RNA id: XR_005039533.1


Basic Information

Item Value
RNA id XR_005039533.1
length 1522
RNA type mRNA
GC content 0.42
exon number 3
gene id LOC118944239
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36705500 ~ 36712775 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ActaggaaaaaaaaaaaatccaagtcggagctagtttttttccgagttcccagttctATTTAACACAAGGAAGTCGGAgattgagttcccagttgttttgaacgcaccaTTCGGCAAGGTTTTCTTTCTGCTGTTCGTGCACACCACAATTTTTCGGCGTTTGtgtttgtcattcaacgagaggcGAATCGTTTTCATTCCATGTTTTTTTcgattgagaaatactgcaccaaacgtcttagatgtaaaattgtaCGACTAAAGATAACTTGGACAAAAACGTcaatgaatgacagattttttttgtttgttttctttgattaattctgactattttgagagAATATTTACTAGTTACGGCgtctcaagatggacaaacagtTTGCCGCTTCTCGTTTTTCAAGGGAAGGACTTTTTAAAGGAGTAAACGCGCACATGCGGAGGATTTAACCAAAGTTTTTttaaactgacccaagacagaccagaacctgtcgtttccaatgggagcaaattaatcatagtCGACAGAATAACCAAGGATATAGGCAGAGCCAAGCACGGGCTAGTGAGGTCCTATTGGCTTGTTTTAACATTTATTCGATCATTTCGTTAGGGAACACCTAGCCCTTGCGCTCCTTCCAAACAAcacgttttttttatttcttttttttactttGGAAAAAGGGTCAAGTCTACAAAACGCAGTCCAGTCTGTTTGTTACAGGTaatagttttggaaacagaactGTATGAAGATCAAATGTTCCATCAATGACAAAAATAGCAGAATGTTGGACAAAAGCCACCTCGCTCCTTATTTTCCCTCTCCCGCATCACCGTATTTGATAGTtagtggaaacgccaaccggatgcttcacattcatacatccggtgaaatatttGTCCCATTGTCCAAGGGGTGTAAAGCAACCGAACAATTTCCGTCTCGCGATAGTCTGAACGAAGGCGAGAGAAGGGTccttaccacagccacaaagtcgtaAACGCGTGTGATGGCGTTGAATGTACACTAGATTACGGTAAATTGCCATTTAGGCCGCCCATTATATGCCTGTGGGCGTGCTGGCAGCAAATTCGATCGTGCGTCAAGAATTCAGCatagcaagtttgtatgaaggtctggttattAAATTGATACATAAGTTCAATAGTAATATCCTCTAAAACGCTCTGGTTGAGAACCTTTGCAGCCCTGTTTCCAATTGTCCACATGGCTGGAAGAATTTATCCAAGTACCAGCCCGTACCTCCATCAACCCCACTGACATAGAAAAGAAAGGAGACCCGTCTAATTTTTTATCTCCCATTAACGATTTAGGGATTCTGCCGAACACCCAGACAtggatccacctgatgtcctGCATTACCAACCACTCTCCAACTTTTCATTACATCAGCtactgttattgtcatgttgtccATATCTGCTAAGACAAGCCAGTGTATGAATCAAATGTTTTTGCATATGAATGAAGTGgaaattagggggggggggggggggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2262902 lncRNA downstream 6365 36698858 ~ 36699135 (-) True G1979473
TU2262844 lncRNA downstream 78267 36623899 ~ 36627233 (-) True G1979428
TU2262834 lncRNA downstream 113628 36585245 ~ 36591872 (-) True G1979420
TU2262790 lncRNA downstream 160864 36542158 ~ 36544636 (-) True G1979385
TU2262748 lncRNA downstream 206339 36498883 ~ 36499161 (-) True G1979345
TU2262894 lncRNA upstream 1485 36712491 ~ 36715698 (-) True G1979465
TU2262915 lncRNA upstream 14054 36725060 ~ 36733709 (-) True G1979481
TU2262914 lncRNA upstream 28258 36739264 ~ 36741556 (-) True G1979480
TU2262971 lncRNA upstream 89591 36800597 ~ 36801350 (-) True G1979535
TU2262972 lncRNA upstream 90659 36801665 ~ 36802192 (-) True G1979536
XM_021585313.2 mRNA downstream 32236 36657641 ~ 36673264 (-) True LOC110505855
XM_021585307.2 mRNA downstream 265702 36427772 ~ 36439798 (-) False tulp4b
XM_036962624.1 mRNA upstream 8933 36719939 ~ 36737917 (-) False sash1b
XM_021585319.2 mRNA upstream 8933 36719939 ~ 36821245 (-) False sash1b
XM_021585321.2 mRNA upstream 8933 36719939 ~ 36821245 (-) False sash1b
XM_021585322.2 mRNA upstream 8933 36719939 ~ 36821245 (-) False sash1b
XM_021585320.2 mRNA upstream 8933 36719939 ~ 36821246 (-) True sash1b
TU2262632 other downstream 358445 36345574 ~ 36347055 (-) False LOC110504237
TU2262487 other downstream 489270 36211946 ~ 36216230 (-) True G1979142
TU2260400 other downstream 1604522 35027100 ~ 35100978 (-) False G1977346
TU2263072 other upstream 254168 36965174 ~ 36965719 (-) True G1979607
TU2263320 other upstream 626740 37337746 ~ 37338882 (-) True G1979813
TU2264229 other upstream 1492435 38203441 ~ 38204163 (-) True G1980619
TU2265398 other upstream 2325281 39036287 ~ 39038944 (-) False G1981678
TU2265399 other upstream 2325281 39036287 ~ 39038717 (-) True G1981678

Expression Profile