RNA id: XM_036962634.1



Basic Information


Item Value
RNA id XM_036962634.1
length 1282
RNA type mRNA
GC content 0.54
exon number 7
gene id ddo
representative False

Chromosome Information


Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 36712283 ~ 36719655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCAGCATGTGGCAATGGGACGCCGGGCTATCGCGTCTGTGGACTATGTATGAGTGTGCTTAAAATCTCAGGCATGCGCAGCAGTGAGCCACTGATCGTAATACGCTCTGAATCATCCTATGATGAAGAGTATGACAATCGTGGTGGTGGGTGGAGGTGTGGTTGGCTTCTCCACAGCTGTGTGCATCGCTGAGGCCCTCCCCTACTGCTCTGTGACCCTCATAGCTGACAGGTTTACCCCAGACACCACCAGCGACGTGGCTGCTGGGATCCTGATTTGCTCACCATTCCCAGATATCCCTCTGGAACAGCAGCAGAGGTGGTTCAAGGAGACGATTGATCACCTGCTGGCTATTGCCCAATCAGAACAGGCATCAGAGGCTGGGGTGTTGCTCAGCTCAGGatgGCAAATATACAAGGAGCTCCCTGTGGATAAGGTGCCATTCTGGTCTGCATTTGTGCTGGGTTTCCGAATCATGACAGACCGTGAACTGAAACGGTTTCCTGATCACAAGTTTGGCCAGGCGTTCACCACAGTGAAATGTGAATGTTCCAACTACCTGCCATGGATGGAGAAGAGGTTTAGAAAAGCAGGAGGCCAGGTTGTGAAGCAGAAAGTAAACGACCTCGAGGAACTAAGCAGCCAGGGATACGACGTCATCGTCAACTGCTCCGGTCTGGGCGCCAAGTCTCTAGTAGGGGACTCTCAGGTCTTCCCTGTCAGGGGGCAGGTCCTCAaaGTCCAGGCCCCTTGGCTCCAACACTTCATCCGGGATGGGGAAGGGCAGTCATATATCTACCCAGGGATGCACAGCGTGACAGTGGGCGGCACCAGGCAGGTGGACGACTGGCGCCTGGAGGTTGACCCAAAGGACAGCCAGGACATCCTGGAGCGCTGTAGCAGCCTGGAGCCGTCCCTGAGCAGGGCCAGGGTCCTGGGGGAGTCTGTGGGGCTGAGACCCAGTAGGAAGAACGTccgggtggagagagagattgtcCTCCTGGGGAACCGACAAGTACCGGTGGTGCATAACTACGGCCATGGGGGCTGGGGGGTCACTCTGAGCTGGGGCACAGCCCTGGAAGCACTGGGGCTGGTCAGGAAGTGTCTCCATGAGAGGCCCCCCAGGGCCAGGCTGTGAACACTACACAGATACTCTGCCATATAAATAATTTCTGAATAACTTTGATATAATTACTTGATCTGCACTGTTTTTTCACACAATTAGTGATACCTGCTGCCATTGCACATTAATGAAATTAAAGAAAGCAATGCAATTTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2261563 lncRNA upstream 3456 36707499 ~ 36708827 (+) True G1978368
TU2261501 lncRNA upstream 219325 36492051 ~ 36492958 (+) True G1978312
TU2261450 lncRNA upstream 277611 36434137 ~ 36434672 (+) True G1978280
TU2261405 lncRNA upstream 352336 36359704 ~ 36359947 (+) True G1978249
TU2261330 lncRNA upstream 491175 36220756 ~ 36221108 (+) True G1978181
TU2261597 lncRNA downstream 20162 36739817 ~ 36741984 (+) False G1978398
TU2261598 lncRNA downstream 20369 36740024 ~ 36741054 (+) True G1978398
TU2261630 lncRNA downstream 58524 36778179 ~ 36778405 (+) True G1978428
TU2261643 lncRNA downstream 75999 36795654 ~ 36796548 (+) False G1978440
TU2261644 lncRNA downstream 75999 36795654 ~ 36799376 (+) True G1978440
trnal-uaa-61 mRNA upstream 12592 36699609 ~ 36699691 (+) True trnal-uaa-61
XM_021585318.2 mRNA upstream 15092 36693964 ~ 36697191 (+) True LOC110505858
XM_036962631.1 mRNA upstream 56405 36645560 ~ 36655878 (+) True rmnd1
XM_036962622.1 mRNA upstream 81231 36449259 ~ 36631052 (+) False LOC110504238
XM_036962623.1 mRNA upstream 81231 36473138 ~ 36631052 (+) True LOC110504238
XM_036962988.1 mRNA downstream 131218 36850873 ~ 36852603 (+) False LOC118944353
XM_036962989.1 mRNA downstream 131218 36850873 ~ 36852603 (+) True LOC118944353
XM_021585335.2 mRNA downstream 248846 36968501 ~ 36988155 (+) True LOC110505865
XM_021585334.2 mRNA downstream 268309 36987964 ~ 36993882 (+) False LOC110505864
XM_036962602.1 mRNA downstream 268335 36987990 ~ 36993882 (+) True LOC110505864
TU2261421 other upstream 317067 36389271 ~ 36395216 (+) True LOC110505847
TU2261218 other upstream 684546 36026533 ~ 36027737 (+) True G1978080
TU2259645 other upstream 1980972 34730027 ~ 34731311 (+) True G1976689
TU2259636 other upstream 2008389 34701980 ~ 34703894 (+) True G1976680
TU2259521 other upstream 2230362 34481519 ~ 34481921 (+) True G1976575
TU2261886 other downstream 498606 37218261 ~ 37222036 (+) True LOC110504241
TU2261916 other downstream 545125 37264780 ~ 37310451 (+) True hivep2b
TU2263557 other downstream 1001479 37721134 ~ 37729904 (+) False G1980026
TU2264448 other downstream 1808952 38528607 ~ 38529105 (+) True G1980792
TU2264410 other downstream 1846223 38565878 ~ 38574360 (+) False LOC110505893

Expression Profile