RNA id: TU2249969


Basic Information

Item Value
RNA id TU2249969
length 251
lncRNA type intronic
GC content 0.34
exon number 1
gene id G1967974
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 26663542 ~ 26663792 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccttgtatatagcctctctgcggTTATTTTGCTGCTGCTCTTTAAATATTTGTTATTTAATAACCactttttacttaacacttatttttcttaactgaatggttggttaagggcttataagcatttcactgtacacctgctgtatttggcgcatgtgacaaataacatttgaatttcatttgtattaatttgtaaaaattccacgttgacattatagggcagggatcatcaactggATTCAGCTACTGgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2249967 lncRNA upstream 304 26663009 ~ 26663238 (+) True G1967972
TU2249963 lncRNA upstream 6083 26657148 ~ 26657459 (+) True G1967968
TU2249958 lncRNA upstream 10393 26652798 ~ 26653149 (+) True G1967963
TU2249863 lncRNA upstream 45356 26617985 ~ 26618186 (+) True G1967878
TU2249847 lncRNA upstream 49157 26596267 ~ 26614385 (+) True LOC110504217
TU2249972 lncRNA downstream 1382 26665174 ~ 26665388 (+) True G1967977
TU2250028 lncRNA downstream 42043 26705835 ~ 26706212 (+) True G1968028
TU2250043 lncRNA downstream 52080 26715872 ~ 26716085 (+) True G1968042
TU2250113 lncRNA downstream 153672 26817464 ~ 26817709 (+) True G1968101
TU2250269 lncRNA downstream 208372 26872164 ~ 26872489 (+) True G1968246
XM_021583031.2 mRNA upstream 40377 26582859 ~ 26623165 (+) False LOC110504217
XM_036962948.1 mRNA upstream 40377 26596244 ~ 26623165 (+) False LOC110504217
XM_021585103.2 mRNA upstream 129483 26527650 ~ 26534059 (+) False LOC110505712
XM_021585102.2 mRNA upstream 129483 26527651 ~ 26534059 (+) True LOC110505712
XM_036962921.1 mRNA upstream 129794 26527650 ~ 26533748 (+) False LOC110505712
XM_036962834.1 mRNA downstream 237985 26901777 ~ 26904037 (+) True LOC118944312
XM_036962792.1 mRNA downstream 288348 26952140 ~ 26953607 (+) True LOC110505720
XM_021585116.2 mRNA downstream 324598 26988390 ~ 27089348 (+) False LOC110505721
XM_036962394.1 mRNA downstream 324598 26988390 ~ 27089348 (+) False LOC110505721
XM_036962395.1 mRNA downstream 324598 26988390 ~ 27089348 (+) False LOC110505721
TU2249960 other upstream 8206 26654905 ~ 26655336 (+) True G1967965
TU2248937 other upstream 830221 25831576 ~ 25833321 (+) True G1967032
TU2247601 other upstream 1871948 24789127 ~ 24791594 (+) True LOC110505697
TU2247195 other upstream 2096395 24565731 ~ 24567147 (+) True G1965396
TU2247045 other upstream 2302060 24361088 ~ 24361482 (+) True G1965263
TU2250364 other downstream 325047 26988839 ~ 27056667 (+) False LOC110505721
TU2250362 other downstream 408623 27072415 ~ 27077140 (+) False LOC110505721
TU2250361 other downstream 417470 27081262 ~ 27088316 (+) True LOC110505721
TU2252207 other downstream 1749808 28413600 ~ 28413919 (+) True G1970001
TU2253384 other downstream 2810328 29474120 ~ 29478383 (+) True G1971104

Expression Profile