTCTCCTCCAGGGGAAAGAGGTCCCTCTGGAACAGATCCTCCCCAAGCCGCTGGACAAGGCAGAGGTCCAGCTgacccaggccaaaccctcccatgATGACAAATGGAAGATAAAGTCCCACAGCACAGCTGGGACAGCCAGTGGTGAAAGCCAGAGTCAGTACCTGCACTCTGGTGGTGTGGAGGACAACAGTAGATCCAAACAGCAAGGATCTATaggcccctccccctccaccataCCTGGAACAAGGGCAGGTAAGTTGGCAGAGCTCCAGCACCATCAAAGAGAAACACCTAACAAAGACATCCAGGAGCAGATCCTCAGGGCTCTGATGCAGAGGGCCACCCAGCAGCACCAGAACCAGCTGTATGGGGTCTCAAGCGAGGCTCAGCGTGCCCAGTTTGGAGCCTGCAATCTAGGGCACCAGGAGGAGTGTGGGGACCATCCCCGGTTCTCCGCGGGGTTCCCTGGAAGGAAGAGGATGTCCAGGCCTGCCATGTCAGGGCACTATCTCCTCAATGTTTCCACGTACGGGCGAGGCTCAGAGAGCAGTAAACGCTCCCACCCATTGGCTACCGCCAACACCTCACTGACCCCTCTGGCCAATCtgaagagagaacacacagagggagaggagctggCTAACGATGGGGAGGAGTCCGTGGAGAATAAGCCTCATTCTCATTCTAACTCAGCCGGAGGAGTCAAGATGGAACAGCAGGGCTTCTCAATCACAAAAATGGGTGAAGCTCTGGGCTTTCAGCGCTGTTCCAGGATAAAGTCTGAGTCTCCATCGGTGGAGGGCTGTCTACCGGAACGGAAGGACTACAGTTTAGccagtacagagagagacagtggcacTTCTGCAAGAGCCAAAGAAACCAACCTTTTCACCCAATCACAGCACAGGAGGCACCTGGAACTTTGCAATAGTAAACAGGGTGGTCATTCTGAGCCATATCGGGTATCTGTATCTCCCCACATGGGGACCGTGGACCCCAGTCACACCAGTACTTACCAGCATCCGTCTGCCTTTCAAACCCAGAGACCTCCAATCAATAATCAGGAATCCATGGTGGGGTCCTGCTACAGTGGCACCATCAGCATGTCTGTACCTCACACTCTGAGTCTGAACCACAGTGCTGCTGTTTCAGGTAGCGCTTCCAgcacctccctctctgtgtcaggTAGTGGTGGGGACAGCGGCAGTGGCACCGGCAGTGTCATGTCTTTCTCAGTGACCGTCACTACCATACCTGCCGGTCGCCCTTTGGACCACATAAACCAGGGGGAGGGGTCTCCAGAGCAGGGGTGTATGGAGGGATCTGGTATAGAGGACGTTCAGTCGAAATGCTACTGCCGACTCAAAGCTATGATCATGTGTAAAGGGTGTGGGGCCTTCTGCCATGACGATTGCATTGGCCCTTCGAAACTCTGTGTCTCATGTCTAGTGGTACGATAAAACGAATGTTAGAAATGTAGAAATGATTTGTTTCAAATCTTTATTGTTGCACCAAGGAACAAGTCAGCATCAAGTAATCTACCATTGTCAAGAAGTAGTTaccagcagggttggggtcaattcgatttcaattcaggaagtaaactgattTGATTTCCGATTCTAATTTTCTCACAGAAAAAAGGGGGAATTGCAAAGTCAGTTTATTTCTTGAATTGATTAAATTGAAGTGGAATTGACCCGAACCATGGTTACCAGGGTAAAATGCACAGTGGCCATACTAAACCCAACCCATGGTTTTCAGTGGGGAGGCAAAGCATTTACGCTAGACGATCATAGTCTTGTTTAATCTGTTCCATTTGAAAAAGGCTGGTTTGTTTTGGGCAATGCAAATCAAATCTGCACCTTTCAGACTAGGAGACATGTTGAATCTTGGCAATACTTTGCACTTGGACATGTTATTGTTCTATATTTTTGTAAAGATAGTTTAGATTTTTAAAAGGAAAGAAAAAAATGAATGTTGCTATTTTTGTAGAACGTAATAACACTGTTGTTATGTTAAAGACGGCCACTCCTTGTTGTGGAGTTTACGTTATGATGTTTTAAAAGGTGAAGAAGGGAGTTCAATGGGGTTTGCGTGTAGTTGAGGGAGTACAAATATACTGATTTATATCGATTTTAAAGGTTGCAATCAATcatttacatatttacagtactagAAACAGTCTTACAGATATATAACAAGAGAATAGATATttgaaattattattttgattataaaaaacatgtCACAATTATTGCACTTAGCTTTTCTAAGTACTAACACTTACTGGGCAAAGGACTTGAATGACAGCTCTACTGTTtgtatactgtacactatacatGTAGTGTACACTGTACATGTAGTGCACACTATACAAGTAGTGTACAGCCTTCGTACTCTAACATGGTGTTGAAAAGTTAAAGCACTTCACTGATAAATAGTGCCCTTCGAGGAGCAAGCTgagtagcctggttccagatctgtttgtattgttttatgacagTGGCCATAGGAGTACTAACAGTACTAACAGATCTGCGGCAAGGCTACGAACTAAGATCTTTCCCATTTCAGTCTAAGGTCATTGGTGAAGTTTTACCGACACCGTGAACCTTCATTAAACCTCGAACTGAAAGATATTCTGTCTCATTATGTTTCATACGTGGATGCTTGTTTGTGGATAGCAACGTAACCATTAGCCCTGCTGTACAGTTAAAACACTCAGAGAAAGAAGGgagtaaaatgtattattattttgctTTGTAAATATTGTCTTTAAGCTATATTTAGAAATGAATTCTCTATCTAAGCTTTATGTACGTTGCTTAAGCATATCCAACATTATATCCAATGTTATATGTTTTTATTGCAAAACAGTTTATATCTCTAAAAGAAACTACGCAAAAATGTGTATTTAAACGCTAAATGCTGTACTATCAAGAAACCATTCAAAGTATAGGTGATAGAGAGGTACAGTTTACTACATATAAAGCAAAGGCACATAATATTGGTATGCATGGTGATTGCAATTATAAAATCTAAATGTATCAATCACATTTTTGAATGATCTGACTAAAACTAAAGATAGTTGCTGAGTACCGTATATTTTATAGAAATAATTTCCATGGTAACATGCCAAAGTCACCTCATGAAAACTAAAAGATCAGATCTCGTTTTTTAAAATGTCTGACTAGTTAAAGAAATTAATATATTTTAAGTCATATATTTTAATATAAAAAATCTATttacaaatctttttttttttaagaacagggtattttttttaaacgtttttgTTTGAGTGGACAGACCAATTACTTTTGTAACAAAAAAAATCCCCCGGTTTTCTGATTCTGTATGGCCTTTTCCACTGAAGTCCTGCCTGGAATAATTTAACCCTCTGAACTGAATGCTCTTGTAATGACTTTGGTTAATAAGGGTCTTTGTTTTATGTCTTACACATATTTTCTGCATTAACTATGTGCTTTATTTAGGGAAAAATTAATGCCTGTAAATTAACAATACAATTTCATGGCACCGTTTGTAAGTGGTCGGTGGATTGGATCCAggccctgtgtgtgcgtgtgtgtcacatGATTCTCAAAAGGTTCGAAGTCTAcgtctcaaatagcaccctattcctttatAATGTTGGGAATAGGGCGCCAATTGGGAAGCAACCAAATGATTCATAAATGGAGGGTTCATATTTTGTAAGGATATAAAAGAGACCTTATATTTATGATTTCCCCTCTTATCGTTGCAAACTTTTTAATTAAGTTTAGTATTGAGTAAAAATGGTTTTAAAAACAACAAAAGTTCTGTTGACTGACTTGTGATGGTGACTGGATTGCAAAGAGAAAGTTGTTTTTACCTACAGTACATTTTGTAAACAGGCAGCTAACGTCTTTATTGATGAATAATTGGTTTAGTAGCCTACTCAACTTTGTCCTTTTTCTCAAACCTTGATtgacttttttttaaagcaattGATAGCCTAAATTCAGAGGGATATATTGATTAGATTAATTTTGAAACCTAAGGACAACAAATAAAGGTTGAGGATAGATTTGGAGGAAAAGTGTTTTCTAAGTGTCATCGGGCAATCAATAATGGTTTGAAaatatctgtctgtttgtcttgtGAAGGGTGCAGTCCCATCAGTCTGTGTCATTTTTGCGGTTTTTAGATTTTAAACTCTCCATTTTTAAATGCAGGTGAATGTAATATAGTAATCAGCACTTGTCAACAAAGAATAAATAACAATGAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2261219 lncRNA upstream 91748 36028113 ~ 36028642 (+) True G1978081
