RNA id: TU2244903


Basic Information

Item Value
RNA id TU2244903
length 1675
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1963317
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 22697689 ~ 22699363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagcaaaccttgccacagctcgcattgatgtcccatcctggatgagcttcACTacttgagccacttgtgtgggtttagactccatctcatgctaccactagtgtgaaagcaccgccagcattcaaaagtgaccaaaacatcagccaggaagcataggaactgagaagtggtctgtggttatcacctgctgaaccactcctttattgggggtgtcttgctaattgcctataatttccacctgttgtctattccatttgcacaacagcatgtgaaatttattgtcaatcagtgttgcttcctaagtggacagcttgatttcacagaagtgtgaatgacttggagttacattgtgttgtttacgtgttcccttttttttttttgagcagtgtatattctgtGTCATGTCATGGAATATTGTGGTATCAATATAAACATGAATTCTTCACTCCAACAGAAGAATCCTGCAGTCAAATTAAAATTAGATACACATTAGATAACAAGGACAAAACTCTATTTGATTGGTACATACACAAATGTTGacacgttttctgtaagtcttcacaaggttttcacacactgttgctggtattttggcccattcctccatgcagatctcctctagagcagtgatgtttttgggctgttgctgggcaacacggactttcaactccctccaaagattttctatggggttgagatctggagactggctaggccactccaggacctggaaatgattcttacgaagccactccttcgttgcccgggcggtgtgtttgggatcattgtcatgctgaaagacccagccacgtttcatcttcaatgcccttgctgatggaaggaggttttcactcaaaatctcacgatacgtggtcccattcattctttcctttacacggatcagtcttcctggtccctttgcagaaaaaccgccccaaagcatgatgtttccacccccatgcttcacagtaggtatggtgttctttggatgcaactcagcattctttgtcctccaaacacgacgagttgagtttttaccaaaacgttctattttggtttcttctgaccatatgacattctcccaatcttcttctgggatcatccaaatgctctctagcaatcttcagacgggcctggacatgttctGGCTTAAgcagtccctggcggcgtagtgtgttactgatggtaggctttgttactttggtcccagctctctgcaggtcattcactaggtccccccgtgtggttctgggatttttgctcaccgttcttgtgatcattttgaccccacggggtgagatcttgcgtggagccccagatcgagggagattatcagtggtcttgtatgtcttccatttcctaataattgctcccacagttgatttcttcaaaccaagctgcttacctattgcagattcagtcttcccaacctggtgcaggtctacaattttgtttctggtgtcctttgacagctctttggtcttggccaaagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacaggtgccattaatacaggtaacgagtggaggacagagtagcctcttaaaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttccaccataatttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2244914 lncRNA upstream 100698 22596553 ~ 22596991 (+) True G1963328
TU2244851 lncRNA upstream 190050 22506682 ~ 22507639 (+) True G1963272
TU2244828 lncRNA upstream 204199 22493280 ~ 22493490 (+) True G1963250
TU2244818 lncRNA upstream 209589 22487870 ~ 22488100 (+) True G1963240
TU2244805 lncRNA upstream 220142 22477301 ~ 22477547 (+) True G1963227
TU2244995 lncRNA downstream 65295 22764658 ~ 22767587 (+) False LOC110504329
TU2244996 lncRNA downstream 67738 22767101 ~ 22767587 (+) True LOC110504329
TU2245151 lncRNA downstream 74078 22773441 ~ 22773648 (+) True G1963551
TU2245152 lncRNA downstream 74313 22773676 ~ 22773930 (+) True G1963552
TU2245173 lncRNA downstream 86675 22786038 ~ 22786497 (+) True G1963573
XM_036962421.1 mRNA upstream 1131 22665920 ~ 22696558 (+) False LOC110505629
XM_036962422.1 mRNA upstream 1131 22665920 ~ 22696558 (+) False LOC110505629
XM_021584969.2 mRNA upstream 1131 22665921 ~ 22696558 (+) False LOC110505629
XM_036962419.1 mRNA upstream 1131 22665921 ~ 22696558 (+) False LOC110505629
XM_021584968.2 mRNA upstream 1131 22665922 ~ 22696558 (+) False LOC110505629
XM_021584974.2 mRNA downstream 28366 22727729 ~ 22731299 (+) False LOC110505633
XM_021584975.2 mRNA downstream 28366 22727729 ~ 22731299 (+) True LOC110505633
XR_002470588.2 mRNA downstream 65334 22764697 ~ 22768365 (+) False LOC110504329
LOC110504209 mRNA downstream 71199 22770562 ~ 22780040 (+) True LOC110504209
XM_036962238.1 mRNA downstream 93721 22793084 ~ 22865803 (+) False LOC110505634
TU2244488 other upstream 304733 22392591 ~ 22392956 (+) True G1962949
TU2244437 other upstream 386888 22310344 ~ 22310801 (+) True lrrc9
TU2244399 other upstream 423026 22268955 ~ 22274663 (+) True G1962880
TU2243778 other upstream 829656 21838506 ~ 21868033 (+) True LOC110505603
TU2243748 other upstream 853679 21792183 ~ 21844010 (+) True G1962316
TU2245342 other downstream 218583 22917946 ~ 22918686 (+) True G1963734
TU2245829 other downstream 906571 23605934 ~ 23613765 (+) True G1964177
TU2246198 other downstream 1377158 24076521 ~ 24076721 (+) True G1964499
TU2247044 other downstream 1661074 24360437 ~ 24360985 (+) True G1965262
TU2247045 other downstream 1661725 24361088 ~ 24361482 (+) True G1965263

Expression Profile