RNA id: TU2248876


Basic Information

Item Value
RNA id TU2248876
length 323
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1966971
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 25771159 ~ 25771481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttctgacctagaatacgtggacaactacaaatacctagctgtctggctagactgtaaactctcattccagactcatatcaaacatcttcaatccaaaatcaaatctagaatcatctttctatttcgcaacaaagcctccttcactcatgccgccaaacttatcctagtaaaactgactatcctaccgatcctcaacttcggcgatgtcatctacaaaatagcttccaatactctactcagcaaattggatgtagtctatcacagtgccatccattttgttaccaaagcgccttataccacccacaaCTGAGACCTGTACGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2248870 lncRNA upstream 3903 25766859 ~ 25767256 (+) True G1966965
TU2248869 lncRNA upstream 4419 25766515 ~ 25766740 (+) True G1966964
TU2248800 lncRNA upstream 59811 25711144 ~ 25711348 (+) True G1966900
TU2248798 lncRNA upstream 62655 25708259 ~ 25708504 (+) True G1966898
TU2248788 lncRNA upstream 73243 25697702 ~ 25697916 (+) True G1966888
TU2248887 lncRNA downstream 13625 25785106 ~ 25785331 (+) True G1966982
TU2248923 lncRNA downstream 44649 25816130 ~ 25816335 (+) True G1967018
TU2249072 lncRNA downstream 141955 25913436 ~ 25913667 (+) True G1967163
TU2249080 lncRNA downstream 148058 25919539 ~ 25919880 (+) True G1967171
TU2249088 lncRNA downstream 155926 25927407 ~ 25927728 (+) True G1967179
LOC110505705 mRNA upstream 194188 25575962 ~ 25576971 (+) True LOC110505705
XM_021585092.2 mRNA upstream 441375 25221998 ~ 25329784 (+) False LOC110505701
XM_021585093.2 mRNA upstream 441375 25221998 ~ 25329784 (+) True LOC110505701
XM_036963022.1 mRNA upstream 585292 25119354 ~ 25185867 (+) False LOC110504215
XM_036962269.1 mRNA downstream 228220 25999701 ~ 26089364 (+) True LOC110504216
XM_021585101.2 mRNA downstream 665634 26437115 ~ 26520383 (+) False LOC110505710
XM_021585100.2 mRNA downstream 665635 26437116 ~ 26520383 (+) True LOC110505710
XM_036962921.1 mRNA downstream 756169 26527650 ~ 26533748 (+) False LOC110505712
XM_021585103.2 mRNA downstream 756169 26527650 ~ 26534059 (+) False LOC110505712
TU2247601 other upstream 979565 24789127 ~ 24791594 (+) True LOC110505697
TU2247195 other upstream 1204012 24565731 ~ 24567147 (+) True G1965396
TU2247045 other upstream 1409677 24361088 ~ 24361482 (+) True G1965263
TU2247044 other upstream 1410174 24360437 ~ 24360985 (+) True G1965262
TU2246198 other upstream 1694438 24076521 ~ 24076721 (+) True G1964499
TU2248937 other downstream 60095 25831576 ~ 25833321 (+) True G1967032
TU2249960 other downstream 883424 26654905 ~ 26655336 (+) True G1967965
TU2250364 other downstream 1217358 26988839 ~ 27056667 (+) False LOC110505721
TU2250362 other downstream 1300934 27072415 ~ 27077140 (+) False LOC110505721
TU2250361 other downstream 1309781 27081262 ~ 27088316 (+) True LOC110505721

Expression Profile