RNA id: TU2244339


Basic Information

Item Value
RNA id TU2244339
length 1418
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id G1962840
representative False

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 22179396 ~ 22181425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGTGATGGTGCAGTTTCTTGCTGAACAGGCTCTGCCACGTTCTCAGGGTAGACAGCCACCCTGACTGAGGTTGGTGCCTTGGCATCTGGACTGGATTTCACCTTACAGACTGTAGATTCAGTCATTTTTACATTTGTACCAAATGGATTGACACTTGGGTCAAATTGATCAAAGTCAAAGTTGTACTTGCCCTCGGGAAGAGGAATTTCATAATCAGTATTGACCAATGGCGTCACTGGAGATTCCTTGGATTGAGCAGGTTCTTTTTTTTCTGTAGGTACAGCCTTTTTCCATGTCGGCTTCAAAACAGGCCTTTTGTCAAACTTTTTTGGGGGAGGGTTGACCTCGCCGTCATCATCAAAATTTAACTCAAGTTTCACTGCACCATCCTTGGAAGGGGCTGCACTGGGCTGAGGTATGGATTCTTCAGCTGGCTTGCTGGTCTCTTCGGGAGCAGTTGACAATGGTGCAATAGGGTTCATCTCTGGCTGGACAGGTGCCTCTAGGACAGGCTGAACCACCTCAAGCATGGCTGCAGGCTCTTCAACTTCCACCTTTTGAGGGTCATCGCATGGCCGCTTCCTTCCAAGCACAGGGGAATTCTGCAATTTGGAGCCTCCCGTTTGGAAAGGGTTGACTGAATCAAGGTTGTCAAAATCAAATTCATATGTACCTTTTGGCGGCAGAGCAGTCTCCTCAGCTGTAGAGGTGATGGCCACAGCATCTTCAGCTGGCTTGGTAGTCTCCTTCGGTGCAATAGGTTTAATTTCTGGCTGGACAGGTGCTTCTAGGACAGGCTGAACCACCTCAAGCATGGCTGCTGGTTCCATTTCCTTTACTGCAGGCTCTTCAACTTCCACCTTTTTAGAGTCATCGCATGGCCGCTTCCTTCCAAGCACAGGGGAATTCTGCAATTTGGAGCCTCCCGTTTGGAAAGGGTTGACTGAATCAAGGTTGTCAAAATCAAATTCGTATGTACCTTTTGGTGGAAGAGGAGTCTCCTCGGCTATAGAGATGATAGCCACAGCTTGATCTGGGTCGAGGTTAACTGATGGTACAGTTTCTTCCTCACCAGAGTTGGATAACTTGTCGGCTGGGTCCTCAATCATGGTAATCACTCTGCTATCTGTTGAGCACATATCGGCTGAGAAGTCAGCAAGAAAATTTTCCACTGATGGCATGAACGGGAGTGTATCATCCAGTGCCTTTTCATTCCTGTCAGAAACTGCTTCAATGACATTATGTTCTCGCTGTTCTTCAGCCTTGGGAGTTTCAACTAGCTCACTGGGCCTTGCTGGGGAGAGGACCATTTTAGTAGACCCTTGGAAGGGATTTATGGCATCAAGGTTGTCAAAATACAGCTGACAACCTCCTTTACTCTGCATATCATCATCAGGATAGGACGACACATTTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2244336 lncRNA upstream 659 22176207 ~ 22178737 (+) True G1962838
TU2244314 lncRNA upstream 51660 22127536 ~ 22127736 (+) True G1962816
TU2244313 lncRNA upstream 53308 22125720 ~ 22126088 (+) True G1962815
TU2243922 lncRNA upstream 62335 22115769 ~ 22117061 (+) True zfyve28
TU2243970 lncRNA upstream 65837 22113322 ~ 22113559 (+) True G1962513
TU2244370 lncRNA downstream 39511 22220936 ~ 22221471 (+) True G1962858
TU2244371 lncRNA downstream 40569 22221994 ~ 22222290 (+) True G1962859
TU2244377 lncRNA downstream 43895 22225320 ~ 22225835 (+) True LOC110504207
TU2244398 lncRNA downstream 68633 22250058 ~ 22254771 (+) False G1962880
TU2244449 lncRNA downstream 139016 22320441 ~ 22320899 (+) True G1962919
XM_021584943.2 mRNA upstream 7496 22117768 ~ 22171900 (+) True LOC110505613
XM_021584939.2 mRNA upstream 62266 22053375 ~ 22117130 (+) False zfyve28
XM_021584941.2 mRNA upstream 62266 22053375 ~ 22117130 (+) False zfyve28
XM_021584942.2 mRNA upstream 62266 22053376 ~ 22117130 (+) False zfyve28
XM_036962535.1 mRNA upstream 163386 22001467 ~ 22016010 (+) False LOC110505607
XM_021584947.2 mRNA downstream 4774 22186199 ~ 22206709 (+) True kif15
LOC110504207 mRNA downstream 41689 22223114 ~ 22249992 (+) False LOC110504207
XM_021584948.2 mRNA downstream 115587 22297012 ~ 22318009 (+) False lrrc9
LOC110504208 mRNA downstream 174549 22355974 ~ 22365214 (+) True LOC110504208
XM_021584952.2 mRNA downstream 191532 22372957 ~ 22386710 (+) False ppm1aa
TU2243778 other upstream 311363 21838506 ~ 21868033 (+) True LOC110505603
TU2243748 other upstream 335386 21792183 ~ 21844010 (+) True G1962316
TU2242869 other upstream 1110727 21067964 ~ 21068669 (+) True G1961492
TU2242844 other upstream 1139596 21039205 ~ 21039800 (+) True G1961468
TU2242226 other upstream 1356758 20822317 ~ 20822638 (+) True G1960977
TU2244399 other downstream 87530 22268955 ~ 22274663 (+) True G1962880
TU2244437 other downstream 128919 22310344 ~ 22310801 (+) True lrrc9
TU2244488 other downstream 211166 22392591 ~ 22392956 (+) True G1962949
TU2245342 other downstream 736521 22917946 ~ 22918686 (+) True G1963734
TU2245829 other downstream 1424509 23605934 ~ 23613765 (+) True G1964177

Expression Profile