RNA id: TU2249328



Basic Information


Item Value
RNA id TU2249328
length 262
lncRNA type intronic
GC content 0.38
exon number 2
gene id G1967393
representative True

Chromosome Information


Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 26209558 ~ 26210003 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ttactatctctctctattagtccttctgtctctctctctctattactgtctctctctctctattactgtctctctctctctctattactgtatctctctctctattactgtctctctctattactgtatctctctctctattactatctctctcttttagtccttcggtatctctctctctattactgtctctctctctctattactgtctctctctctctctattactgtatctctctctctattactgtctctctctatt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2249270 lncRNA upstream 104847 26104503 ~ 26104711 (+) True G1967342
TU2249260 lncRNA upstream 112118 26097239 ~ 26097440 (+) True G1967332
TU2249233 lncRNA upstream 130766 26078455 ~ 26078792 (+) True G1967318
TU2249183 lncRNA upstream 162257 26046888 ~ 26047301 (+) True G1967270
TU2249180 lncRNA upstream 177831 26022847 ~ 26031727 (+) True G1967267
TU2249346 lncRNA downstream 25526 26235529 ~ 26235744 (+) True G1967411
TU2249347 lncRNA downstream 26293 26236296 ~ 26236525 (+) True G1967412
TU2249442 lncRNA downstream 44858 26254861 ~ 26255070 (+) True G1967489
TU2249445 lncRNA downstream 46507 26256510 ~ 26256719 (+) True G1967492
TU2249449 lncRNA downstream 48579 26258582 ~ 26258783 (+) True G1967496
XM_036962269.1 mRNA upstream 120194 25999701 ~ 26089364 (+) True LOC110504216
LOC110505705 mRNA upstream 632587 25575962 ~ 25576971 (+) True LOC110505705
XM_021585092.2 mRNA upstream 879774 25221998 ~ 25329784 (+) False LOC110505701
XM_021585093.2 mRNA upstream 879774 25221998 ~ 25329784 (+) True LOC110505701
XM_036963024.1 mRNA upstream 1023691 25119355 ~ 25185867 (+) True LOC110504215
XM_021585101.2 mRNA downstream 227112 26437115 ~ 26520383 (+) False LOC110505710
XM_021585100.2 mRNA downstream 227113 26437116 ~ 26520383 (+) True LOC110505710
XM_036962921.1 mRNA downstream 317647 26527650 ~ 26533748 (+) False LOC110505712
XM_021585103.2 mRNA downstream 317647 26527650 ~ 26534059 (+) False LOC110505712
XM_021585102.2 mRNA downstream 317648 26527651 ~ 26534059 (+) True LOC110505712
TU2248937 other upstream 376237 25831576 ~ 25833321 (+) True G1967032
TU2247601 other upstream 1417964 24789127 ~ 24791594 (+) True LOC110505697
TU2247195 other upstream 1642411 24565731 ~ 24567147 (+) True G1965396
TU2247045 other upstream 1848076 24361088 ~ 24361482 (+) True G1965263
TU2247044 other upstream 1848573 24360437 ~ 24360985 (+) True G1965262
TU2249960 other downstream 444902 26654905 ~ 26655336 (+) True G1967965
TU2250364 other downstream 778836 26988839 ~ 27056667 (+) False LOC110505721
TU2250362 other downstream 862412 27072415 ~ 27077140 (+) False LOC110505721
TU2250361 other downstream 871259 27081262 ~ 27088316 (+) True LOC110505721
TU2252207 other downstream 2203597 28413600 ~ 28413919 (+) True G1970001

Expression Profile