RNA id: TU2247831


Basic Information

Item Value
RNA id TU2247831
length 280
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1965971
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 24888490 ~ 24888769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTCAAGGGGACGTGTTTGAAACACATGGCTTTTTATCTCCCACTCTGCCGTAATGAAATAAGCCGTTACAGTAAGGTATCTGTAGCTCTAGACATCCAACTGTCTGTTGTTAGAGCGACACACCGCATTTCTGACTACTCGCTCTCCAGTTGttcttttgtttttttgtatAAGCAGGTATTAATGTCTGGGCAAAATGTGTACAGGATGGAATAGTGAAGCGCGGCTCGACCACTTTAAACATGTTTCTGAACCCCGCATTCTCTACCACAGAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2247826 lncRNA upstream 3262 24885013 ~ 24885228 (+) True G1965966
TU2247641 lncRNA upstream 64346 24822213 ~ 24824144 (+) True G1965791
TU2247612 lncRNA upstream 116845 24771350 ~ 24771645 (+) True G1965763
TU2247594 lncRNA upstream 138953 24747717 ~ 24749537 (+) True G1965747
TU2247592 lncRNA upstream 169523 24714295 ~ 24718967 (+) True G1965746
TU2247858 lncRNA downstream 22539 24911308 ~ 24911640 (+) True G1965998
TU2247880 lncRNA downstream 39889 24928658 ~ 24928873 (+) True G1966020
TU2247884 lncRNA downstream 43359 24932128 ~ 24932374 (+) True G1966024
TU2247885 lncRNA downstream 43725 24932494 ~ 24932786 (+) True G1966025
TU2247928 lncRNA downstream 107227 24995996 ~ 24996265 (+) True G1966065
XM_021585088.2 mRNA upstream 96896 24788926 ~ 24791594 (+) False LOC110505697
XM_021585089.2 mRNA upstream 96896 24788934 ~ 24791594 (+) False LOC110505697
XM_021585087.2 mRNA upstream 113069 24771814 ~ 24775421 (+) True hs1bp3
XM_021585084.2 mRNA upstream 240063 24643048 ~ 24648427 (+) False LOC110505692
XM_021585082.2 mRNA upstream 257131 24626618 ~ 24631359 (+) True LOC110505690
XM_036962268.1 mRNA downstream 156093 25044862 ~ 25111937 (+) False LOC110504214
XM_036963023.1 mRNA downstream 229390 25118159 ~ 25185867 (+) False LOC110504215
XM_036963021.1 mRNA downstream 230580 25119349 ~ 25185867 (+) False LOC110504215
XM_036963019.1 mRNA downstream 230583 25119352 ~ 25185867 (+) False LOC110504215
XM_036963020.1 mRNA downstream 230583 25119352 ~ 25185867 (+) False LOC110504215
TU2247601 other upstream 96896 24789127 ~ 24791594 (+) True LOC110505697
TU2247195 other upstream 321343 24565731 ~ 24567147 (+) True G1965396
TU2247045 other upstream 527008 24361088 ~ 24361482 (+) True G1965263
TU2247044 other upstream 527505 24360437 ~ 24360985 (+) True G1965262
TU2246198 other upstream 811769 24076521 ~ 24076721 (+) True G1964499
TU2248937 other downstream 942807 25831576 ~ 25833321 (+) True G1967032
TU2249960 other downstream 1766136 26654905 ~ 26655336 (+) True G1967965
TU2250364 other downstream 2100070 26988839 ~ 27056667 (+) False LOC110505721
TU2250362 other downstream 2183646 27072415 ~ 27077140 (+) False LOC110505721
TU2250361 other downstream 2192493 27081262 ~ 27088316 (+) True LOC110505721

Expression Profile