RNA id: TU2249088


Basic Information

Item Value
RNA id TU2249088
length 322
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G1967179
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 25927407 ~ 25927728 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacataaactactgcagcataaatactgaaggctgagacaggaggggtcgggagacactgtggccccatccgacgattcccccggacagggccaaacaggaaggatataaccccacccactttgccaaagcacagcccccacaccactagagggatatctttaaccaccaacttaccatcctgagacaaggccgagtatagcccacaaagatctccgccacggcacaactcaaGGATGGCGCCAAAACAGAcaagaagatcacgtcagtgactcaaccaactgaagtgacgcacccctcctagggatggcatggaagagcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2249080 lncRNA upstream 7527 25919539 ~ 25919880 (+) True G1967171
TU2249072 lncRNA upstream 13740 25913436 ~ 25913667 (+) True G1967163
TU2248923 lncRNA upstream 111072 25816130 ~ 25816335 (+) True G1967018
TU2248887 lncRNA upstream 142076 25785106 ~ 25785331 (+) True G1966982
TU2248876 lncRNA upstream 155926 25771159 ~ 25771481 (+) True G1966971
TU2249094 lncRNA downstream 5226 25932954 ~ 25933153 (+) True G1967185
TU2249097 lncRNA downstream 7095 25934823 ~ 25935028 (+) True G1967188
TU2249154 lncRNA downstream 52194 25979922 ~ 25980135 (+) True G1967245
TU2249159 lncRNA downstream 57452 25985180 ~ 25985566 (+) True G1967250
TU2249180 lncRNA downstream 95119 26022847 ~ 26031727 (+) True G1967267
LOC110505705 mRNA upstream 350436 25575962 ~ 25576971 (+) True LOC110505705
XM_021585092.2 mRNA upstream 597623 25221998 ~ 25329784 (+) False LOC110505701
XM_021585093.2 mRNA upstream 597623 25221998 ~ 25329784 (+) True LOC110505701
XM_036963022.1 mRNA upstream 741540 25119354 ~ 25185867 (+) False LOC110504215
XM_036962269.1 mRNA downstream 71973 25999701 ~ 26089364 (+) True LOC110504216
XM_021585101.2 mRNA downstream 509387 26437115 ~ 26520383 (+) False LOC110505710
XM_021585100.2 mRNA downstream 509388 26437116 ~ 26520383 (+) True LOC110505710
XM_036962921.1 mRNA downstream 599922 26527650 ~ 26533748 (+) False LOC110505712
XM_021585103.2 mRNA downstream 599922 26527650 ~ 26534059 (+) False LOC110505712
TU2248937 other upstream 94086 25831576 ~ 25833321 (+) True G1967032
TU2247601 other upstream 1135813 24789127 ~ 24791594 (+) True LOC110505697
TU2247195 other upstream 1360260 24565731 ~ 24567147 (+) True G1965396
TU2247045 other upstream 1565925 24361088 ~ 24361482 (+) True G1965263
TU2247044 other upstream 1566422 24360437 ~ 24360985 (+) True G1965262
TU2249960 other downstream 727177 26654905 ~ 26655336 (+) True G1967965
TU2250364 other downstream 1061111 26988839 ~ 27056667 (+) False LOC110505721
TU2250362 other downstream 1144687 27072415 ~ 27077140 (+) False LOC110505721
TU2250361 other downstream 1153534 27081262 ~ 27088316 (+) True LOC110505721
TU2252207 other downstream 2485872 28413600 ~ 28413919 (+) True G1970001

Expression Profile