RNA id: TU2244298


Basic Information

Item Value
RNA id TU2244298
length 978
RNA type TUCP
GC content 0.63
exon number 1
gene id G1962803
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 22095519 ~ 22096496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGTTCTTCTTGCTCTCTTCCTTGGActccccttctgtctgtctggttcctgTCCTGTCCCTTCCCCCGCTGGCCTGAGGCCTCCTCACTGTCCTCCACTGGTGGACACAGGGCTCTGGGGCTCCCCTTACTCCATTGGGGCTGCTGTCCTGGCCCAGGCCCTGCTGAGATCCCGGGGCCACCACCACCAGGCACTTGTCACAGCGCtggtccccttcctcctcccctggaGGAGGCTCTAAGGAGCAGCGGGAGGAGGGGGGTGTCAGCTGGGGGGGAGAGTCCCCCTTCCTATGTAAGTTGTGTCCTGAGGAGGCCAGGCGACAGGCAGAGGACTGGATGACAGAACTGTGTGGCGGATGGGGCTTGCAGTGTTTGTCCAACCCCAGGTCCATCCCCAGCCCTGTGTTGTCCATGGTGAGGGTGTCATCATGGCCGTCTTCACAGCTGCCGCAGCAGACACAGGAGTTGAGCAGGCAGTGGGTGGCCACCAGGGGGCCGCAGGGCTCTGTagctgaggaggggggggggcggggcaggAGCAGCTTGTCCACAGCCAGCTCAGTCAGGCTGGGGGAGCCGGGATTGAAGATGACCGTGGCCGAGAGCTTCATCCCTCCCATACGGTGTGCAATGACTTCAGCAGTCTCGCCCCCCTCCAGGCCCACCTCCCAGCCGTTAGTGTAGGGCAAGGGCTCCAGGCCGGGGGTGGGGCCTGGTCGCTTGGTGTTTGGGCACTGGGGGGGCATGTTTTGGGGCTGCTGGGATGGATCTGACTGAGCATCAGTGGACCAGCCATTCCTGGTTGAGTCTGTCAGGAGGCCAGGTCTGTGGGGCTGAGGCAAGGAGGGCTGAGGGGCTTTGGAAGGCGAGGTCAAACGGCTGCTGGTCACAATGTCCCCTCCTGCGTCCAGGTCCTCCATGAAGAagactctgtcctcctcctcatgGTAGAGACCTGTCCTTCCCCGGCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2244292 lncRNA downstream 4791 22090469 ~ 22090728 (-) True G1962798
TU2244002 lncRNA downstream 78391 22016146 ~ 22017128 (-) True G1962530
TU2244239 lncRNA downstream 96796 21998499 ~ 21998723 (-) True G1962748
TU2243995 lncRNA downstream 97949 21995912 ~ 21997570 (-) True G1962524
TU2244202 lncRNA downstream 187733 21907454 ~ 21907786 (-) True G1962711
TU2244302 lncRNA upstream 1224 22097720 ~ 22097956 (-) True G1962804
TU2244303 lncRNA upstream 16554 22113050 ~ 22113572 (-) True G1962805
TU2244304 lncRNA upstream 17264 22113760 ~ 22114171 (-) True G1962806
TU2244305 lncRNA upstream 18244 22114740 ~ 22117086 (-) True G1962807
TU2244554 lncRNA upstream 21435 22117931 ~ 22118251 (-) False G1963012
XM_021584935.2 mRNA downstream 42935 22042184 ~ 22052584 (-) True cfap99
XM_021584938.2 mRNA downstream 53518 22030722 ~ 22042001 (-) True LOC110505611
XM_021584936.2 mRNA downstream 65222 22021788 ~ 22030297 (-) True si:dkey-21a6.5
XM_021584937.2 mRNA downstream 67378 22021788 ~ 22028141 (-) False si:dkey-21a6.5
XM_021584929.2 mRNA downstream 105577 21978646 ~ 21989942 (-) False LOC110505605
XM_036962315.1 mRNA upstream 79666 22176162 ~ 22186112 (-) False LOC110505614
XM_036962316.1 mRNA upstream 79666 22176162 ~ 22186112 (-) True LOC110505614
XM_036962266.1 mRNA upstream 123112 22219608 ~ 22221225 (-) True LOC110504206
XM_021584950.2 mRNA upstream 154016 22250512 ~ 22260265 (-) False rtn1a
XM_036962271.1 mRNA upstream 154016 22250512 ~ 22269382 (-) False rtn1a
TU2243996 other downstream 97949 21990844 ~ 21997570 (-) False G1962524
TU2244181 other downstream 208584 21876057 ~ 21886935 (-) True G1962691
TU2243067 other downstream 925860 21164411 ~ 21169659 (-) True G1961670
TU2242941 other downstream 1126064 20964531 ~ 20969455 (-) False LOC110505583
TU2242566 other downstream 1441657 20652941 ~ 20653862 (-) True G1961225
TU2245462 other upstream 940395 23036891 ~ 23045704 (-) True G1963846
TU2246278 other upstream 1068536 23165032 ~ 23168113 (-) True G1964564
TU2246307 other upstream 1125477 23221973 ~ 23222503 (-) True G1964592
TU2246459 other upstream 1329067 23425563 ~ 23428644 (-) False G1964728
TU2249876 other upstream 4438868 26535364 ~ 26538708 (-) True G1967882

Expression Profile