RNA id: XM_021585305.2


Basic Information

Item Value
RNA id XM_021585305.2
length 2729
RNA type mRNA
GC content 0.47
exon number 13
gene id LOC110505848
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36396400 ~ 36405233 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGTGGTGTTTTAAGGAATGTTGAATCATATTTCGTTGTATATACATGCTCAGAATGAAACAAAGGAACGTGCAGTCCACTGGGCGAGAACAGTAATGTCACGTGGCGTCTTAAACTCTCCATTCACTTTACAGGTAATGCCTTGGCACTGGTAGGCAGGTGCATATCTTTCTTTGTTCCAGCAGAGACACGCAAATACATGGCTTGTGAAGACACTACCACCTGAGCACTGCTACTGGAATTCAACGAATAAGTAACATATAGCCTGTATACATTGTATattaacaatatatattttttatactatAGTGAATGAATGTTGATTTCACTTTGCTTTGGAGATGGCCACCGGACTATGTGAAAAGTGTGCACAACTGCTAACGGACTTCGTTGCTTATGTAAAGAGATTGCCGTCTGAACTTGTACAGAAGATAACGGAGTGTATAAAGAGCCTGTCAAGATGTAGCTGTCTGCGGAAGAAGAGAGCAACTGTTGCATCCTATATCTCAGAGCAGCACGAGAGACAGGCTGCTCGGACACTACTGAACCACCTGGACACAGTGGATTATCCTCTACCCGTTACTCTCCTGGAACCATACACAGCCCTACTCCTCTCTAATGACATGGAGGTTCAGAGGATCACCACTCTGTCTCTGGTTCATCTGCTAGTGAAGAACAAAGTGAGTAAGGAGCAGGTGATTGAGACAGGGATGCTGATGCCCCTGCTAGAGATGCTCCAGTCTGGGGACCCCACTGTCCAGTGTAACTCCTGCCAATGTATTGCCTCACTGGCCTCCTCAGACTCAAACCGGGAAGCTATTGTGTCAGCTGAAGGGGTGATTCCACTACTGGTTTTAGCCAAGTCTTACGATCCCCAAGTCCAACAGAATGCAGTCTGGGCCCTTTTAAACCTCACACAGTCTGAGAGGACGATGGGGGTGTTATGTCAAGAAGGAGCCATTCCTGTACTGGCACTTCTGTTGCAGTCCTCCAACTGTGAGGTCCAGTTCTACAGCTGCTCTGCCCTGAGCAATATAGCCACTGTCCCGGGCCATCATCCCAAAATGTTGGGCATTGGAGACCGTTTTTTGTTGAAGTCTCTGCTGACACTCATGTCCTCATCAGTGCAGAAGAATGCATCCCAAGCTTGCAGATGCCTCCAAATCCTTTCAGGGAATGTTGTGACCCAGGAGCAGCTGATGTACCTGAACTGTGTGTTGCCTCTGAAGGCCCTGCTGTGCTCCGTTACTCCCCCTCTGACTGAGTCTGCTATAGCACTACTGTCTGAGCTAGCCACACACCAACCCAATAGAGAGGGCCTGGTGAATGAGGGCCTGGTACAGGTGATAGGGCAGCTGCTCCTCTGTCACAGATCCAGCTCCATCATCAACCACAGTGTTGTTACCATCACCAACCTCAGCAGCACCAGCGAGGGACAGCAGGCTGTTATGGACAGTGAGTGTGTAACGGGACTTCTCAAGGCCCTTGTGTCCGGTGTGACCtcagaggagaccgttctgtgtGTCACTTCCTGTTTACATCACCTGACAAGCTGGGACTTACTTCAGTCTCATTTGGCCACAAAAATGACTCCTGAACATGTTTCAAGTCTGGTGAAGTTCTCTGCACAAATGGACAATCTAGAGCTGTCCTATCGGTCTGCTTCCATCATCAGCAAACTAAAGATGAACGAACATGTCATCCAACTACTGACACCACAATACGCTGCCATCTCTGAATATCTCCTGATGTACCTCAAGAACCAGGAAGTGCGATTCCAACAGCTGAGTATTGTTACTCTATGCAACCTGAAGAAAGACGGAGAGTTTTCAGTGCTGATGAGTGGTAGTGTGCTGGAGAAGCAGCTAAAATGGGTGCATGCACAGACGGAGCAGACCAGGGAGTTACTGCAGGCGATTCAGATGCCTCCATCCTCCTAACCTGTCCACTGGAGCTCTCTCTGCTTCAGGACACGGACCGACACCTCTCTGCTTCAGGACACGGACCGACACCTCTCTGCTTCAGGACACGGACCGACACCTCTCTGCTTCAGGACACGGACCGACACCTCTCTGCTTCAGGACACGGACCGACACCTCTCTGCTTCAGGACACGGACCGACACCTCTCTGCTTCAGGACACGGACCGACACCTTTCTGCTTCAGGACACGGACCGACACCTCTCTGCTTCAGGACACGGACCGACACCTCTCTGCTTCAGGACACGGACTGAGATGTGAGATATGCATATCACTGTTTGAACTGACTTGCCATTACCTTTGAACCTGACAATGATTACTGTGTCGTGATGATATTTTTAATGATGTTAAGGCGTTTTATTTTCTGAGTGATCACACTGTTGTGTTCTAAGCATTTACATCCATATTGCACTTGTGAACGGGGGGAAAAGAGGTCTTATTTTCATTTTTATACAGATTCAATGCTTTTACAGTTCACAAACCATTATTTAATGCTGCGTTCaggtgctagtcggaactaggaaactttACATTTCAGACTTCCTAACTGGTGGTAGTTATACATGTGCCGCtttcaaccagttagcaagtcgaaCATTTCAGAGTTTCCTAGCACGTGAACGCGGCATTTATacagcaagtattcagacccattgactttttcccattttgtcacgttacagtcTTATgttaaaatggataaaaaaatatatattatcctcatcaatctacacacaatagcccataat