TU2261217 lncRNA upstream 95352 36021808 ~ 36025038 (+) True G1978079
TU2261250 lncRNA upstream 100103 36017173 ~ 36020287 (+) False G1978102
TU2261251 lncRNA upstream 101559 36018101 ~ 36018831 (+) True G1978102
TU2261245 lncRNA upstream 103294 36016262 ~ 36017096 (+) False G1978102
TU2261330 lncRNA downstream 70153 36220756 ~ 36221108 (+) True G1978181
TU2261405 lncRNA downstream 209101 36359704 ~ 36359947 (+) True G1978249
TU2261450 lncRNA downstream 283534 36434137 ~ 36434672 (+) True G1978280
TU2261501 lncRNA downstream 341448 36492051 ~ 36492958 (+) True G1978312
TU2261563 lncRNA downstream 556896 36707499 ~ 36708827 (+) True G1978368
XM_021585297.2 mRNA upstream 134 36112357 ~ 36120256 (+) True LOC110505840
XM_021585298.2 mRNA upstream 8179 36101284 ~ 36112211 (+) True LOC110505842
LOC110504338 mRNA upstream 23316 36094469 ~ 36097074 (+) True LOC110504338
XR_005039580.1 mRNA upstream 196456 35920875 ~ 35923934 (+) False LOC118944336
XM_021585292.2 mRNA upstream 239963 35876443 ~ 35880427 (+) True LOC110505837
XM_036962289.1 mRNA downstream 812 36151415 ~ 36212745 (+) False LOC110505843
XM_036962290.1 mRNA downstream 813 36151416 ~ 36212745 (+) False LOC110505843
XM_036962287.1 mRNA downstream 815 36151418 ~ 36212745 (+) False LOC110505843
XM_036962286.1 mRNA downstream 816 36151419 ~ 36212745 (+) False LOC110505843
XM_036962300.1 mRNA downstream 818 36151421 ~ 36212745 (+) False LOC110505843
TU2261218 other upstream 92653 36026533 ~ 36027737 (+) True G1978080
TU2259645 other upstream 1389079 34730027 ~ 34731311 (+) True G1976689
TU2259636 other upstream 1416496 34701980 ~ 34703894 (+) True G1976680
TU2259521 other upstream 1638469 34481519 ~ 34481921 (+) True G1976575
TU2259520 other upstream 1639111 34480904 ~ 34481279 (+) True G1976574
TU2261421 other downstream 238668 36389271 ~ 36395216 (+) True LOC110505847
TU2261886 other downstream 1067658 37218261 ~ 37222036 (+) True LOC110504241
TU2261916 other downstream 1114177 37264780 ~ 37310451 (+) True hivep2b
TU2263557 other downstream 1570531 37721134 ~ 37729904 (+) False G1980026
TU2264448 other downstream 2378004 38528607 ~ 38529105 (+) True G1980792

Expression Profile