RNA id: TU2249910


Basic Information

Item Value
RNA id TU2249910
length 315
lncRNA type intronic
GC content 0.47
exon number 2
gene id G1967915
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 26605227 ~ 26610230 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accttttcttcctctctttcccccagctgttccttgtcttctctgactacctcgttcaccccttttcccacctgttccctttttccctctgattaggtctctatatctctctctgtttctgctcctgtctttgtcggattctcgtttgtgttactcatgcctgaaccagactatcgtcgtgtttgctgcaaccttgtcctgtcctgtcggaatctgcatgttcatctaaccttgtcctgtcctgtcggaatctgcctgtccatctgagcctacgtgtgtttcgtcattaaagaaactctgttttgttaattcgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2249897 lncRNA downstream 6693 26588827 ~ 26598534 (-) True G1967903
TU2249896 lncRNA downstream 18204 26586765 ~ 26587023 (-) True G1967902
TU2249894 lncRNA downstream 19973 26584944 ~ 26585254 (-) True G1967900
TU2249877 lncRNA downstream 64676 26539785 ~ 26540551 (-) True G1967883
TU2249798 lncRNA downstream 81804 26522952 ~ 26523423 (-) True G1967820
TU2249915 lncRNA upstream 7839 26618069 ~ 26618277 (-) True G1967920
TU2249917 lncRNA upstream 9345 26619575 ~ 26619780 (-) True G1967922
TU2249919 lncRNA upstream 10223 26620453 ~ 26623329 (-) True G1967924
TU2249921 lncRNA upstream 14328 26624558 ~ 26624879 (-) True G1967926
TU2249933 lncRNA upstream 20282 26630512 ~ 26630752 (-) True G1967938
XM_021585104.2 mRNA downstream 34777 26562132 ~ 26570450 (-) False spata7
XM_021585105.2 mRNA downstream 34777 26562132 ~ 26570450 (-) False spata7
XM_036962398.1 mRNA downstream 34777 26562132 ~ 26570450 (-) True spata7
LOC110505714 mRNA downstream 43294 26541975 ~ 26561933 (-) True LOC110505714
XM_036962752.1 mRNA downstream 370558 26106291 ~ 26234669 (-) True LOC110505709
XM_021583109.2 mRNA upstream 26175 26636405 ~ 26666349 (-) True LOC110504332
XM_021582978.2 mRNA upstream 62941 26673171 ~ 26675278 (-) False bdkrb1
NM_001124498.1 mRNA upstream 63217 26673447 ~ 26674541 (-) True bdkrb1
XM_021585106.2 mRNA upstream 76819 26687049 ~ 26689949 (-) True LOC110505715
XM_021585108.2 mRNA upstream 106312 26716542 ~ 26765410 (-) False LOC110505716
TU2249876 other downstream 66519 26535364 ~ 26538708 (-) True G1967882
TU2246459 other downstream 3176583 23425563 ~ 23428644 (-) False G1964728
TU2246307 other downstream 3382724 23221973 ~ 23222503 (-) True G1964592
TU2246278 other downstream 3437114 23165032 ~ 23168113 (-) True G1964564
TU2245462 other downstream 3559523 23036891 ~ 23045704 (-) True G1963846
TU2250152 other upstream 106454 26716684 ~ 26765371 (-) True LOC110505716
TU2251892 other upstream 1489691 28099921 ~ 28101436 (-) True G1969699
TU2251917 other upstream 1533208 28143438 ~ 28143762 (-) True G1969724
TU2252826 other upstream 2247710 28857940 ~ 28861987 (-) True G1970606
TU2253707 other upstream 2912530 29522760 ~ 29525046 (-) True G1971357

Expression Profile