RNA id: TU2249972


Basic Information

Item Value
RNA id TU2249972
length 215
lncRNA type intronic
GC content 0.30
exon number 1
gene id G1967977
representative True

Chromosome Information

Item Value
chromosome id NC_048589.1
NCBI id CM023243.3
chromosome length 47542702
location 26665174 ~ 26665388 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACTAGCCTCACAAAGGCACCATTTGAATATATTGCAAATAAGGTTAGTTACAGTACTCTATAATGGAGCCTACTGTTACAGGTCCcaattcatatttttttcttctAACAAGCATTGTAGCATAAAGCAAGTTTGACATGACATTTTCACAGTAAAATACTTTTAATGGATTTATCATGAATAATTTCTTAGCTTATGTAATTGTGTAAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2249969 lncRNA upstream 1382 26663542 ~ 26663792 (+) True G1967974
TU2249967 lncRNA upstream 1936 26663009 ~ 26663238 (+) True G1967972
TU2249963 lncRNA upstream 7715 26657148 ~ 26657459 (+) True G1967968
TU2249958 lncRNA upstream 12025 26652798 ~ 26653149 (+) True G1967963
TU2249863 lncRNA upstream 46988 26617985 ~ 26618186 (+) True G1967878
TU2250028 lncRNA downstream 40447 26705835 ~ 26706212 (+) True G1968028
TU2250043 lncRNA downstream 50484 26715872 ~ 26716085 (+) True G1968042
TU2250113 lncRNA downstream 152076 26817464 ~ 26817709 (+) True G1968101
TU2250269 lncRNA downstream 206776 26872164 ~ 26872489 (+) True G1968246
TU2250329 lncRNA downstream 279332 26944720 ~ 26956196 (+) True G1968296
XM_021583031.2 mRNA upstream 42009 26582859 ~ 26623165 (+) False LOC110504217
XM_036962948.1 mRNA upstream 42009 26596244 ~ 26623165 (+) False LOC110504217
XM_021585103.2 mRNA upstream 131115 26527650 ~ 26534059 (+) False LOC110505712
XM_021585102.2 mRNA upstream 131115 26527651 ~ 26534059 (+) True LOC110505712
XM_036962921.1 mRNA upstream 131426 26527650 ~ 26533748 (+) False LOC110505712
XM_036962834.1 mRNA downstream 236389 26901777 ~ 26904037 (+) True LOC118944312
XM_036962792.1 mRNA downstream 286752 26952140 ~ 26953607 (+) True LOC110505720
XM_021585116.2 mRNA downstream 323002 26988390 ~ 27089348 (+) False LOC110505721
XM_036962394.1 mRNA downstream 323002 26988390 ~ 27089348 (+) False LOC110505721
XM_036962395.1 mRNA downstream 323002 26988390 ~ 27089348 (+) False LOC110505721
TU2249960 other upstream 9838 26654905 ~ 26655336 (+) True G1967965
TU2248937 other upstream 831853 25831576 ~ 25833321 (+) True G1967032
TU2247601 other upstream 1873580 24789127 ~ 24791594 (+) True LOC110505697
TU2247195 other upstream 2098027 24565731 ~ 24567147 (+) True G1965396
TU2247045 other upstream 2303692 24361088 ~ 24361482 (+) True G1965263
TU2250364 other downstream 323451 26988839 ~ 27056667 (+) False LOC110505721
TU2250362 other downstream 407027 27072415 ~ 27077140 (+) False LOC110505721
TU2250361 other downstream 415874 27081262 ~ 27088316 (+) True LOC110505721
TU2252207 other downstream 1748212 28413600 ~ 28413919 (+) True G1970001
TU2253384 other downstream 2808732 29474120 ~ 29478383 (+) True G1971104

Expression Profile