RNA id: TU2267800


Basic Information

Item Value
RNA id TU2267800
length 786
RNA type TUCP
GC content 0.49
exon number 2
gene id LOC110505959
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 41740173 ~ 41757394 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACTCCACTGAATGGAAAAGCTACTTCGACTTCAACTGGCTTGGAGAAGAAAAACAGTGATTTAACTGGGCGAAAATAGTTTACTTCAGCAAAACTGGCTAGAATTAGTTGATACAAGCAATCGTTCTATTTTGGCTGATTGTCTAAATTGCCAGAATATTAGCAAAAGGTATGCGTAagttaactaacgttagccaAGTCTGTAGTttaattagcctagctagctagctagctagctaactttagttaGCTAAAATGTACACACTACAGATTGGAAGGGACGCTCGTAGTTTTTGGGGAACTTTCCACGAGTTTATTACATTGCATTGATGTCTCCTTTTTGAGTTATGCTTTCAAGAAAGAAAAGTAAAAGCGAGGCGTCGAAACCAGCGGAAGTACACGGGAAATATGTGAAGAAGGAGACTTCACCAGTCCTGAGAAATCTCATGCCCTCATTCATCCGACATGGACCCACTATTCCCAGACGCACCGAAGTCCCTCTGCCGGAGCCTGGTCCCTCAGCCTACCCTGTGGGAAACAGCCCTGAACCTGTGGTGGTCCGCAACAAGAGTTTCCTGCGCGCCCCTGTGCAGAGACCACCCCACGAGGTGGCTCGGAGGGAGAGCCATAGGATGTCAGCCCCTCCGTACCTGCCACGTAGCCTGGGGGATATAACCCACGAGTACGGAGGCTCCTCGCAGTCCTTCCTCACGGACGTGAGCGCCGTGGCTGAGAACGGTGACGCTGGACGCTACTACTACCCCCCGCCTCCGGAACCTTACTA

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU2267750 lncRNA upstream 78583 41661201 ~ 41661706 (+) True G1983584
TU2267749 lncRNA upstream 84552 41655249 ~ 41655737 (+) True G1983583
TU2267689 lncRNA upstream 112199 41626068 ~ 41628090 (+) True G1983533
TU2267729 lncRNA upstream 138545 41601327 ~ 41601744 (+) True G1983569
TU2267725 lncRNA upstream 148756 41591125 ~ 41591533 (+) True G1983565
TU2267823 lncRNA downstream 13022 41754621 ~ 41755446 (+) True G1983630
TU2267794 lncRNA downstream 17016 41758615 ~ 41759925 (+) False G1983614
TU2267795 lncRNA downstream 17016 41758615 ~ 41759925 (+) True G1983614
TU2267867 lncRNA downstream 106360 41847959 ~ 41848335 (+) True G1983663
TU2267879 lncRNA downstream 122033 41863632 ~ 41917571 (+) True G1983673
XM_036962636.1 mRNA upstream 3161 41677344 ~ 41737128 (+) False LOC110505960
XM_036962638.1 mRNA upstream 8046 41677345 ~ 41732243 (+) False LOC110505960
XM_036962637.1 mRNA upstream 8046 41677346 ~ 41732243 (+) True LOC110505960
XM_036962229.1 mRNA upstream 74227 41636159 ~ 41666062 (+) True LOC110505964
XM_036962230.1 mRNA upstream 76873 41636156 ~ 41663416 (+) False LOC110505964
XM_036962933.1 mRNA downstream 39672 41781271 ~ 41937779 (+) False LOC110504274
XM_036962932.1 mRNA downstream 39902 41781501 ~ 41937779 (+) False LOC110504274
XM_036962934.1 mRNA downstream 39902 41781501 ~ 41937779 (+) False LOC110504274
XM_036962935.1 mRNA downstream 39902 41781501 ~ 41937779 (+) False LOC110504274
XM_036962936.1 mRNA downstream 39903 41781502 ~ 41937779 (+) False LOC110504274
TU2267650 other upstream 290949 41448402 ~ 41449340 (+) False G1983499
TU2267651 other upstream 290949 41448402 ~ 41449340 (+) False G1983499
TU2267652 other upstream 290949 41448402 ~ 41449340 (+) True G1983499
TU2267527 other upstream 389574 41314147 ~ 41350715 (+) True LOC110504259
TU2267528 other upstream 429835 41297706 ~ 41310454 (+) False LOC110504259
TU2267940 other downstream 321426 42063025 ~ 42103896 (+) True G1983721
TU2268011 other downstream 490641 42232240 ~ 42232904 (+) True G1983777
TU2268082 other downstream 520628 42262227 ~ 42262714 (+) True G1983836
TU2268690 other downstream 677561 42419160 ~ 42453823 (+) True cn112
TU2268800 other downstream 981376 42722975 ~ 42727949 (+) False LOC110505989

Expression Profile

TU2267800 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.5.
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TU2267800 Expression in each Bioproject

Bar chart with 10 bars.
TU2267800 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4.
End of interactive chart.