RNA id: XM_021585309.2


Basic Information

Item Value
RNA id XM_021585309.2
length 7587
RNA type mRNA
GC content 0.50
exon number 16
gene id tulp4b
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36427772 ~ 36439798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAAatgcaatccagggtttatatacatcattgttGGCAACGCGACTGCACCTTATCATTACAAGTATTTGGTGTTCTGCACAGATCAAGGATATGACAGCGACCTTATATTTGATAAAGAATTCTCTTGGTCTTCAGTGCACCATCTGCATGGAAACATGGACACCACCTACAGAGGAGGAATTGTAGTCAACAATGTCCAGGAACTGTGAGCCTGGTCACTCAGTAAGGATGTTAGCTGCTGTGGAACATGGTCCCATCCTCTGCAGCGACTCCAACATCCTCTGCCTCTCCTGGAAGGGCCGGGTCCCCAAGAGCGAGAAGGACAAGCCGGTGTGCCAGCGGCGCTACTATGAGGAGGGCTGGTTGGCCACAGGGAACGGGAGAGGGGTGGTGGGCGTAACGTTCACATCCAGCCACTGCAGGAGAGACAGGAACACACCTCAGAGAATCAACTTCAACCTGCGAGGACACAACAGTGAGGTTGTGTTGGTCCGTTGGAATGAGCCCTTTCAGAAGCTGGCCACGTGTGACATGGAGGGAGGCATCTTTGTTTGGATTCAATATGAGGGACGGTGGTCTGTGGAGTTAGTGAATGACCGCGGTGCCCAGGTGAGTGACTTCACATGGTCTCATGACGGCAGCCAGGCCCTGATCGCCTACCGGGATGGGTTTGTCCTGGTGGGCTCGGTCAGCGGACAGAGACACTGGTCCtcagagattaacctggagagcCAGATCACCTGTGGCATCTGGACACCTGATGACCAACAGGTGTTGTTTGGTACGGCTGATGGTCAGGTGATAGTGATGGACTGCCATGGTCGTATGATCGCCCACGTCCTCCTGCATGAGTCAGATGGCATCGTCGGCATgtcctggaactgtccctgtttCCTGGTGGAGGACAGCACAGAGAGCGACACCGACTCTGATGACAATAACCCACCTCAAGTACGTAACCTGAAGCCCCTTCTGACAGTCAGCTTCATATCAGGAGACATCAGTTTGATGAACAACTACGATGACCTCGCTCCTACCGTCATCCGCTCAGGACTCAAAGatgtagAGGTCCAGTGGTGCTCGCAGGGGGACCTCCTGGCAGTAGCTGGGATGGAGAGACATGGTGTCCCCGGACTCCCCTCTGACTCTATCATGAGGAACGCCCTGGTCAAGTTCTACAATGTCCAAGGAGAACATATCTACACGTTAGAAACACCTGCCCAGCGCCCCATCACCACCATCTGCTGGGGCCATAGAGACTCTCGTCTGTTTCTGGCATGTGGCCCGGCGCTGTATGTGGTGCGAGTGGAGCACCGGGTGGCCAGCCTGCAGCTGCTGTGCCAACAGGGCATCGCCAGCGCCCTGCGGGAGGAGAGGGACGTGGGCAAACTCAACATGCCCTCCTTACTCTGCTCCTATGTCACCACCGCCTTCATACCCACCATCAAGCCTCCCATTCCTGATCCCAACAACATCCGGGACTTTGTCAGCTACCCCACTGCTGGCAACGAGAGGTTGCACTGCACCATGAAGCGAGCGGAGGACAACCCAGGGGCAGGGGGACCCTGTTACACCCTATACCTGGAACACCTAGGGGGGCTGGTGCCTATCCTCAAAGGCAGACGCATCAGCAAGCTACGCCCAGAGTTCATCATCATGGACCCCAAAACAGACAGCAAAGCAGGTGGGCTTGGCACAGGAAAAGaCGAGGTGTGTGTGAATGCTATGATCTCCTACATGACTGACAGCTGTAACTGTTCTGACTCCAGCGACATTGAGTTGAGTGATGAGTGGGTTGGAAAGAAGTCGCCTAAACTATCCAGAGGAAACAGGTCTCCCAAGCATTCCAGAAGGAACATGGAATCAAGAAAATCTCCCAAGACGTCTAGGACTAGTCAGGAAGGGCTTCGATCGCCAAGGTTACCAACGAAGAAGCCTCTGATTCGTTCTCCCAGTCTGACACGTCGAGAGATGTCCATGGATGGAATATCTGAGCATAATTACCTGGCTCAAGTCACGTCCAATATTTGGGGGACTAAGTTCAAAATTGTGGGACTTGCTTCTTTCTTACCTGCTAATCTGGGTGCAGTTATCTATAAGACCAGTTTGCTCCATCTACAACCAAGGCAGATGACAATCTACCTTCCAGAGGTGCGGAGAATATCACTTGACTTCATGAGCCTGCCGGTCTTTAACCCAAACGTCTTCAGTGAGGATGAGGATGACTTGCCAGTAACGGGACCATCTGGAGTGACAGGTGACAACCCTCCATGTACGGTCAACATCCCCATCGCACCCATCCACAGCCCCGCCCAGGCCATGTCCCCCACTCAGAGCATTGGTTTGGTCCAGTCCCTGCTGGCCAATCAGAACATTCAGCTGGATGTCCTGACCAATCCCACGGCTACGgcttcagcagcagcagcagcagcagcagcagcggcagcagCAGCGGCCTCAGCCTCTGTTCTGGGGTCTGATCATGGTCAGGATGCTGTGGCAGTACATTACAGTGGGACTCTAGGAAGGTACTCTAACCCAGGACAGGTGATATTTAATGGGCTAGAGATGGGTCCCCTCCTGGCTGGAACATTACCTCCACCTCCGCCTCCACATAACCTCCCCCAACAACCTCACCAACAACGTCCTCAGTCACAACAGACCCACCAACAACAGCAGTCCAAACAACCACAGCAGATACAAacgcaacagcagcagcagcagcaacaacagaggATGCAACATCAACAACTACAGCACCAACAACCACAGATTCCACAACATCAACAACTACAGCACCAACAACCACAGATtccacaacaacatcaacaactacaACAGCTTCACATACAGCAGatccaacagcagcagcagcaacagactCAGCAGCACCAAGCACTGCAACAACAGTACCAACAACAACAGGCGGCActgcaacagcaacaacagcagatCCAACAGCAGCACCAACACTTGCAACAGCAGCAAATCGCTCAGCAGCACCAGCAGATGCAACTGCAGCACGAGCAAATGCATCAGCAGCAGCAACAaatgcagcaacaacaacagcagatcCGACAGCAGATTATAGAGAtgaggcagcaacagcagcagttgcagcagcagcatcagcagaTACAACAGCAACACCAACAGATGCAGAGACAGCACCAACAAATGCAGCAGCAACTAAAGCTGCAGATCACCTTGCCCCCTCCGCCTACtggctaccccaccatctctttGCAGCAGTTTCAGGTACCCCACCCCAGTCCAGAGTTGGGACCAGAAAGAGGACAGCAGGGCCATACTCAGAGCCATACTCTGGGCAGGCCAAGTCTACCACGATccaggcctccatcattcattgatGTAGACAGCATACGGTCTAGACCTCCTTCCTTCCTTGAAGCAGACACATCAAGATCTAGGCCGCCGTCATTCATCGACATAGACACAATACGGACTAGACCTCCTTCTTTCATTGATGTAGATACCGGTACATTGCGATCTAGACCCCCGTCTTTCCTCGATGCAGACTCCTCCCGATCTAGAACTCTTTCAttcatagacacagacacactacgGTCTAGACCTCCTTCCTTCCTTGATGCAGAGACTTCCCTTGAGATCCAGATGAGGAAGGTGAACGCTCCCCCGCCCTACCCAGGAACCGTAGTGTCTGCAGCCACCGCCACAACCTCCACCGCTCCTCAGACTCTCATCACCAACTGTGACAACCCCAACATACTGGTCACAGTAGACCCTTGTCTGAAGAAAGACGAGTTCTCACTCCATCCAGTTGGTCTCCAGTACCAGATGGGATACGAGAGGATCACAACCTTTGACAGCAGTGGGAATGTAGAGGAGGTGTGTCGCCCTCGCAGAAGACTCATACGCAACCAAAACGCCTACGCTGTTCAAGGCATGGGAGGTTCTGCCACACTTAAAGTCACCTCATCGTCTGACAGTAAGAAAATCCATCTTCCTTACAGCTCAGCGACTCTAAGCCGCCTCTCGGTGCCACGATACTCCATACCCAGCGGAGACCCGCCCCCCTACCCAGATCCAGCCAATCAGGTCAACATTAACACGACAACACTTCCTCCTCCCCAACGCATGGACAGTAGTCACATGATTCACGCTACCTTGCGACGTGACAGGCGAGATGGGGAATCCCGCTTGAAGGTGTCCCAGATGGTTGATGCTTCAAGGACTCTACCGTCCAAGTCGAAGATCAACAGTGCTGCCCTAGCGCTCTCTTACCAGCAGAGAGTGCCAACAGCTCTGTATACCTGCACTcagtgcagcagcaacagcagcagcaccaGTGTCAGTGTTAGCGGGGGTGGGAGTAGCAGCAGTGGCATTGCAGGAGGCACTGTAGTGCGACAGGATTTCCCACCAGGAAAAGGTGCTCATCACAGCACCATCATTGTCCACTCCAAAAGCACTTCACCTCTTGCTTCTCAGTCATCGTACAATCTGCTGAGTCCTATTGATAACAGCAGGGATAGGACTGTATACGTGAACTCTGCCTTTACTGAAGACGAGGCATTAAGTCAGCAGTGTCGTCACCTGACTCTTGGGGAGGTTAGTTTGACTCTGAAACGTCCTCCGCCATACCAGTGGGACCCAAACACCGCAGAGGAGTTCTGGATACCTCAAGAACAGACTATCTTagctccccctccaccaccaacacacaaACCCCCACCCCCACTCATCTTCAGCAATGCTCAGCACCTGGACATGACGCGGCTGCCTTTCCTACTCTCAACAAAACCCCCCAGCAGCCCAAGCACTGTTACTTTCCCATCGGGTTACCAGATCTCCCTGTCACCTTTCCCTCCAGGGGGAGGTCAGGGTGGACCCCCACTCCAGTCAATACAGAGCCCTCCACCACCCTGCCCTCCCAACGAAGTAGTTGCCCCAGTTCCCCAGTTCACCCAGCAGGACCCCAACTTGGTCTTGCCACCTGGATACCCTCCCAACCTTGCCAACCTGGCTTGCTGCCCTCTGCCACCGATGTACCCAGGAGCTAGCTCCTGTGCCGGGCTTCAGCTGCAACCTGTTAGCCTGCACCCCTGGAACCCCTACAGCCTACCCATGCAAGACCCCTCAGGCTCTGCCACCCTGCCCAGCAAGTCTCATCAACTGTTAGAGAAGCcagtcctctccccatctcctcctacagttcctcctcccccacctccttcacttcctcctccacctccaccaacCATGCTTCCAAAACCCAAAAGCCCTACAGAGGAGCTGACGGAATCTGCCAGTAGCTTCCAGGAGCCGTCTTCTCTAAATGAAAGCCCTGTTCCAGACCGGCAGGGGACTGACAGGTTCAGCAAGAAGAGCCGTAAACGTCTGGACAGCCGAGCTGAGGAGGCAAACATGACCACCGTCTCAGAAGGAAAATCCAAAAAGGAAGGGCGCGCCCTCTCCGACTTCAACTccctcatctccagccccaggcttgGCGGCAGGGACAAGAAGAAACCCAAAGGCCAGAGGGAGCAGCTGAACAAAACCAAGAAGCTCAACAGGACAAGTACCACCAGCGAGTTCCAGGACAGTTCCGAGAGTGAGCCCGAGCTCTTCATCAGTGGAGACGAACTGATGAACCAGAGCCAGAGCTCCAAGAAGGGCTGGAAGAGTAAGAGGAGCCTGAGGATGGCCAGTGAACTGGAAGAGATCAAGTGCAGGAAGGCCAATGAGAGAGAGGACCGCGGGCTGGGCAGCCAGGGATTCGTCTATGTCATGGCCAATAAGCAGCCACTCTGGAACGAGGCAACACAGGTCTACCAGCTGGACTTCGGAGGACGGGTCACTCAGGAGTCTGCTAAGAACTTTCAGATCGAGTTGGATGGCAGACAGGTGATGCAGTTTGGCAGAATCGATGGGAACGCCTATATCCTCGATTTCCAGTATCCTTTCTCAGCAGTGCAGGCCTTTGCTGTGGCCTTAGCCAATGTTACTCAAAGGCTTAAGTGAGAGACTGCTCTCACCCAGCAAGCACCACATATGTGTCATATATATGGATCTGTTCCAACCTATACTGGTGCATAATGACAAAATAATCAGAGATTATGTTCCTGGGTTCTGTAACATGGGACTGTCAATTTAGTGCTTTGCAAGGACAACACGGTTTATGGGGCTATgaacagtggtgtagtggagggtaaacgcaCGTAAACACCGTTTACACACCTTCTTTCTTTTGCGCGAGCTGAAATatgcattgaaagtatagggTGCGTTACTTCAGCGTTTACCCACCtattattatgattttttttttacaactacaTCACTGGCTATGAAATACACTTTAGTAAGCCTCATATAAAAACATTTTAGAAGGTAAGTTACTCTCACTTACCGTATCTATGCTTCGGATTTAAAATCTGCCCTGTGGAGAAGTGCAATTTTAAAAGACCTGATTAAAGAAAAAGTGCAGTGCTGGACAAAAGTGTTGAAATGATGCATTGTGGGAAAGGAGACCATATTGATTGTGGAAAGACAACAAGATGAGTTTGAAGGTATTAGAGTTTATTTAGAAGTTATTTATAACATCACTTCTATGAAGTGATCCTATAGGAATATCCACATTTCCCTAAGTTGTGCCATTATTGACAAGCCATTATGTAAATGTTATTGTATGACAACATACAACATTAATTGGAACACATTCATAAATAAATTGTGACACCTGTATATTATCAATGTTAGACCTAACTTTCTGCCAATCATCTCTTTTAGTAGACCCTATGAAAAACAAAAATTGAACGCATGTGTAAATCCTTATCAAAAATGTTAAAATGCATGGATCACGTTATCTGGGACAAAGTTTATACAGTAGAGATCTCATCTGCTGACAGATCGGTCAACTCATGTTAAatcatacaacaacaacaacaaaaaagacaaGCTAACCTCTGAATTAATGTAACGTTATGGTGTATAAACTTGGTTGGCTCTGTGTTTTAGTCAGTCATTGGTGGTGTTTAAAGATGCTACTTGAACATTGCATTTGAATGTGAAGTGCTTTGCCTCCTTGGAGTTGCTGCTGCTTTTTGATAGAGATTGTCCGCATTAGTGCTAATAGTGTCACATGGTATTGAAGACATCAAAGTTATCATTTTTATATTTTCAGATTTGAATTTGTTTTTGATTGACGGATTAATTTGTGAACATGTTGTTCAGTAATTAACATGTCTGGTGCTGCTTTTTTTAAAAGTATATCTGCAGGTTTATTTGAAAAGGTATTGTAGACAAGTTATGTGATGATTCAACTATTCAATGCTTAGCATTGCTACTCTACTGTGTCATACAGCAAGACTTCAATGCGtattatacaatagagacagtgtgtgtggtgtggtcaTTGTGTTATTGTCATCACCACCTAAATTAATATTATTGTATTGCCTAGATGGATTTTTCTTAAATTTTTTTCAATTGTATACAATGATTTTTGTCCAGACTATATATCAGAAGATGTATCATTGAAGATAGGTCTAACTGATTTCCAAAcacttaataaaatgtataacATTGAAAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2262628 lncRNA downstream 31493 36336480 ~ 36396279 (-) True G1979258
TU2262663 lncRNA downstream 41145 36386222 ~ 36386627 (-) True G1979285
TU2262660 lncRNA downstream 41228 36386092 ~ 36386544 (-) False G1979285
TU2262659 lncRNA downstream 41228 36386222 ~ 36386544 (-) False G1979285
TU2262662 lncRNA downstream 41228 36386222 ~ 36386544 (-) False G1979285
TU2262748 lncRNA upstream 59085 36498883 ~ 36499161 (-) True G1979345
TU2262790 lncRNA upstream 102360 36542158 ~ 36544636 (-) True G1979385
TU2262834 lncRNA upstream 145447 36585245 ~ 36591872 (-) True G1979420
TU2262844 lncRNA upstream 184101 36623899 ~ 36627233 (-) True G1979428
TU2262902 lncRNA upstream 259060 36698858 ~ 36699135 (-) True G1979473
XM_036962630.1 mRNA downstream 283 36415448 ~ 36427489 (-) True LOC110505851
XM_021585305.2 mRNA downstream 22539 36396400 ~ 36405233 (-) True LOC110505848
XM_036963030.1 mRNA downstream 57527 36325431 ~ 36370245 (-) False LOC110504237
XM_036962571.1 mRNA downstream 334123 36031757 ~ 36093649 (-) True LOC110504236
XM_036962732.1 mRNA downstream 396509 36030144 ~ 36031263 (-) True LOC118944267
XM_021585313.2 mRNA upstream 217843 36657641 ~ 36673264 (-) True LOC110505855
XR_005039533.1 mRNA upstream 265702 36705500 ~ 36711006 (-) False LOC118944239
XM_036962624.1 mRNA upstream 280141 36719939 ~ 36737917 (-) False sash1b
XM_021585319.2 mRNA upstream 280141 36719939 ~ 36821245 (-) False sash1b
XM_021585321.2 mRNA upstream 280141 36719939 ~ 36821245 (-) False sash1b
TU2262632 other downstream 80717 36345574 ~ 36347055 (-) False LOC110504237
TU2262487 other downstream 211542 36211946 ~ 36216230 (-) True G1979142
TU2260400 other downstream 1326794 35027100 ~ 35100978 (-) False G1977346
TU2263072 other upstream 525376 36965174 ~ 36965719 (-) True G1979607
TU2263320 other upstream 897948 37337746 ~ 37338882 (-) True G1979813
TU2264229 other upstream 1763643 38203441 ~ 38204163 (-) True G1980619
TU2265398 other upstream 2596489 39036287 ~ 39038944 (-) False G1981678
TU2265399 other upstream 2596489 39036287 ~ 39038717 (-) True G1981678

Expression Profile