Function

GO: NA

KEGG:

id description
K08332 VAC8; vacuolar protein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2262628 lncRNA downstream 121 36336480 ~ 36396279 (-) True G1979258
TU2262663 lncRNA downstream 9773 36386222 ~ 36386627 (-) True G1979285
TU2262660 lncRNA downstream 9856 36386092 ~ 36386544 (-) False G1979285
TU2262659 lncRNA downstream 9856 36386222 ~ 36386544 (-) False G1979285
TU2262662 lncRNA downstream 9856 36386222 ~ 36386544 (-) False G1979285
TU2262748 lncRNA upstream 93650 36498883 ~ 36499161 (-) True G1979345
TU2262790 lncRNA upstream 136925 36542158 ~ 36544636 (-) True G1979385
TU2262834 lncRNA upstream 180012 36585245 ~ 36591872 (-) True G1979420
TU2262844 lncRNA upstream 218666 36623899 ~ 36627233 (-) True G1979428
TU2262902 lncRNA upstream 293625 36698858 ~ 36699135 (-) True G1979473
XM_036963030.1 mRNA downstream 26155 36325431 ~ 36370245 (-) False LOC110504237
XM_036962571.1 mRNA downstream 302751 36031757 ~ 36093649 (-) True LOC110504236
XM_036962732.1 mRNA downstream 365137 36030144 ~ 36031263 (-) True LOC118944267
XM_021585289.2 mRNA downstream 547473 35834303 ~ 35848927 (-) True LOC110505835
XM_021585291.2 mRNA downstream 547474 35834303 ~ 35848926 (-) False LOC110505835
XM_036962630.1 mRNA upstream 10215 36415448 ~ 36427489 (-) True LOC110505851
XM_021585307.2 mRNA upstream 22539 36427772 ~ 36439798 (-) False tulp4b
XM_021585309.2 mRNA upstream 22539 36427772 ~ 36439798 (-) False tulp4b
XM_021585310.2 mRNA upstream 22539 36427772 ~ 36439798 (-) False tulp4b
XM_021585311.2 mRNA upstream 22539 36427772 ~ 36439798 (-) False tulp4b
TU2262632 other downstream 49345 36345574 ~ 36347055 (-) False LOC110504237
TU2262487 other downstream 180170 36211946 ~ 36216230 (-) True G1979142
TU2260400 other downstream 1295422 35027100 ~ 35100978 (-) False G1977346
TU2260401 other downstream 1295422 35027100 ~ 35100978 (-) False G1977346
TU2260458 other downstream 1339474 35053050 ~ 35056926 (-) True G1977392
TU2263072 other upstream 559941 36965174 ~ 36965719 (-) True G1979607
TU2263320 other upstream 932513 37337746 ~ 37338882 (-) True G1979813
TU2264229 other upstream 1798208 38203441 ~ 38204163 (-) True G1980619
TU2265398 other upstream 2631054 39036287 ~ 39038944 (-) False G1981678
TU2265399 other upstream 2631054 39036287 ~ 39038717 (-) True G1981678

Expression Profile